Gene annotation
Transcriptome id Sobic.007G039300.1
Synonym Sb07g003340, CRT1
Functional annotation ATP-binding region, ATPase-like domain containing protein, expressed
UniProt A0A1B6PFF1
Pfam PF13589
Panther DB PTHR23336 PTHR23336:SF18
NCBI CDD KOG1845; MORC family ATPases
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G36290 : compromised recognition of TCV 1
RAP-DB (Rice) LOC_Os10g10190.1 : ATP-binding region, ATPase-like domain containing protein, expressed
MaizeGDB (Corn) Zm00025a055219
Brachypodium KQJ96375 , KQJ96374 , PNT67216
Barley HORVU7Hr1G083280.2 , HORVU7Hr1G083280.3 , HORVU7Hr1G083280.1 , HORVU7Hr1G083280.6 , HORVU7Hr1G083280.7 , HORVU7Hr1G083280.4 , HORVU7Hr1G083280.5 , HORVU7Hr1G083280.8 , HORVU7Hr1G083280.9 , HORVU1Hr1G006770.9 , HORVU1Hr1G006770.8 , HORVU1Hr1G006770.7 , HORVU1Hr1G006770.6 , HORVU1Hr1G006770.5 , HORVU1Hr1G006770.4 , HORVU1Hr1G006770.3 , HORVU1Hr1G006770.2 , HORVU1Hr1G006770.1 , HORVU7Hr1G083280.10 , HORVU7Hr1G083280.11 , HORVU7Hr1G083280.12 , HORVU7Hr1G083280.14 , HORVU7Hr1G083280.15 , HORVU7Hr1G083280.16 , HORVU7Hr1G083280.17 , HORVU7Hr1G083280.18 , HORVU7Hr1G083280.19 , HORVU7Hr1G083280.25 , HORVU7Hr1G083280.24 , HORVU7Hr1G083280.26 , HORVU7Hr1G083280.21 , HORVU7Hr1G083280.20 , HORVU7Hr1G083280.23 , HORVU7Hr1G083280.22 , HORVU1Hr1G006770.14 , HORVU1Hr1G006770.12 , HORVU1Hr1G006770.11 , HORVU1Hr1G006770.10 , HORVU7Hr1G083280.13
Wheat TraesCS1B02G051700 , TraesCS1B02G051700 , TraesCS7D02G345800 , TraesCS7B02G249900 , TraesCS1D02G040800 , TraesCS1A02G039200 , TraesCS7A02G338600
Populus -


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cDNA sequences
Sobic.007G039300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G020900 ulp1 protease family protein, putative, expressed K16287: ubiquitin-like-specific protease 1C/D
2 Sobic.008G017900 expressed protein -
3 Sobic.002G154400 MIM, putative, expressed -
4 Sobic.002G263700 bromodomain protein 103, putative, expressed -
5 Sobic.004G350200 KH domain containing protein, putative, expressed K14944: RNA-binding protein Nova
6 Sobic.003G124600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
7 Sobic.010G269300 hydrolase, acting on carbon-nitrogen, putative, expressed -
8 Sobic.003G113300 expressed protein -
9 Sobic.003G130900 glucosidase II beta subunit-like domain containing protein, expressed K08288: protein kinase C substrate 80K-H
10 Sobic.001G030000 FG-GAP repeat-containing protein, putative, expressed -
11 Sobic.010G227000 pentatricopeptide, putative, expressed -
12 Sobic.006G191200 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
13 Sobic.002G182000 cwfJ-like family protein, putative, expressed -
14 Sobic.010G240800 REV1, putative, expressed K03515: DNA repair protein REV1
15 Sobic.010G130100 BAH domain containing protein, expressed -
16 Sobic.007G034200 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
17 Sobic.001G088900 serine/threonine-protein kinase TOUSLED, putative, expressed K08864: tousled-like kinase
18 Sobic.004G141800 expressed protein -
19 Sobic.003G010900 expressed protein -
20 Sobic.001G039300 GTPase of unknown function domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic007G039300 Sobic007G039300 Sobic004G020900 Sobic004G020900 Sobic007G039300--Sobic004G020900 Sobic008G017900 Sobic008G017900 Sobic007G039300--Sobic008G017900 Sobic002G154400 Sobic002G154400 Sobic007G039300--Sobic002G154400 Sobic002G263700 Sobic002G263700 Sobic007G039300--Sobic002G263700 Sobic004G350200 Sobic004G350200 Sobic007G039300--Sobic004G350200 Sobic003G124600 Sobic003G124600 Sobic007G039300--Sobic003G124600 Sobic010G269300 Sobic010G269300 Sobic007G039300--Sobic010G269300 Sobic003G113300 Sobic003G113300 Sobic007G039300--Sobic003G113300 Sobic003G130900 Sobic003G130900 Sobic007G039300--Sobic003G130900 Sobic004G020900--Sobic007G039300 Sobic004G043750 Sobic004G043750 Sobic004G020900--Sobic004G043750 Sobic004G020900--Sobic008G017900 Sobic009G032200 Sobic009G032200 Sobic004G020900--Sobic009G032200 Sobic004G020900--Sobic010G269300 Sobic009G122800 Sobic009G122800 Sobic004G020900--Sobic009G122800 Sobic004G020900--Sobic002G263700 Sobic010G233000 Sobic010G233000 Sobic004G020900--Sobic010G233000 Sobic004G020900--Sobic002G154400 Sobic008G017900--Sobic004G020900 Sobic002G180900 Sobic002G180900 Sobic008G017900--Sobic002G180900 Sobic008G017900--Sobic007G039300 Sobic009G190200 Sobic009G190200 Sobic008G017900--Sobic009G190200 Sobic008G017900--Sobic002G263700 Sobic009G069200 Sobic009G069200 Sobic008G017900--Sobic009G069200 Sobic008G017900--Sobic002G154400 Sobic006G191200 Sobic006G191200 Sobic008G017900--Sobic006G191200 Sobic008G017900--Sobic003G124600 Sobic009G042100 Sobic009G042100 Sobic002G154400--Sobic009G042100 Sobic002G154400--Sobic007G039300 Sobic007G053700 Sobic007G053700 Sobic002G154400--Sobic007G053700 Sobic003G349000 Sobic003G349000 Sobic002G154400--Sobic003G349000 Sobic010G240800 Sobic010G240800 Sobic002G154400--Sobic010G240800 Sobic002G154400--Sobic004G020900 Sobic002G154400--Sobic009G032200 Sobic002G154400--Sobic008G017900 Sobic002G154400--Sobic009G069200 Sobic002G263700--Sobic010G269300 Sobic004G141800 Sobic004G141800 Sobic002G263700--Sobic004G141800 Sobic004G285000 Sobic004G285000 Sobic002G263700--Sobic004G285000 Sobic004G111000 Sobic004G111000 Sobic002G263700--Sobic004G111000 Sobic002G063900 Sobic002G063900 Sobic002G263700--Sobic002G063900 Sobic006G280100 Sobic006G280100 Sobic002G263700--Sobic006G280100 Sobic006G245900 Sobic006G245900 Sobic002G263700--Sobic006G245900 Sobic003G016500 Sobic003G016500 Sobic002G263700--Sobic003G016500 Sobic004G309900 Sobic004G309900 Sobic002G263700--Sobic004G309900 Sobic010G038900 Sobic010G038900 Sobic004G350200--Sobic010G038900 Sobic004G000400 Sobic004G000400 Sobic004G350200--Sobic004G000400 Sobic005G160200 Sobic005G160200 Sobic004G350200--Sobic005G160200 Sobic007G036800 Sobic007G036800 Sobic004G350200--Sobic007G036800 Sobic004G063300 Sobic004G063300 Sobic004G350200--Sobic004G063300 Sobic001G123600 Sobic001G123600 Sobic004G350200--Sobic001G123600 Sobic009G063800 Sobic009G063800 Sobic004G350200--Sobic009G063800 Sobic006G106600 Sobic006G106600 Sobic004G350200--Sobic006G106600 Sobic001G229300 Sobic001G229300 Sobic004G350200--Sobic001G229300 Sobic002G079100 Sobic002G079100 Sobic003G124600--Sobic002G079100 Sobic006G170900 Sobic006G170900 Sobic003G124600--Sobic006G170900 Sobic002G292800 Sobic002G292800 Sobic003G124600--Sobic002G292800 Sobic003G124600--Sobic003G016500 Sobic003G299500 Sobic003G299500 Sobic003G124600--Sobic003G299500 Sobic007G034200 Sobic007G034200 Sobic003G124600--Sobic007G034200 Sobic009G102000 Sobic009G102000 Sobic003G124600--Sobic009G102000 Sobic003G124600--Sobic003G113300 Sobic001G424600 Sobic001G424600 Sobic003G124600--Sobic001G424600 Sobic007G125700 Sobic007G125700 Sobic010G269300--Sobic007G125700 Sobic002G430900 Sobic002G430900 Sobic010G269300--Sobic002G430900 Sobic010G269300--Sobic002G263700 Sobic010G269300--Sobic001G123600 Sobic003G360300 Sobic003G360300 Sobic010G269300--Sobic003G360300 Sobic008G080500 Sobic008G080500 Sobic010G269300--Sobic008G080500 Sobic010G236200 Sobic010G236200 Sobic010G269300--Sobic010G236200 Sobic010G279900 Sobic010G279900 Sobic010G269300--Sobic010G279900 Sobic010G269300--Sobic009G032200 Sobic009G122500 Sobic009G122500 Sobic003G113300--Sobic009G122500 Sobic002G296400 Sobic002G296400 Sobic003G113300--Sobic002G296400 Sobic002G014800 Sobic002G014800 Sobic003G113300--Sobic002G014800 Sobic001G474400 Sobic001G474400 Sobic003G113300--Sobic001G474400 Sobic001G030000 Sobic001G030000 Sobic003G113300--Sobic001G030000 Sobic005G114500 Sobic005G114500 Sobic003G113300--Sobic005G114500 Sobic007G030100 Sobic007G030100 Sobic003G113300--Sobic007G030100 Sobic003G393200 Sobic003G393200 Sobic003G113300--Sobic003G393200 Sobic001G051400 Sobic001G051400 Sobic003G113300--Sobic001G051400 Sobic003G130900--Sobic005G114500 Sobic001G455000 Sobic001G455000 Sobic003G130900--Sobic001G455000 Sobic003G005900 Sobic003G005900 Sobic003G130900--Sobic003G005900 Sobic001G445500 Sobic001G445500 Sobic003G130900--Sobic001G445500 Sobic004G151200 Sobic004G151200 Sobic003G130900--Sobic004G151200 Sobic006G265600 Sobic006G265600 Sobic003G130900--Sobic006G265600 Sobic001G012900 Sobic001G012900 Sobic003G130900--Sobic001G012900 Sobic002G182000 Sobic002G182000 Sobic003G130900--Sobic002G182000 Sobic005G059500 Sobic005G059500 Sobic003G130900--Sobic005G059500
Octagon: transcription factors


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