Gene annotation
Transcriptome id Sobic.008G017900.1
Synonym Sb08g001550
Functional annotation expressed protein
UniProt C5YQN0
Pfam PF10536
Panther DB PTHR16007 PTHR16007:SF18
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G50830 : Aminotransferase-like, plant mobile domain family protein
RAP-DB (Rice) LOC_Os03g60170.1 : expressed protein
MaizeGDB (Corn) Zm00025a028972
Brachypodium PNT77226 , PNT77227 , PNT77228
Barley -
Wheat TraesCS2D02G266000 , TraesCS2B02G285800 , TraesCS2A02G256800 , TraesCS2B02G285800
Populus -


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cDNA sequences
Sobic.008G017900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G020900 ulp1 protease family protein, putative, expressed K16287: ubiquitin-like-specific protease 1C/D
2 Sobic.002G180900 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
3 Sobic.007G039300 ATP-binding region, ATPase-like domain containing protein, expressed -
4 Sobic.009G190200 transcription elongation factor SPT5 homolog 1, putative, expressed -
5 Sobic.002G263700 bromodomain protein 103, putative, expressed -
6 Sobic.009G069200 glycine-rich protein, putative, expressed -
7 Sobic.002G154400 MIM, putative, expressed -
8 Sobic.006G191200 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
9 Sobic.003G124600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
10 Sobic.004G141800 expressed protein -
11 Sobic.003G393200 expressed protein -
12 Sobic.001G051400 aminoacyl-tRNA synthetase, putative, expressed -
13 Sobic.010G269300 hydrolase, acting on carbon-nitrogen, putative, expressed -
14 Sobic.003G206600 glycine-rich protein, putative, expressed -
15 Sobic.004G043750 - K16251: DNA-directed RNA polymerase V subunit 1
16 Sobic.009G042100 MA3 domain containing protein, expressed K17583: nucleolar MIF4G domain-containing protein 1
17 Sobic.003G113300 expressed protein -
18 Sobic.003G010900 expressed protein -
19 Sobic.010G038900 expressed protein -
20 Sobic.004G236800 MAG2, putative, expressed -


Gene co-expression network
sample Sobic008G017900 Sobic008G017900 Sobic004G020900 Sobic004G020900 Sobic008G017900--Sobic004G020900 Sobic002G180900 Sobic002G180900 Sobic008G017900--Sobic002G180900 Sobic007G039300 Sobic007G039300 Sobic008G017900--Sobic007G039300 Sobic009G190200 Sobic009G190200 Sobic008G017900--Sobic009G190200 Sobic002G263700 Sobic002G263700 Sobic008G017900--Sobic002G263700 Sobic009G069200 Sobic009G069200 Sobic008G017900--Sobic009G069200 Sobic002G154400 Sobic002G154400 Sobic008G017900--Sobic002G154400 Sobic006G191200 Sobic006G191200 Sobic008G017900--Sobic006G191200 Sobic003G124600 Sobic003G124600 Sobic008G017900--Sobic003G124600 Sobic004G020900--Sobic007G039300 Sobic004G043750 Sobic004G043750 Sobic004G020900--Sobic004G043750 Sobic004G020900--Sobic008G017900 Sobic009G032200 Sobic009G032200 Sobic004G020900--Sobic009G032200 Sobic010G269300 Sobic010G269300 Sobic004G020900--Sobic010G269300 Sobic009G122800 Sobic009G122800 Sobic004G020900--Sobic009G122800 Sobic004G020900--Sobic002G263700 Sobic010G233000 Sobic010G233000 Sobic004G020900--Sobic010G233000 Sobic004G020900--Sobic002G154400 Sobic002G180900--Sobic008G017900 Sobic005G123400 Sobic005G123400 Sobic002G180900--Sobic005G123400 Sobic003G113300 Sobic003G113300 Sobic002G180900--Sobic003G113300 Sobic002G180900--Sobic006G191200 Sobic006G170900 Sobic006G170900 Sobic002G180900--Sobic006G170900 Sobic010G112600 Sobic010G112600 Sobic002G180900--Sobic010G112600 Sobic001G051400 Sobic001G051400 Sobic002G180900--Sobic001G051400 Sobic001G306800 Sobic001G306800 Sobic002G180900--Sobic001G306800 Sobic010G091400 Sobic010G091400 Sobic002G180900--Sobic010G091400 Sobic007G039300--Sobic004G020900 Sobic007G039300--Sobic008G017900 Sobic007G039300--Sobic002G154400 Sobic007G039300--Sobic002G263700 Sobic004G350200 Sobic004G350200 Sobic007G039300--Sobic004G350200 Sobic007G039300--Sobic003G124600 Sobic007G039300--Sobic010G269300 Sobic007G039300--Sobic003G113300 Sobic003G130900 Sobic003G130900 Sobic007G039300--Sobic003G130900 Sobic009G190200--Sobic004G043750 Sobic006G280100 Sobic006G280100 Sobic009G190200--Sobic006G280100 Sobic009G190200--Sobic002G263700 Sobic007G034200 Sobic007G034200 Sobic009G190200--Sobic007G034200 Sobic009G190200--Sobic008G017900 Sobic007G125700 Sobic007G125700 Sobic009G190200--Sobic007G125700 Sobic009G031500 Sobic009G031500 Sobic009G190200--Sobic009G031500 Sobic004G038100 Sobic004G038100 Sobic009G190200--Sobic004G038100 Sobic003G298900 Sobic003G298900 Sobic009G190200--Sobic003G298900 Sobic002G263700--Sobic010G269300 Sobic004G141800 Sobic004G141800 Sobic002G263700--Sobic004G141800 Sobic004G285000 Sobic004G285000 Sobic002G263700--Sobic004G285000 Sobic004G111000 Sobic004G111000 Sobic002G263700--Sobic004G111000 Sobic002G063900 Sobic002G063900 Sobic002G263700--Sobic002G063900 Sobic002G263700--Sobic006G280100 Sobic006G245900 Sobic006G245900 Sobic002G263700--Sobic006G245900 Sobic003G016500 Sobic003G016500 Sobic002G263700--Sobic003G016500 Sobic004G309900 Sobic004G309900 Sobic002G263700--Sobic004G309900 Sobic009G113100 Sobic009G113100 Sobic009G069200--Sobic009G113100 Sobic003G415100 Sobic003G415100 Sobic009G069200--Sobic003G415100 Sobic010G038900 Sobic010G038900 Sobic009G069200--Sobic010G038900 Sobic002G390400 Sobic002G390400 Sobic009G069200--Sobic002G390400 Sobic005G198200 Sobic005G198200 Sobic009G069200--Sobic005G198200 Sobic002G315100 Sobic002G315100 Sobic009G069200--Sobic002G315100 Sobic001G090300 Sobic001G090300 Sobic009G069200--Sobic001G090300 Sobic005G160200 Sobic005G160200 Sobic009G069200--Sobic005G160200 Sobic008G045800 Sobic008G045800 Sobic009G069200--Sobic008G045800 Sobic009G042100 Sobic009G042100 Sobic002G154400--Sobic009G042100 Sobic002G154400--Sobic007G039300 Sobic007G053700 Sobic007G053700 Sobic002G154400--Sobic007G053700 Sobic003G349000 Sobic003G349000 Sobic002G154400--Sobic003G349000 Sobic010G240800 Sobic010G240800 Sobic002G154400--Sobic010G240800 Sobic002G154400--Sobic004G020900 Sobic002G154400--Sobic009G032200 Sobic002G154400--Sobic008G017900 Sobic002G154400--Sobic009G069200 Sobic001G123600 Sobic001G123600 Sobic006G191200--Sobic001G123600 Sobic002G296400 Sobic002G296400 Sobic006G191200--Sobic002G296400 Sobic006G191200--Sobic001G051400 Sobic002G078100 Sobic002G078100 Sobic006G191200--Sobic002G078100 Sobic002G066800 Sobic002G066800 Sobic006G191200--Sobic002G066800 Sobic003G299500 Sobic003G299500 Sobic006G191200--Sobic003G299500 Sobic002G386900 Sobic002G386900 Sobic006G191200--Sobic002G386900 Sobic009G120400 Sobic009G120400 Sobic006G191200--Sobic009G120400 Sobic004G097900 Sobic004G097900 Sobic006G191200--Sobic004G097900 Sobic002G079100 Sobic002G079100 Sobic003G124600--Sobic002G079100 Sobic003G124600--Sobic006G170900 Sobic002G292800 Sobic002G292800 Sobic003G124600--Sobic002G292800 Sobic003G124600--Sobic003G016500 Sobic003G124600--Sobic003G299500 Sobic003G124600--Sobic007G034200 Sobic009G102000 Sobic009G102000 Sobic003G124600--Sobic009G102000 Sobic003G124600--Sobic003G113300 Sobic001G424600 Sobic001G424600 Sobic003G124600--Sobic001G424600
Octagon: transcription factors


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