Gene annotation
Transcriptome id Sobic.009G042100.1
Synonym Sb09g003530
Functional annotation MA3 domain containing protein, expressed
UniProt C5Z011
Pfam PF02854 PF02847
Panther DB PTHR18034 PTHR18034:SF4
NCBI CDD KOG2141; Protein involved in high osmolarity signaling pathway
KEGG Orthology K17583; nucleolar MIF4G domain-containing protein 1
Gene Ontology GO:0005515; protein binding GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT5G17930 : MIF4G domain-containing protein / MA3 domain-containing protein
RAP-DB (Rice) LOC_Os05g05450.1 : MA3 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a055392
Brachypodium KQK00388 , PNT69089 , PNT69088 , KQK00386 , KQK00387 , KQK00385 , KQK07554
Barley HORVU1Hr1G019650.8 , HORVU1Hr1G019650.9 , HORVU1Hr1G019650.4 , HORVU1Hr1G019650.5 , HORVU1Hr1G019650.6 , HORVU1Hr1G019650.7 , HORVU1Hr1G019650.1 , HORVU1Hr1G019650.2 , HORVU1Hr1G019650.3 , HORVU1Hr1G019650.13 , HORVU1Hr1G019650.10 , HORVU1Hr1G019650.11
Wheat TraesCS1B02G109000 , TraesCS1D02G091200 , TraesCS1B02G109000 , TraesCS1A02G109500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G206500 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
2 Sobic.002G154400 MIM, putative, expressed -
3 Sobic.003G206600 glycine-rich protein, putative, expressed -
4 Sobic.009G069200 glycine-rich protein, putative, expressed -
5 Sobic.008G017900 expressed protein -
6 Sobic.009G043400 OsFBL60 - F-box domain and LRR containing protein, expressed K10268: F-box and leucine-rich repeat protein 2/20
7 Sobic.003G349000 ruvB-like, putative, expressed K04499: RUVBL1, RVB1, RuvB-like protein 1 (pontin 52)
8 Sobic.002G312800 WD domain, G-beta repeat domain containing protein, expressed K14841: NSA1, ribosome biogenesis protein NSA1
9 Sobic.010G240800 REV1, putative, expressed K03515: DNA repair protein REV1
10 Sobic.006G143200 - K14805: DDX24, ATP-dependent RNA helicase DDX24/MAK5
11 Sobic.009G113100 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
12 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -
13 Sobic.010G038900 expressed protein -
14 Sobic.004G350200 KH domain containing protein, putative, expressed K14944: RNA-binding protein Nova
15 Sobic.007G039300 ATP-binding region, ATPase-like domain containing protein, expressed -
16 Sobic.006G120200 Rf1, mitochondrial precursor, putative, expressed -
17 Sobic.006G191200 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
18 Sobic.001G382500 AARP2CN domain containing protein, expressed K14569: ribosome biogenesis protein BMS1
19 Sobic.007G053700 MYB family transcription factor, putative, expressed -
20 Sobic.001G423300 outer membrane protein, OMP85 family, putative, expressed -


Gene co-expression network
sample Sobic009G042100 Sobic009G042100 Sobic001G206500 Sobic001G206500 Sobic009G042100--Sobic001G206500 Sobic002G154400 Sobic002G154400 Sobic009G042100--Sobic002G154400 Sobic003G206600 Sobic003G206600 Sobic009G042100--Sobic003G206600 Sobic009G069200 Sobic009G069200 Sobic009G042100--Sobic009G069200 Sobic008G017900 Sobic008G017900 Sobic009G042100--Sobic008G017900 Sobic009G043400 Sobic009G043400 Sobic009G042100--Sobic009G043400 Sobic003G349000 Sobic003G349000 Sobic009G042100--Sobic003G349000 Sobic002G312800 Sobic002G312800 Sobic009G042100--Sobic002G312800 Sobic010G240800 Sobic010G240800 Sobic009G042100--Sobic010G240800 Sobic001G206500--Sobic009G042100 Sobic001G455800 Sobic001G455800 Sobic001G206500--Sobic001G455800 Sobic003G004300 Sobic003G004300 Sobic001G206500--Sobic003G004300 Sobic001G098400 Sobic001G098400 Sobic001G206500--Sobic001G098400 Sobic003G222000 Sobic003G222000 Sobic001G206500--Sobic003G222000 Sobic010G081700 Sobic010G081700 Sobic001G206500--Sobic010G081700 Sobic004G031300 Sobic004G031300 Sobic001G206500--Sobic004G031300 Sobic002G428100 Sobic002G428100 Sobic001G206500--Sobic002G428100 Sobic001G004100 Sobic001G004100 Sobic001G206500--Sobic001G004100 Sobic002G154400--Sobic009G042100 Sobic007G039300 Sobic007G039300 Sobic002G154400--Sobic007G039300 Sobic007G053700 Sobic007G053700 Sobic002G154400--Sobic007G053700 Sobic002G154400--Sobic003G349000 Sobic002G154400--Sobic010G240800 Sobic004G020900 Sobic004G020900 Sobic002G154400--Sobic004G020900 Sobic009G032200 Sobic009G032200 Sobic002G154400--Sobic009G032200 Sobic002G154400--Sobic008G017900 Sobic002G154400--Sobic009G069200 Sobic002G009800 Sobic002G009800 Sobic003G206600--Sobic002G009800 Sobic003G206600--Sobic009G069200 Sobic004G160700 Sobic004G160700 Sobic003G206600--Sobic004G160700 Sobic003G206600--Sobic009G042100 Sobic002G029100 Sobic002G029100 Sobic003G206600--Sobic002G029100 Sobic003G206600--Sobic008G017900 Sobic003G206600--Sobic002G154400 Sobic010G077500 Sobic010G077500 Sobic003G206600--Sobic010G077500 Sobic001G135500 Sobic001G135500 Sobic003G206600--Sobic001G135500 Sobic009G113100 Sobic009G113100 Sobic009G069200--Sobic009G113100 Sobic003G415100 Sobic003G415100 Sobic009G069200--Sobic003G415100 Sobic010G038900 Sobic010G038900 Sobic009G069200--Sobic010G038900 Sobic002G390400 Sobic002G390400 Sobic009G069200--Sobic002G390400 Sobic005G198200 Sobic005G198200 Sobic009G069200--Sobic005G198200 Sobic002G315100 Sobic002G315100 Sobic009G069200--Sobic002G315100 Sobic001G090300 Sobic001G090300 Sobic009G069200--Sobic001G090300 Sobic005G160200 Sobic005G160200 Sobic009G069200--Sobic005G160200 Sobic008G045800 Sobic008G045800 Sobic009G069200--Sobic008G045800 Sobic008G017900--Sobic004G020900 Sobic002G180900 Sobic002G180900 Sobic008G017900--Sobic002G180900 Sobic008G017900--Sobic007G039300 Sobic009G190200 Sobic009G190200 Sobic008G017900--Sobic009G190200 Sobic002G263700 Sobic002G263700 Sobic008G017900--Sobic002G263700 Sobic008G017900--Sobic009G069200 Sobic008G017900--Sobic002G154400 Sobic006G191200 Sobic006G191200 Sobic008G017900--Sobic006G191200 Sobic003G124600 Sobic003G124600 Sobic008G017900--Sobic003G124600 Sobic002G104300 Sobic002G104300 Sobic009G043400--Sobic002G104300 Sobic001G083900 Sobic001G083900 Sobic009G043400--Sobic001G083900 Sobic008G065932 Sobic008G065932 Sobic009G043400--Sobic008G065932 Sobic010G273800 Sobic010G273800 Sobic009G043400--Sobic010G273800 Sobic009G207500 Sobic009G207500 Sobic009G043400--Sobic009G207500 Sobic001G278700 Sobic001G278700 Sobic009G043400--Sobic001G278700 Sobic009G156200 Sobic009G156200 Sobic009G043400--Sobic009G156200 Sobic002G349000 Sobic002G349000 Sobic009G043400--Sobic002G349000 Sobic004G200400 Sobic004G200400 Sobic009G043400--Sobic004G200400 Sobic003G349000--Sobic002G154400 Sobic003G349000--Sobic002G312800 Sobic001G141700 Sobic001G141700 Sobic003G349000--Sobic001G141700 Sobic003G282700 Sobic003G282700 Sobic003G349000--Sobic003G282700 Sobic003G349000--Sobic007G053700 Sobic010G237800 Sobic010G237800 Sobic003G349000--Sobic010G237800 Sobic003G349000--Sobic009G042100 Sobic010G241600 Sobic010G241600 Sobic003G349000--Sobic010G241600 Sobic002G056000 Sobic002G056000 Sobic003G349000--Sobic002G056000 Sobic001G466600 Sobic001G466600 Sobic002G312800--Sobic001G466600 Sobic006G095400 Sobic006G095400 Sobic002G312800--Sobic006G095400 Sobic002G312800--Sobic003G349000 Sobic001G299800 Sobic001G299800 Sobic002G312800--Sobic001G299800 Sobic002G312800--Sobic002G154400 Sobic002G312800--Sobic010G241600 Sobic002G312800--Sobic009G042100 Sobic002G312800--Sobic003G282700 Sobic002G312800--Sobic007G053700 Sobic010G240800--Sobic002G154400 Sobic008G057000 Sobic008G057000 Sobic010G240800--Sobic008G057000 Sobic001G222000 Sobic001G222000 Sobic010G240800--Sobic001G222000 Sobic010G240800--Sobic009G032200 Sobic010G240800--Sobic007G039300 Sobic007G004000 Sobic007G004000 Sobic010G240800--Sobic007G004000 Sobic001G355200 Sobic001G355200 Sobic010G240800--Sobic001G355200 Sobic010G240800--Sobic002G263700 Sobic007G168300 Sobic007G168300 Sobic010G240800--Sobic007G168300
Octagon: transcription factors


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