Gene annotation
Transcriptome id Sobic.006G120200.2
Synonym Sb06g020090
Functional annotation Rf1, mitochondrial precursor, putative, expressed
UniProt A0A1Z5RDG1
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF902
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G15630 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os04g40130.1 : Rf1, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a010991
Brachypodium KQJ83159
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G432100 expressed protein -
2 Sobic.004G348600 tetratricopeptide repeat containing protein, putative, expressed -
3 Sobic.002G278600 peptidyl-prolyl cis-trans isomerase, putative, expressed -
4 Sobic.003G206600 glycine-rich protein, putative, expressed -
5 Sobic.003G396800 expressed protein K17413: small subunit ribosomal protein S35
6 Sobic.002G280900 la domain containing protein, putative, expressed K18757: la-related protein 1
7 Sobic.004G067400 expressed protein -
8 Sobic.005G132700 acetyltransferase, GNAT family, putative, expressed K00670: NAA30, N-alpha-acetyltransferase 30
9 Sobic.010G059700 galactosyltransferase family protein, putative, expressed -
10 Sobic.001G099800 nucleic acid binding protein, putative, expressed -
11 Sobic.008G050700 OsSigP5 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed K13280: SEC11, signal peptidase I
12 Sobic.009G063800 ATP10 protein, expressed K18192: mitochondrial ATPase complex subunit ATP10
13 Sobic.002G009800 VIP4, putative, expressed K15177: RNA polymerase-associated protein LEO1
14 Sobic.002G329700 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
15 Sobic.009G042100 MA3 domain containing protein, expressed K17583: nucleolar MIF4G domain-containing protein 1
16 Sobic.003G038200 PPR repeat containing protein, expressed -
17 Sobic.002G182000 cwfJ-like family protein, putative, expressed -
18 Sobic.007G031100 RNA polymerase II complex component SRB7, putative, expressed K15152: MED21, mediator of RNA polymerase II transcription subunit 21
19 Sobic.001G206500 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
20 Sobic.004G137500 expressed protein -


Gene co-expression network
sample Sobic006G120200 Sobic006G120200 Sobic001G432100 Sobic001G432100 Sobic006G120200--Sobic001G432100 Sobic004G348600 Sobic004G348600 Sobic006G120200--Sobic004G348600 Sobic002G278600 Sobic002G278600 Sobic006G120200--Sobic002G278600 Sobic003G206600 Sobic003G206600 Sobic006G120200--Sobic003G206600 Sobic003G396800 Sobic003G396800 Sobic006G120200--Sobic003G396800 Sobic002G280900 Sobic002G280900 Sobic006G120200--Sobic002G280900 Sobic004G067400 Sobic004G067400 Sobic006G120200--Sobic004G067400 Sobic005G132700 Sobic005G132700 Sobic006G120200--Sobic005G132700 Sobic010G059700 Sobic010G059700 Sobic006G120200--Sobic010G059700 Sobic009G218000 Sobic009G218000 Sobic001G432100--Sobic009G218000 Sobic007G010200 Sobic007G010200 Sobic001G432100--Sobic007G010200 Sobic007G031100 Sobic007G031100 Sobic001G432100--Sobic007G031100 Sobic007G036800 Sobic007G036800 Sobic001G432100--Sobic007G036800 Sobic004G145600 Sobic004G145600 Sobic001G432100--Sobic004G145600 Sobic001G432100--Sobic002G280900 Sobic010G018900 Sobic010G018900 Sobic001G432100--Sobic010G018900 Sobic004G229000 Sobic004G229000 Sobic001G432100--Sobic004G229000 Sobic004G354100 Sobic004G354100 Sobic001G432100--Sobic004G354100 Sobic004G137500 Sobic004G137500 Sobic004G348600--Sobic004G137500 Sobic010G081700 Sobic010G081700 Sobic004G348600--Sobic010G081700 Sobic002G071100 Sobic002G071100 Sobic004G348600--Sobic002G071100 Sobic004G174700 Sobic004G174700 Sobic004G348600--Sobic004G174700 Sobic006G265600 Sobic006G265600 Sobic004G348600--Sobic006G265600 Sobic002G367800 Sobic002G367800 Sobic004G348600--Sobic002G367800 Sobic001G004200 Sobic001G004200 Sobic004G348600--Sobic001G004200 Sobic003G130000 Sobic003G130000 Sobic004G348600--Sobic003G130000 Sobic009G041800 Sobic009G041800 Sobic004G348600--Sobic009G041800 Sobic004G350200 Sobic004G350200 Sobic002G278600--Sobic004G350200 Sobic002G278600--Sobic010G059700 Sobic002G329700 Sobic002G329700 Sobic002G278600--Sobic002G329700 Sobic002G306600 Sobic002G306600 Sobic002G278600--Sobic002G306600 Sobic002G278600--Sobic006G120200 Sobic002G278600--Sobic003G396800 Sobic008G050700 Sobic008G050700 Sobic002G278600--Sobic008G050700 Sobic010G038900 Sobic010G038900 Sobic002G278600--Sobic010G038900 Sobic009G063800 Sobic009G063800 Sobic002G278600--Sobic009G063800 Sobic002G009800 Sobic002G009800 Sobic003G206600--Sobic002G009800 Sobic009G069200 Sobic009G069200 Sobic003G206600--Sobic009G069200 Sobic004G160700 Sobic004G160700 Sobic003G206600--Sobic004G160700 Sobic009G042100 Sobic009G042100 Sobic003G206600--Sobic009G042100 Sobic002G029100 Sobic002G029100 Sobic003G206600--Sobic002G029100 Sobic008G017900 Sobic008G017900 Sobic003G206600--Sobic008G017900 Sobic002G154400 Sobic002G154400 Sobic003G206600--Sobic002G154400 Sobic010G077500 Sobic010G077500 Sobic003G206600--Sobic010G077500 Sobic001G135500 Sobic001G135500 Sobic003G206600--Sobic001G135500 Sobic001G143900 Sobic001G143900 Sobic003G396800--Sobic001G143900 Sobic009G228600 Sobic009G228600 Sobic003G396800--Sobic009G228600 Sobic003G396800--Sobic009G063800 Sobic002G182000 Sobic002G182000 Sobic003G396800--Sobic002G182000 Sobic003G120700 Sobic003G120700 Sobic003G396800--Sobic003G120700 Sobic001G203600 Sobic001G203600 Sobic003G396800--Sobic001G203600 Sobic001G033600 Sobic001G033600 Sobic003G396800--Sobic001G033600 Sobic002G193500 Sobic002G193500 Sobic003G396800--Sobic002G193500 Sobic003G004800 Sobic003G004800 Sobic003G396800--Sobic003G004800 Sobic002G280900--Sobic010G059700 Sobic001G506000 Sobic001G506000 Sobic002G280900--Sobic001G506000 Sobic002G280900--Sobic007G031100 Sobic002G280900--Sobic001G432100 Sobic004G151200 Sobic004G151200 Sobic002G280900--Sobic004G151200 Sobic005G084900 Sobic005G084900 Sobic002G280900--Sobic005G084900 Sobic009G002000 Sobic009G002000 Sobic002G280900--Sobic009G002000 Sobic001G302900 Sobic001G302900 Sobic002G280900--Sobic001G302900 Sobic007G140600 Sobic007G140600 Sobic002G280900--Sobic007G140600 Sobic001G335500 Sobic001G335500 Sobic004G067400--Sobic001G335500 Sobic001G334100 Sobic001G334100 Sobic004G067400--Sobic001G334100 Sobic006G120800 Sobic006G120800 Sobic004G067400--Sobic006G120800 Sobic002G142700 Sobic002G142700 Sobic004G067400--Sobic002G142700 Sobic003G253400 Sobic003G253400 Sobic004G067400--Sobic003G253400 Sobic002G408600 Sobic002G408600 Sobic004G067400--Sobic002G408600 Sobic009G258400 Sobic009G258400 Sobic004G067400--Sobic009G258400 Sobic009G036200 Sobic009G036200 Sobic004G067400--Sobic009G036200 Sobic010G215900 Sobic010G215900 Sobic004G067400--Sobic010G215900 Sobic002G402500 Sobic002G402500 Sobic005G132700--Sobic002G402500 Sobic002G253100 Sobic002G253100 Sobic005G132700--Sobic002G253100 Sobic010G194200 Sobic010G194200 Sobic005G132700--Sobic010G194200 Sobic001G060300 Sobic001G060300 Sobic005G132700--Sobic001G060300 Sobic001G451901 Sobic001G451901 Sobic005G132700--Sobic001G451901 Sobic001G214900 Sobic001G214900 Sobic005G132700--Sobic001G214900 Sobic001G473400 Sobic001G473400 Sobic005G132700--Sobic001G473400 Sobic010G258000 Sobic010G258000 Sobic005G132700--Sobic010G258000 Sobic003G326900 Sobic003G326900 Sobic005G132700--Sobic003G326900 Sobic010G059700--Sobic007G036800 Sobic010G059700--Sobic002G306600 Sobic010G059700--Sobic009G063800 Sobic003G224300 Sobic003G224300 Sobic010G059700--Sobic003G224300 Sobic007G146600 Sobic007G146600 Sobic010G059700--Sobic007G146600 Sobic003G222700 Sobic003G222700 Sobic010G059700--Sobic003G222700 Sobic003G148900 Sobic003G148900 Sobic010G059700--Sobic003G148900 Sobic010G059700--Sobic004G145600 Sobic007G022700 Sobic007G022700 Sobic010G059700--Sobic007G022700
Octagon: transcription factors


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