Gene annotation
Transcriptome id Sobic.002G009800.1
Synonym VIP4, Sb02g001060
Functional annotation VIP4, putative, expressed
UniProt C5X7A4
Pfam PF04004
Panther DB PTHR23146 PTHR23146:SF0
NCBI CDD KOG2428; Uncharacterized conserved protein
KEGG Orthology K15177; RNA polymerase-associated protein LEO1
Gene Ontology GO:0016593; Cdc73/Paf1 complex GO:0016570histone modification GO:0006368transcription elongation from RNA polymerase II promoter


Orthologs (automatic annotation)
TAIR AT5G61150 : leo1-like family protein
RAP-DB (Rice) LOC_Os07g01880.1 : VIP4, putative, expressed
MaizeGDB (Corn) Zm00025a016243 , Zm00025a044889
Brachypodium KQK21197
Barley -
Wheat TraesCS2B02G281500 , TraesCS2A02G260500 , TraesCS2D02G263200
Populus -


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cDNA sequences
Sobic.002G009800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G206600 glycine-rich protein, putative, expressed -
2 Sobic.003G138900 aminotransferase, putative, expressed -
3 Sobic.002G388500 SART-1 family protein, putative, expressed K11984: SART1, HAF, U4/U6.U5 tri-snRNP-associated protein 1
4 Sobic.009G182600 SH2 motif, putative, expressed K11292: SUPT6H, transcription elongation factor SPT6
5 Sobic.007G053700 MYB family transcription factor, putative, expressed -
6 Sobic.009G126300 RING E3 ligase protein, putative, expressed K16279: E3 ubiquitin-protein ligase KEG
7 Sobic.007G004000 YL1 nuclear protein C-terminal domain containing protein, expressed K11664: VPS72, TCFL1, vacuolar protein sorting-associated protein 72
8 Sobic.009G105800 FHA domain containing protein, putative, expressed K13108: smad nuclear-interacting protein 1
9 Sobic.008G017900 expressed protein -
10 Sobic.002G154400 MIM, putative, expressed -
11 Sobic.003G058900 TATA-binding protein-associated factor 2N, putative, expressed K13098: TLS, RNA-binding protein FUS
12 Sobic.006G120200 Rf1, mitochondrial precursor, putative, expressed -
13 Sobic.004G105500 expressed protein -
14 Sobic.010G078900 transcription elongation factor SPT5 homolog 1, putative, expressed K15172: SUPT5H, transcription elongation factor SPT5
15 Sobic.006G169500 L-asparaginase precursor protein, putative, expressed K01444: AGA, N4-(beta-N-acetylglucosaminyl)-L-asparaginase
16 Sobic.001G426100 enolase, putative, expressed K01689: ENO, enolase
17 Sobic.002G003000 expressed protein -
18 Sobic.009G083400 RNA recognition motif family protein, expressed -
19 Sobic.007G039300 ATP-binding region, ATPase-like domain containing protein, expressed -
20 Sobic.003G074200 actin, putative, expressed K11672: ACTR5, ARP5, actin-related protein 5


Gene co-expression network
sample Sobic002G009800 Sobic002G009800 Sobic003G206600 Sobic003G206600 Sobic002G009800--Sobic003G206600 Sobic003G138900 Sobic003G138900 Sobic002G009800--Sobic003G138900 Sobic002G388500 Sobic002G388500 Sobic002G009800--Sobic002G388500 Sobic009G182600 Sobic009G182600 Sobic002G009800--Sobic009G182600 Sobic007G053700 Sobic007G053700 Sobic002G009800--Sobic007G053700 Sobic009G126300 Sobic009G126300 Sobic002G009800--Sobic009G126300 Sobic007G004000 Sobic007G004000 Sobic002G009800--Sobic007G004000 Sobic009G105800 Sobic009G105800 Sobic002G009800--Sobic009G105800 Sobic008G017900 Sobic008G017900 Sobic002G009800--Sobic008G017900 Sobic003G206600--Sobic002G009800 Sobic009G069200 Sobic009G069200 Sobic003G206600--Sobic009G069200 Sobic004G160700 Sobic004G160700 Sobic003G206600--Sobic004G160700 Sobic009G042100 Sobic009G042100 Sobic003G206600--Sobic009G042100 Sobic002G029100 Sobic002G029100 Sobic003G206600--Sobic002G029100 Sobic003G206600--Sobic008G017900 Sobic002G154400 Sobic002G154400 Sobic003G206600--Sobic002G154400 Sobic010G077500 Sobic010G077500 Sobic003G206600--Sobic010G077500 Sobic001G135500 Sobic001G135500 Sobic003G206600--Sobic001G135500 Sobic001G537500 Sobic001G537500 Sobic003G138900--Sobic001G537500 Sobic006G073200 Sobic006G073200 Sobic003G138900--Sobic006G073200 Sobic003G138900--Sobic009G182600 Sobic003G167900 Sobic003G167900 Sobic003G138900--Sobic003G167900 Sobic003G138900--Sobic009G105800 Sobic003G138900--Sobic002G009800 Sobic003G138900--Sobic009G126300 Sobic001G090100 Sobic001G090100 Sobic003G138900--Sobic001G090100 Sobic010G230600 Sobic010G230600 Sobic003G138900--Sobic010G230600 Sobic002G388500--Sobic009G126300 Sobic002G388500--Sobic009G182600 Sobic010G078900 Sobic010G078900 Sobic002G388500--Sobic010G078900 Sobic003G252100 Sobic003G252100 Sobic002G388500--Sobic003G252100 Sobic008G011000 Sobic008G011000 Sobic002G388500--Sobic008G011000 Sobic001G493700 Sobic001G493700 Sobic002G388500--Sobic001G493700 Sobic004G223000 Sobic004G223000 Sobic002G388500--Sobic004G223000 Sobic004G088501 Sobic004G088501 Sobic002G388500--Sobic004G088501 Sobic001G230000 Sobic001G230000 Sobic002G388500--Sobic001G230000 Sobic009G182600--Sobic009G126300 Sobic002G179400 Sobic002G179400 Sobic009G182600--Sobic002G179400 Sobic009G182600--Sobic001G493700 Sobic004G040500 Sobic004G040500 Sobic009G182600--Sobic004G040500 Sobic004G204100 Sobic004G204100 Sobic009G182600--Sobic004G204100 Sobic002G164200 Sobic002G164200 Sobic009G182600--Sobic002G164200 Sobic009G255600 Sobic009G255600 Sobic009G182600--Sobic009G255600 Sobic001G137000 Sobic001G137000 Sobic009G182600--Sobic001G137000 Sobic008G033900 Sobic008G033900 Sobic009G182600--Sobic008G033900 Sobic007G053700--Sobic002G154400 Sobic003G349000 Sobic003G349000 Sobic007G053700--Sobic003G349000 Sobic009G190200 Sobic009G190200 Sobic007G053700--Sobic009G190200 Sobic003G282700 Sobic003G282700 Sobic007G053700--Sobic003G282700 Sobic009G235200 Sobic009G235200 Sobic007G053700--Sobic009G235200 Sobic005G114101 Sobic005G114101 Sobic007G053700--Sobic005G114101 Sobic007G053700--Sobic002G009800 Sobic002G312800 Sobic002G312800 Sobic007G053700--Sobic002G312800 Sobic002G053200 Sobic002G053200 Sobic007G053700--Sobic002G053200 Sobic009G126300--Sobic009G182600 Sobic009G126300--Sobic001G493700 Sobic007G168300 Sobic007G168300 Sobic009G126300--Sobic007G168300 Sobic009G126300--Sobic001G137000 Sobic009G126300--Sobic002G179400 Sobic009G126300--Sobic004G088501 Sobic009G126300--Sobic009G255600 Sobic001G117200 Sobic001G117200 Sobic009G126300--Sobic001G117200 Sobic009G126300--Sobic002G388500 Sobic004G049700 Sobic004G049700 Sobic007G004000--Sobic004G049700 Sobic002G127100 Sobic002G127100 Sobic007G004000--Sobic002G127100 Sobic006G161000 Sobic006G161000 Sobic007G004000--Sobic006G161000 Sobic007G004000--Sobic002G388500 Sobic007G009700 Sobic007G009700 Sobic007G004000--Sobic007G009700 Sobic007G004000--Sobic007G168300 Sobic006G251900 Sobic006G251900 Sobic007G004000--Sobic006G251900 Sobic010G130100 Sobic010G130100 Sobic007G004000--Sobic010G130100 Sobic003G114500 Sobic003G114500 Sobic007G004000--Sobic003G114500 Sobic007G000300 Sobic007G000300 Sobic009G105800--Sobic007G000300 Sobic010G228700 Sobic010G228700 Sobic009G105800--Sobic010G228700 Sobic009G105800--Sobic010G078900 Sobic009G105800--Sobic009G182600 Sobic001G261900 Sobic001G261900 Sobic009G105800--Sobic001G261900 Sobic009G105800--Sobic009G126300 Sobic005G220000 Sobic005G220000 Sobic009G105800--Sobic005G220000 Sobic004G237100 Sobic004G237100 Sobic009G105800--Sobic004G237100 Sobic003G379200 Sobic003G379200 Sobic009G105800--Sobic003G379200 Sobic004G020900 Sobic004G020900 Sobic008G017900--Sobic004G020900 Sobic002G180900 Sobic002G180900 Sobic008G017900--Sobic002G180900 Sobic007G039300 Sobic007G039300 Sobic008G017900--Sobic007G039300 Sobic008G017900--Sobic009G190200 Sobic002G263700 Sobic002G263700 Sobic008G017900--Sobic002G263700 Sobic008G017900--Sobic009G069200 Sobic008G017900--Sobic002G154400 Sobic006G191200 Sobic006G191200 Sobic008G017900--Sobic006G191200 Sobic003G124600 Sobic003G124600 Sobic008G017900--Sobic003G124600
Octagon: transcription factors


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