Gene annotation
Transcriptome id Sobic.004G105500.1
Synonym Sb04g008610
Functional annotation expressed protein
UniProt C5XYY7 , A0A125QUH6
Pfam -
Panther DB PTHR35120 PTHR35120:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G58110 : -
RAP-DB (Rice) LOC_Os06g34710.1 : expressed protein
MaizeGDB (Corn) Zm00025a034516 , Zm00025a020000
Brachypodium KQK18140
Barley -
Wheat TraesCS7D02G333000
Populus -


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cDNA sequences
Sobic.004G105500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G126300 RING E3 ligase protein, putative, expressed K16279: E3 ubiquitin-protein ligase KEG
2 Sobic.001G088100 transcriptional adaptor, putative, expressed K11314: TADA2A, transcriptional adapter 2-alpha
3 Sobic.009G182600 SH2 motif, putative, expressed K11292: SUPT6H, transcription elongation factor SPT6
4 Sobic.001G008200 expressed protein K13211: GC-rich sequence DNA-binding factor
5 Sobic.009G020500 expressed protein -
6 Sobic.003G074200 actin, putative, expressed K11672: ACTR5, ARP5, actin-related protein 5
7 Sobic.003G293200 plus-3 domain containing protein, expressed -
8 Sobic.002G286200 DUF630/DUF632 domains containing protein, putative, expressed -
9 Sobic.001G138400 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck
10 Sobic.009G166100 PWWP domain containing protein, expressed -
11 Sobic.001G509500 glutamyl-tRNA synthetase, cytoplasmic, putative, expressed K01885: EARS, glutamyl-tRNA synthetase
12 Sobic.007G168300 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed -
13 Sobic.001G107900 fip1 motif family protein, expressed -
14 Sobic.010G279900 PHD-finger domain containing protein, expressed -
15 Sobic.004G095300 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
16 Sobic.010G001100 chromo domain containing protein, expressed -
17 Sobic.001G542700 expressed protein -
18 Sobic.001G137000 aberrant pollen transmission 1, putative, expressed -
19 Sobic.003G062300 NF-X1-type zinc finger protein, putative, expressed K15683: NFXL1, NF-X1-type zinc finger protein NFXL1
20 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1


Gene co-expression network
sample Sobic004G105500 Sobic004G105500 Sobic009G126300 Sobic009G126300 Sobic004G105500--Sobic009G126300 Sobic001G088100 Sobic001G088100 Sobic004G105500--Sobic001G088100 Sobic009G182600 Sobic009G182600 Sobic004G105500--Sobic009G182600 Sobic001G008200 Sobic001G008200 Sobic004G105500--Sobic001G008200 Sobic009G020500 Sobic009G020500 Sobic004G105500--Sobic009G020500 Sobic003G074200 Sobic003G074200 Sobic004G105500--Sobic003G074200 Sobic003G293200 Sobic003G293200 Sobic004G105500--Sobic003G293200 Sobic002G286200 Sobic002G286200 Sobic004G105500--Sobic002G286200 Sobic001G138400 Sobic001G138400 Sobic004G105500--Sobic001G138400 Sobic009G126300--Sobic009G182600 Sobic001G493700 Sobic001G493700 Sobic009G126300--Sobic001G493700 Sobic007G168300 Sobic007G168300 Sobic009G126300--Sobic007G168300 Sobic001G137000 Sobic001G137000 Sobic009G126300--Sobic001G137000 Sobic002G179400 Sobic002G179400 Sobic009G126300--Sobic002G179400 Sobic004G088501 Sobic004G088501 Sobic009G126300--Sobic004G088501 Sobic009G255600 Sobic009G255600 Sobic009G126300--Sobic009G255600 Sobic001G117200 Sobic001G117200 Sobic009G126300--Sobic001G117200 Sobic002G388500 Sobic002G388500 Sobic009G126300--Sobic002G388500 Sobic009G005500 Sobic009G005500 Sobic001G088100--Sobic009G005500 Sobic007G119200 Sobic007G119200 Sobic001G088100--Sobic007G119200 Sobic010G069100 Sobic010G069100 Sobic001G088100--Sobic010G069100 Sobic010G236400 Sobic010G236400 Sobic001G088100--Sobic010G236400 Sobic003G394300 Sobic003G394300 Sobic001G088100--Sobic003G394300 Sobic007G105100 Sobic007G105100 Sobic001G088100--Sobic007G105100 Sobic001G241200 Sobic001G241200 Sobic001G088100--Sobic001G241200 Sobic004G274200 Sobic004G274200 Sobic001G088100--Sobic004G274200 Sobic003G408600 Sobic003G408600 Sobic001G088100--Sobic003G408600 Sobic009G182600--Sobic009G126300 Sobic009G182600--Sobic002G179400 Sobic009G182600--Sobic001G493700 Sobic004G040500 Sobic004G040500 Sobic009G182600--Sobic004G040500 Sobic004G204100 Sobic004G204100 Sobic009G182600--Sobic004G204100 Sobic002G164200 Sobic002G164200 Sobic009G182600--Sobic002G164200 Sobic009G182600--Sobic009G255600 Sobic009G182600--Sobic001G137000 Sobic008G033900 Sobic008G033900 Sobic009G182600--Sobic008G033900 Sobic004G309900 Sobic004G309900 Sobic001G008200--Sobic004G309900 Sobic005G172500 Sobic005G172500 Sobic001G008200--Sobic005G172500 Sobic001G227400 Sobic001G227400 Sobic001G008200--Sobic001G227400 Sobic001G493200 Sobic001G493200 Sobic001G008200--Sobic001G493200 Sobic003G133900 Sobic003G133900 Sobic001G008200--Sobic003G133900 Sobic006G240100 Sobic006G240100 Sobic001G008200--Sobic006G240100 Sobic004G155600 Sobic004G155600 Sobic001G008200--Sobic004G155600 Sobic001G473600 Sobic001G473600 Sobic001G008200--Sobic001G473600 Sobic001G145400 Sobic001G145400 Sobic001G008200--Sobic001G145400 Sobic006G224800 Sobic006G224800 Sobic009G020500--Sobic006G224800 Sobic009G119000 Sobic009G119000 Sobic009G020500--Sobic009G119000 Sobic002G245000 Sobic002G245000 Sobic009G020500--Sobic002G245000 Sobic009G020500--Sobic009G255600 Sobic003G062300 Sobic003G062300 Sobic009G020500--Sobic003G062300 Sobic009G020500--Sobic009G126300 Sobic002G422100 Sobic002G422100 Sobic009G020500--Sobic002G422100 Sobic003G212900 Sobic003G212900 Sobic009G020500--Sobic003G212900 Sobic002G344600 Sobic002G344600 Sobic009G020500--Sobic002G344600 Sobic003G074200--Sobic007G168300 Sobic003G074200--Sobic003G062300 Sobic003G074200--Sobic004G309900 Sobic003G194500 Sobic003G194500 Sobic003G074200--Sobic003G194500 Sobic004G236800 Sobic004G236800 Sobic003G074200--Sobic004G236800 Sobic003G074200--Sobic001G008200 Sobic003G405500 Sobic003G405500 Sobic003G074200--Sobic003G405500 Sobic006G210000 Sobic006G210000 Sobic003G074200--Sobic006G210000 Sobic003G042400 Sobic003G042400 Sobic003G074200--Sobic003G042400 Sobic010G001100 Sobic010G001100 Sobic003G293200--Sobic010G001100 Sobic009G166100 Sobic009G166100 Sobic003G293200--Sobic009G166100 Sobic005G128400 Sobic005G128400 Sobic003G293200--Sobic005G128400 Sobic004G009600 Sobic004G009600 Sobic003G293200--Sobic004G009600 Sobic010G065300 Sobic010G065300 Sobic003G293200--Sobic010G065300 Sobic004G264300 Sobic004G264300 Sobic003G293200--Sobic004G264300 Sobic007G031600 Sobic007G031600 Sobic003G293200--Sobic007G031600 Sobic007G117400 Sobic007G117400 Sobic003G293200--Sobic007G117400 Sobic001G111600 Sobic001G111600 Sobic003G293200--Sobic001G111600 Sobic002G286200--Sobic007G168300 Sobic002G362800 Sobic002G362800 Sobic002G286200--Sobic002G362800 Sobic001G384000 Sobic001G384000 Sobic002G286200--Sobic001G384000 Sobic007G077900 Sobic007G077900 Sobic002G286200--Sobic007G077900 Sobic005G200800 Sobic005G200800 Sobic002G286200--Sobic005G200800 Sobic002G286200--Sobic004G105500 Sobic001G196500 Sobic001G196500 Sobic002G286200--Sobic001G196500 Sobic002G286200--Sobic009G126300 Sobic002G286200--Sobic003G293200 Sobic001G542700 Sobic001G542700 Sobic001G138400--Sobic001G542700 Sobic003G353600 Sobic003G353600 Sobic001G138400--Sobic003G353600 Sobic002G423200 Sobic002G423200 Sobic001G138400--Sobic002G423200 Sobic008G100100 Sobic008G100100 Sobic001G138400--Sobic008G100100 Sobic001G138400--Sobic003G293200 Sobic001G138400--Sobic007G031600 Sobic005G216300 Sobic005G216300 Sobic001G138400--Sobic005G216300 Sobic009G151200 Sobic009G151200 Sobic001G138400--Sobic009G151200 Sobic007G061700 Sobic007G061700 Sobic001G138400--Sobic007G061700
Octagon: transcription factors


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