Gene annotation
Transcriptome id Sobic.003G138900.1,Sobic.003G138900.2,Sobic.003G138900.3
Synonym Sb03g011840
Functional annotation aminotransferase, putative, expressed
UniProt A0A1B6Q309 , A0A1B6Q323 , A0A1B6Q384
Pfam PF00266
Panther DB PTHR11601 PTHR11601:SF37
NCBI CDD KOG1549; Cysteine desulfurase NFS1
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G62130 : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
RAP-DB (Rice) LOC_Os01g18640.1 : aminotransferase, putative, expressed
MaizeGDB (Corn) Zm00025a035148 , Zm00025a024227
Brachypodium -
Barley -
Wheat TraesCS3B02G239000 , TraesCS3B02G239000 , TraesCS3A02G193100 , TraesCS3A02G193100 , TraesCS3A02G193100 , TraesCS3D02G201800 , TraesCS3D02G201800 , TraesCS3D02G201800
Populus -


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cDNA sequences
Sobic.003G138900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G537500 GTP-binding protein, putative, expressed K06944: uncharacterized protein
2 Sobic.006G073200 OTU-like cysteine protease family protein, putative, expressed K12655: OTUD5, OTU domain-containing protein 5
3 Sobic.009G182600 SH2 motif, putative, expressed K11292: SUPT6H, transcription elongation factor SPT6
4 Sobic.003G167900 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
5 Sobic.009G105800 FHA domain containing protein, putative, expressed K13108: smad nuclear-interacting protein 1
6 Sobic.002G009800 VIP4, putative, expressed K15177: RNA polymerase-associated protein LEO1
7 Sobic.009G126300 RING E3 ligase protein, putative, expressed K16279: E3 ubiquitin-protein ligase KEG
8 Sobic.001G090100 SRPK4, putative, expressed K08832: SRPK3, serine/threonine-protein kinase SRPK3
9 Sobic.010G230600 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
10 Sobic.010G078900 transcription elongation factor SPT5 homolog 1, putative, expressed K15172: SUPT5H, transcription elongation factor SPT5
11 Sobic.003G188300 expressed protein -
12 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase
13 Sobic.003G314700 expressed protein -
14 Sobic.002G058700 RNA recognition motif containing protein, expressed K12885: RBMX, heterogeneous nuclear ribonucleoprotein G
15 Sobic.008G157200 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
16 Sobic.003G074200 actin, putative, expressed K11672: ACTR5, ARP5, actin-related protein 5
17 Sobic.002G052700 cyclophilin, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
18 Sobic.010G000800 PHD-finger domain containing protein, expressed -
19 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
20 Sobic.003G379200 wound-responsive family protein, putative, expressed -


Gene co-expression network
sample Sobic003G138900 Sobic003G138900 Sobic001G537500 Sobic001G537500 Sobic003G138900--Sobic001G537500 Sobic006G073200 Sobic006G073200 Sobic003G138900--Sobic006G073200 Sobic009G182600 Sobic009G182600 Sobic003G138900--Sobic009G182600 Sobic003G167900 Sobic003G167900 Sobic003G138900--Sobic003G167900 Sobic009G105800 Sobic009G105800 Sobic003G138900--Sobic009G105800 Sobic002G009800 Sobic002G009800 Sobic003G138900--Sobic002G009800 Sobic009G126300 Sobic009G126300 Sobic003G138900--Sobic009G126300 Sobic001G090100 Sobic001G090100 Sobic003G138900--Sobic001G090100 Sobic010G230600 Sobic010G230600 Sobic003G138900--Sobic010G230600 Sobic001G537500--Sobic006G073200 Sobic004G167200 Sobic004G167200 Sobic001G537500--Sobic004G167200 Sobic006G002800 Sobic006G002800 Sobic001G537500--Sobic006G002800 Sobic004G275600 Sobic004G275600 Sobic001G537500--Sobic004G275600 Sobic004G257100 Sobic004G257100 Sobic001G537500--Sobic004G257100 Sobic007G145400 Sobic007G145400 Sobic001G537500--Sobic007G145400 Sobic005G115500 Sobic005G115500 Sobic001G537500--Sobic005G115500 Sobic001G178300 Sobic001G178300 Sobic001G537500--Sobic001G178300 Sobic002G246700 Sobic002G246700 Sobic001G537500--Sobic002G246700 Sobic008G157200 Sobic008G157200 Sobic006G073200--Sobic008G157200 Sobic006G073200--Sobic004G257100 Sobic001G431000 Sobic001G431000 Sobic006G073200--Sobic001G431000 Sobic006G073200--Sobic001G537500 Sobic001G493200 Sobic001G493200 Sobic006G073200--Sobic001G493200 Sobic008G135200 Sobic008G135200 Sobic006G073200--Sobic008G135200 Sobic006G036100 Sobic006G036100 Sobic006G073200--Sobic006G036100 Sobic004G131300 Sobic004G131300 Sobic006G073200--Sobic004G131300 Sobic001G251100 Sobic001G251100 Sobic006G073200--Sobic001G251100 Sobic009G182600--Sobic009G126300 Sobic002G179400 Sobic002G179400 Sobic009G182600--Sobic002G179400 Sobic001G493700 Sobic001G493700 Sobic009G182600--Sobic001G493700 Sobic004G040500 Sobic004G040500 Sobic009G182600--Sobic004G040500 Sobic004G204100 Sobic004G204100 Sobic009G182600--Sobic004G204100 Sobic002G164200 Sobic002G164200 Sobic009G182600--Sobic002G164200 Sobic009G255600 Sobic009G255600 Sobic009G182600--Sobic009G255600 Sobic001G137000 Sobic001G137000 Sobic009G182600--Sobic001G137000 Sobic008G033900 Sobic008G033900 Sobic009G182600--Sobic008G033900 Sobic003G167900--Sobic006G073200 Sobic002G083900 Sobic002G083900 Sobic003G167900--Sobic002G083900 Sobic003G167900--Sobic008G157200 Sobic002G412700 Sobic002G412700 Sobic003G167900--Sobic002G412700 Sobic001G250700 Sobic001G250700 Sobic003G167900--Sobic001G250700 Sobic001G248100 Sobic001G248100 Sobic003G167900--Sobic001G248100 Sobic008G000400 Sobic008G000400 Sobic003G167900--Sobic008G000400 Sobic006G035500 Sobic006G035500 Sobic003G167900--Sobic006G035500 Sobic010G206300 Sobic010G206300 Sobic003G167900--Sobic010G206300 Sobic007G000300 Sobic007G000300 Sobic009G105800--Sobic007G000300 Sobic010G228700 Sobic010G228700 Sobic009G105800--Sobic010G228700 Sobic010G078900 Sobic010G078900 Sobic009G105800--Sobic010G078900 Sobic009G105800--Sobic009G182600 Sobic001G261900 Sobic001G261900 Sobic009G105800--Sobic001G261900 Sobic009G105800--Sobic009G126300 Sobic005G220000 Sobic005G220000 Sobic009G105800--Sobic005G220000 Sobic004G237100 Sobic004G237100 Sobic009G105800--Sobic004G237100 Sobic003G379200 Sobic003G379200 Sobic009G105800--Sobic003G379200 Sobic003G206600 Sobic003G206600 Sobic002G009800--Sobic003G206600 Sobic002G009800--Sobic003G138900 Sobic002G388500 Sobic002G388500 Sobic002G009800--Sobic002G388500 Sobic002G009800--Sobic009G182600 Sobic007G053700 Sobic007G053700 Sobic002G009800--Sobic007G053700 Sobic002G009800--Sobic009G126300 Sobic007G004000 Sobic007G004000 Sobic002G009800--Sobic007G004000 Sobic002G009800--Sobic009G105800 Sobic008G017900 Sobic008G017900 Sobic002G009800--Sobic008G017900 Sobic009G126300--Sobic009G182600 Sobic009G126300--Sobic001G493700 Sobic007G168300 Sobic007G168300 Sobic009G126300--Sobic007G168300 Sobic009G126300--Sobic001G137000 Sobic009G126300--Sobic002G179400 Sobic004G088501 Sobic004G088501 Sobic009G126300--Sobic004G088501 Sobic009G126300--Sobic009G255600 Sobic001G117200 Sobic001G117200 Sobic009G126300--Sobic001G117200 Sobic009G126300--Sobic002G388500 Sobic010G000800 Sobic010G000800 Sobic001G090100--Sobic010G000800 Sobic006G077200 Sobic006G077200 Sobic001G090100--Sobic006G077200 Sobic003G314700 Sobic003G314700 Sobic001G090100--Sobic003G314700 Sobic001G090100--Sobic005G115500 Sobic003G405500 Sobic003G405500 Sobic001G090100--Sobic003G405500 Sobic001G090100--Sobic001G248100 Sobic001G090100--Sobic003G379200 Sobic003G189600 Sobic003G189600 Sobic001G090100--Sobic003G189600 Sobic001G090100--Sobic009G182600 Sobic001G428800 Sobic001G428800 Sobic010G230600--Sobic001G428800 Sobic001G449900 Sobic001G449900 Sobic010G230600--Sobic001G449900 Sobic007G162100 Sobic007G162100 Sobic010G230600--Sobic007G162100 Sobic010G020400 Sobic010G020400 Sobic010G230600--Sobic010G020400 Sobic006G039400 Sobic006G039400 Sobic010G230600--Sobic006G039400 Sobic004G092500 Sobic004G092500 Sobic010G230600--Sobic004G092500 Sobic001G156900 Sobic001G156900 Sobic010G230600--Sobic001G156900 Sobic007G125000 Sobic007G125000 Sobic010G230600--Sobic007G125000 Sobic008G085700 Sobic008G085700 Sobic010G230600--Sobic008G085700
Octagon: transcription factors


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