Gene annotation
Transcriptome id Sobic.001G537500.1
Synonym Sb01g050020
Functional annotation GTP-binding protein, putative, expressed
UniProt C5WMP9
Pfam PF01926 PF02824 PF16897
Panther DB PTHR11702 PTHR11702:SF26
NCBI CDD -
KEGG Orthology K06944; uncharacterized protein
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G72660 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os05g28940.1 : GTP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a053559
Brachypodium KQK08381
Barley HORVU3Hr1G049820.12 , HORVU3Hr1G049820.10 , HORVU3Hr1G049820.11 , HORVU3Hr1G049820.5 , HORVU3Hr1G049820.8 , HORVU3Hr1G049820.9 , HORVU3Hr1G049820.1 , HORVU3Hr1G049820.2 , HORVU3Hr1G049820.3 , HORVU3Hr1G049820.4 , HORVU3Hr1G049820.6
Wheat TraesCS3A02G205600 , TraesCS3D02G210000 , TraesCS3D02G210000 , TraesCS3B02G237500
Populus PNT55039 , PNT55038 , PNT43968 , PNT43969 , PNT43964 , PNT43965 , PNT43966 , PNT43967 , PNT55040 , PNT55041 , PNT55042


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cDNA sequences
Sobic.001G537500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G073200 OTU-like cysteine protease family protein, putative, expressed K12655: OTUD5, OTU domain-containing protein 5
2 Sobic.004G167200 nucleoside-diphosphate-sugar epimerase, putative, expressed -
3 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
4 Sobic.004G275600 hydrolase, putative, expressed K01438: acetylornithine deacetylase
5 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
6 Sobic.007G145400 expressed protein -
7 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase
8 Sobic.001G178300 DNA-binding protein, putative, expressed -
9 Sobic.002G246700 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
10 Sobic.006G010400 tRNA-dihydrouridine synthase 3-like, putative, expressed K05544: tRNA-dihydrouridine synthase 3
11 Sobic.001G090100 SRPK4, putative, expressed K08832: SRPK3, serine/threonine-protein kinase SRPK3
12 Sobic.009G234700 protein of unknown function DUF1296 domain containing protein, expressed -
13 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
14 Sobic.009G045900 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
15 Sobic.001G455800 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
16 Sobic.007G071900 GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
17 Sobic.005G106200 expressed protein K10290: F-box protein 3
18 Sobic.004G356200 expressed protein -
19 Sobic.002G150700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
20 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase


Gene co-expression network
sample Sobic001G537500 Sobic001G537500 Sobic006G073200 Sobic006G073200 Sobic001G537500--Sobic006G073200 Sobic004G167200 Sobic004G167200 Sobic001G537500--Sobic004G167200 Sobic006G002800 Sobic006G002800 Sobic001G537500--Sobic006G002800 Sobic004G275600 Sobic004G275600 Sobic001G537500--Sobic004G275600 Sobic004G257100 Sobic004G257100 Sobic001G537500--Sobic004G257100 Sobic007G145400 Sobic007G145400 Sobic001G537500--Sobic007G145400 Sobic005G115500 Sobic005G115500 Sobic001G537500--Sobic005G115500 Sobic001G178300 Sobic001G178300 Sobic001G537500--Sobic001G178300 Sobic002G246700 Sobic002G246700 Sobic001G537500--Sobic002G246700 Sobic008G157200 Sobic008G157200 Sobic006G073200--Sobic008G157200 Sobic006G073200--Sobic004G257100 Sobic001G431000 Sobic001G431000 Sobic006G073200--Sobic001G431000 Sobic006G073200--Sobic001G537500 Sobic001G493200 Sobic001G493200 Sobic006G073200--Sobic001G493200 Sobic008G135200 Sobic008G135200 Sobic006G073200--Sobic008G135200 Sobic006G036100 Sobic006G036100 Sobic006G073200--Sobic006G036100 Sobic004G131300 Sobic004G131300 Sobic006G073200--Sobic004G131300 Sobic001G251100 Sobic001G251100 Sobic006G073200--Sobic001G251100 Sobic004G167200--Sobic001G537500 Sobic001G090100 Sobic001G090100 Sobic004G167200--Sobic001G090100 Sobic006G196300 Sobic006G196300 Sobic004G167200--Sobic006G196300 Sobic004G167200--Sobic006G073200 Sobic001G333100 Sobic001G333100 Sobic004G167200--Sobic001G333100 Sobic001G455800 Sobic001G455800 Sobic004G167200--Sobic001G455800 Sobic003G194100 Sobic003G194100 Sobic004G167200--Sobic003G194100 Sobic006G093300 Sobic006G093300 Sobic004G167200--Sobic006G093300 Sobic003G264100 Sobic003G264100 Sobic004G167200--Sobic003G264100 Sobic003G308500 Sobic003G308500 Sobic006G002800--Sobic003G308500 Sobic004G224600 Sobic004G224600 Sobic006G002800--Sobic004G224600 Sobic002G150700 Sobic002G150700 Sobic006G002800--Sobic002G150700 Sobic001G145400 Sobic001G145400 Sobic006G002800--Sobic001G145400 Sobic003G146600 Sobic003G146600 Sobic006G002800--Sobic003G146600 Sobic010G007100 Sobic010G007100 Sobic006G002800--Sobic010G007100 Sobic004G321700 Sobic004G321700 Sobic006G002800--Sobic004G321700 Sobic009G234700 Sobic009G234700 Sobic006G002800--Sobic009G234700 Sobic008G147200 Sobic008G147200 Sobic006G002800--Sobic008G147200 Sobic003G309300 Sobic003G309300 Sobic004G275600--Sobic003G309300 Sobic003G165101 Sobic003G165101 Sobic004G275600--Sobic003G165101 Sobic004G275600--Sobic001G537500 Sobic009G124000 Sobic009G124000 Sobic004G275600--Sobic009G124000 Sobic004G275600--Sobic006G073200 Sobic007G071900 Sobic007G071900 Sobic004G275600--Sobic007G071900 Sobic003G420900 Sobic003G420900 Sobic004G275600--Sobic003G420900 Sobic008G067100 Sobic008G067100 Sobic004G275600--Sobic008G067100 Sobic004G275600--Sobic004G257100 Sobic004G257100--Sobic004G131300 Sobic004G257100--Sobic001G251100 Sobic004G092500 Sobic004G092500 Sobic004G257100--Sobic004G092500 Sobic004G257100--Sobic006G073200 Sobic005G172500 Sobic005G172500 Sobic004G257100--Sobic005G172500 Sobic008G004600 Sobic008G004600 Sobic004G257100--Sobic008G004600 Sobic001G227400 Sobic001G227400 Sobic004G257100--Sobic001G227400 Sobic008G112800 Sobic008G112800 Sobic004G257100--Sobic008G112800 Sobic001G392300 Sobic001G392300 Sobic004G257100--Sobic001G392300 Sobic001G474400 Sobic001G474400 Sobic007G145400--Sobic001G474400 Sobic009G003700 Sobic009G003700 Sobic007G145400--Sobic009G003700 Sobic001G248100 Sobic001G248100 Sobic007G145400--Sobic001G248100 Sobic002G119600 Sobic002G119600 Sobic007G145400--Sobic002G119600 Sobic006G261400 Sobic006G261400 Sobic007G145400--Sobic006G261400 Sobic003G314700 Sobic003G314700 Sobic007G145400--Sobic003G314700 Sobic001G467100 Sobic001G467100 Sobic007G145400--Sobic001G467100 Sobic008G092800 Sobic008G092800 Sobic007G145400--Sobic008G092800 Sobic006G245900 Sobic006G245900 Sobic007G145400--Sobic006G245900 Sobic001G291800 Sobic001G291800 Sobic005G115500--Sobic001G291800 Sobic005G115500--Sobic001G145400 Sobic005G115500--Sobic001G248100 Sobic002G145800 Sobic002G145800 Sobic005G115500--Sobic002G145800 Sobic003G099300 Sobic003G099300 Sobic005G115500--Sobic003G099300 Sobic007G183300 Sobic007G183300 Sobic005G115500--Sobic007G183300 Sobic005G110499 Sobic005G110499 Sobic005G115500--Sobic005G110499 Sobic002G430300 Sobic002G430300 Sobic005G115500--Sobic002G430300 Sobic001G051700 Sobic001G051700 Sobic005G115500--Sobic001G051700 Sobic002G256700 Sobic002G256700 Sobic001G178300--Sobic002G256700 Sobic008G002300 Sobic008G002300 Sobic001G178300--Sobic008G002300 Sobic006G250300 Sobic006G250300 Sobic001G178300--Sobic006G250300 Sobic004G131800 Sobic004G131800 Sobic001G178300--Sobic004G131800 Sobic001G493700 Sobic001G493700 Sobic001G178300--Sobic001G493700 Sobic006G088200 Sobic006G088200 Sobic001G178300--Sobic006G088200 Sobic001G275300 Sobic001G275300 Sobic001G178300--Sobic001G275300 Sobic006G056700 Sobic006G056700 Sobic001G178300--Sobic006G056700 Sobic001G178300--Sobic001G537500 Sobic002G246700--Sobic001G455800 Sobic002G408900 Sobic002G408900 Sobic002G246700--Sobic002G408900 Sobic009G045900 Sobic009G045900 Sobic002G246700--Sobic009G045900 Sobic009G249800 Sobic009G249800 Sobic002G246700--Sobic009G249800 Sobic004G208500 Sobic004G208500 Sobic002G246700--Sobic004G208500 Sobic002G246700--Sobic001G537500 Sobic002G246700--Sobic007G071900 Sobic008G085700 Sobic008G085700 Sobic002G246700--Sobic008G085700 Sobic001G117800 Sobic001G117800 Sobic002G246700--Sobic001G117800
Octagon: transcription factors


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