Gene annotation
Transcriptome id Sobic.003G188300.1,Sobic.003G188300.2
Synonym Sb03g025310
Functional annotation expressed protein
UniProt A0A1B6Q494 , A0A1B6Q485
Pfam PF00628 PF02892 PF02892 PF00628
Panther DB PTHR10615 PTHR10615:SF104
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0003677DNA binding GO:0003677DNA binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G77250 : RING/FYVE/PHD-type zinc finger family protein
RAP-DB (Rice) LOC_Os01g36670.1 : expressed protein
MaizeGDB (Corn) Zm00025a038338
Brachypodium KQK08248 , PNT72176 , PNT72175
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155
2 Sobic.001G501800 ZOS1-20 - C2H2 zinc finger protein, expressed -
3 Sobic.007G000300 expressed protein -
4 Sobic.010G138900 cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed K11991: tRNA(adenine34) deaminase
5 Sobic.010G089800 expressed protein -
6 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
7 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
8 Sobic.003G052800 RST1, putative, expressed -
9 Sobic.010G262100 expressed protein -
10 Sobic.002G155000 EMB1381, putative, expressed -
11 Sobic.010G174700 expressed protein -
12 Sobic.001G151100 CCR4-NOT transcription factor, putative, expressed K12580: CNOT3, CCR4-NOT transcription complex subunit 3
13 Sobic.009G182600 SH2 motif, putative, expressed K11292: SUPT6H, transcription elongation factor SPT6
14 Sobic.002G374300 FAR1 family protein, expressed K17604: zinc finger SWIM domain-containing protein 3
15 Sobic.002G052700 cyclophilin, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
16 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase
17 Sobic.001G090100 SRPK4, putative, expressed K08832: SRPK3, serine/threonine-protein kinase SRPK3
18 Sobic.002G372500 exportin 1, putative, expressed K14288: exportin-T
19 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
20 Sobic.004G213800 expressed protein -


Gene co-expression network
sample Sobic003G188300 Sobic003G188300 Sobic001G451300 Sobic001G451300 Sobic003G188300--Sobic001G451300 Sobic001G501800 Sobic001G501800 Sobic003G188300--Sobic001G501800 Sobic007G000300 Sobic007G000300 Sobic003G188300--Sobic007G000300 Sobic010G138900 Sobic010G138900 Sobic003G188300--Sobic010G138900 Sobic010G089800 Sobic010G089800 Sobic003G188300--Sobic010G089800 Sobic006G269800 Sobic006G269800 Sobic003G188300--Sobic006G269800 Sobic002G145800 Sobic002G145800 Sobic003G188300--Sobic002G145800 Sobic003G052800 Sobic003G052800 Sobic003G188300--Sobic003G052800 Sobic010G262100 Sobic010G262100 Sobic003G188300--Sobic010G262100 Sobic001G451300--Sobic010G262100 Sobic004G034700 Sobic004G034700 Sobic001G451300--Sobic004G034700 Sobic001G451300--Sobic010G138900 Sobic002G043100 Sobic002G043100 Sobic001G451300--Sobic002G043100 Sobic003G309050 Sobic003G309050 Sobic001G451300--Sobic003G309050 Sobic010G174700 Sobic010G174700 Sobic001G451300--Sobic010G174700 Sobic002G371600 Sobic002G371600 Sobic001G451300--Sobic002G371600 Sobic009G142000 Sobic009G142000 Sobic001G451300--Sobic009G142000 Sobic002G399800 Sobic002G399800 Sobic001G451300--Sobic002G399800 Sobic001G501800--Sobic002G043100 Sobic004G107200 Sobic004G107200 Sobic001G501800--Sobic004G107200 Sobic005G200800 Sobic005G200800 Sobic001G501800--Sobic005G200800 Sobic002G425500 Sobic002G425500 Sobic001G501800--Sobic002G425500 Sobic003G409200 Sobic003G409200 Sobic001G501800--Sobic003G409200 Sobic001G063700 Sobic001G063700 Sobic001G501800--Sobic001G063700 Sobic003G101500 Sobic003G101500 Sobic001G501800--Sobic003G101500 Sobic003G360400 Sobic003G360400 Sobic001G501800--Sobic003G360400 Sobic001G346900 Sobic001G346900 Sobic001G501800--Sobic001G346900 Sobic001G275300 Sobic001G275300 Sobic007G000300--Sobic001G275300 Sobic003G241700 Sobic003G241700 Sobic007G000300--Sobic003G241700 Sobic001G393900 Sobic001G393900 Sobic007G000300--Sobic001G393900 Sobic006G088200 Sobic006G088200 Sobic007G000300--Sobic006G088200 Sobic003G062300 Sobic003G062300 Sobic007G000300--Sobic003G062300 Sobic003G016900 Sobic003G016900 Sobic007G000300--Sobic003G016900 Sobic001G261900 Sobic001G261900 Sobic007G000300--Sobic001G261900 Sobic007G212300 Sobic007G212300 Sobic007G000300--Sobic007G212300 Sobic007G173500 Sobic007G173500 Sobic007G000300--Sobic007G173500 Sobic008G088842 Sobic008G088842 Sobic010G138900--Sobic008G088842 Sobic010G138900--Sobic010G262100 Sobic010G138900--Sobic001G451300 Sobic010G138900--Sobic009G142000 Sobic001G453000 Sobic001G453000 Sobic010G138900--Sobic001G453000 Sobic003G435500 Sobic003G435500 Sobic010G138900--Sobic003G435500 Sobic003G250900 Sobic003G250900 Sobic010G138900--Sobic003G250900 Sobic010G138900--Sobic004G034700 Sobic010G138900--Sobic002G043100 Sobic006G080400 Sobic006G080400 Sobic010G089800--Sobic006G080400 Sobic010G205600 Sobic010G205600 Sobic010G089800--Sobic010G205600 Sobic006G036100 Sobic006G036100 Sobic010G089800--Sobic006G036100 Sobic010G089800--Sobic001G453000 Sobic010G089800--Sobic001G451300 Sobic001G004400 Sobic001G004400 Sobic010G089800--Sobic001G004400 Sobic010G188000 Sobic010G188000 Sobic010G089800--Sobic010G188000 Sobic001G248100 Sobic001G248100 Sobic010G089800--Sobic001G248100 Sobic006G169500 Sobic006G169500 Sobic010G089800--Sobic006G169500 Sobic006G269800--Sobic002G145800 Sobic006G269800--Sobic003G052800 Sobic008G147200 Sobic008G147200 Sobic006G269800--Sobic008G147200 Sobic008G017100 Sobic008G017100 Sobic006G269800--Sobic008G017100 Sobic006G269800--Sobic001G393900 Sobic006G269800--Sobic002G043100 Sobic001G417500 Sobic001G417500 Sobic006G269800--Sobic001G417500 Sobic006G269800--Sobic004G107200 Sobic006G269800--Sobic002G425500 Sobic002G145800--Sobic006G269800 Sobic003G416700 Sobic003G416700 Sobic002G145800--Sobic003G416700 Sobic007G183300 Sobic007G183300 Sobic002G145800--Sobic007G183300 Sobic001G087600 Sobic001G087600 Sobic002G145800--Sobic001G087600 Sobic001G051700 Sobic001G051700 Sobic002G145800--Sobic001G051700 Sobic002G145800--Sobic003G062300 Sobic002G145800--Sobic008G147200 Sobic001G023000 Sobic001G023000 Sobic002G145800--Sobic001G023000 Sobic010G186600 Sobic010G186600 Sobic002G145800--Sobic010G186600 Sobic003G052800--Sobic006G269800 Sobic003G052800--Sobic002G145800 Sobic002G430300 Sobic002G430300 Sobic003G052800--Sobic002G430300 Sobic003G052800--Sobic002G371600 Sobic002G372500 Sobic002G372500 Sobic003G052800--Sobic002G372500 Sobic003G052800--Sobic001G051700 Sobic003G052800--Sobic002G043100 Sobic003G052800--Sobic010G174700 Sobic003G217200 Sobic003G217200 Sobic003G052800--Sobic003G217200 Sobic010G262100--Sobic001G451300 Sobic010G262100--Sobic010G138900 Sobic010G262100--Sobic001G248100 Sobic008G080500 Sobic008G080500 Sobic010G262100--Sobic008G080500 Sobic010G262100--Sobic002G043100 Sobic010G262100--Sobic002G399800 Sobic010G262100--Sobic002G371600 Sobic003G314700 Sobic003G314700 Sobic010G262100--Sobic003G314700 Sobic008G092800 Sobic008G092800 Sobic010G262100--Sobic008G092800
Octagon: transcription factors


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