Gene annotation
Transcriptome id Sobic.007G053700.1
Synonym Sb07g004330
Functional annotation MYB family transcription factor, putative, expressed
UniProt A0A1Z5R897
Pfam PF13921
Panther DB PTHR10641 PTHR10641:SF517
NCBI CDD KOG0051; RNA polymerase I termination factor, Myb superfamily
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G41020 : myb family transcription factor
RAP-DB (Rice) LOC_Os06g19980.1 : MYB family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a030039
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G053700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G154400 MIM, putative, expressed -
2 Sobic.003G349000 ruvB-like, putative, expressed K04499: RUVBL1, RVB1, RuvB-like protein 1 (pontin 52)
3 Sobic.009G190200 transcription elongation factor SPT5 homolog 1, putative, expressed -
4 Sobic.003G282700 protein kri1, putative, expressed K14786: protein KRI1
5 Sobic.009G235200 ribosomal RNA large subunit methyltransferase J, putative, expressed K14857: SPB1, AdoMet-dependent rRNA methyltransferase SPB1
6 Sobic.005G114101 - -
7 Sobic.002G009800 VIP4, putative, expressed K15177: RNA polymerase-associated protein LEO1
8 Sobic.002G312800 WD domain, G-beta repeat domain containing protein, expressed K14841: NSA1, ribosome biogenesis protein NSA1
9 Sobic.002G053200 RNA recognition motif containing protein, expressed -
10 Sobic.010G042700 expressed protein -
11 Sobic.009G041600 CRS1/YhbY domain containing protein, putative, expressed -
12 Sobic.008G017900 expressed protein -
13 Sobic.009G042100 MA3 domain containing protein, expressed K17583: nucleolar MIF4G domain-containing protein 1
14 Sobic.004G020900 ulp1 protease family protein, putative, expressed K16287: ubiquitin-like-specific protease 1C/D
15 Sobic.009G083400 RNA recognition motif family protein, expressed -
16 Sobic.001G382500 AARP2CN domain containing protein, expressed K14569: ribosome biogenesis protein BMS1
17 Sobic.001G173800 nop14-like family protein, expressed K14766: NOP14, nucleolar protein 14
18 Sobic.001G261585 - -
19 Sobic.002G003000 expressed protein -
20 Sobic.004G043750 - K16251: DNA-directed RNA polymerase V subunit 1


Gene co-expression network
sample Sobic007G053700 Sobic007G053700 Sobic002G154400 Sobic002G154400 Sobic007G053700--Sobic002G154400 Sobic003G349000 Sobic003G349000 Sobic007G053700--Sobic003G349000 Sobic009G190200 Sobic009G190200 Sobic007G053700--Sobic009G190200 Sobic003G282700 Sobic003G282700 Sobic007G053700--Sobic003G282700 Sobic009G235200 Sobic009G235200 Sobic007G053700--Sobic009G235200 Sobic005G114101 Sobic005G114101 Sobic007G053700--Sobic005G114101 Sobic002G009800 Sobic002G009800 Sobic007G053700--Sobic002G009800 Sobic002G312800 Sobic002G312800 Sobic007G053700--Sobic002G312800 Sobic002G053200 Sobic002G053200 Sobic007G053700--Sobic002G053200 Sobic009G042100 Sobic009G042100 Sobic002G154400--Sobic009G042100 Sobic007G039300 Sobic007G039300 Sobic002G154400--Sobic007G039300 Sobic002G154400--Sobic007G053700 Sobic002G154400--Sobic003G349000 Sobic010G240800 Sobic010G240800 Sobic002G154400--Sobic010G240800 Sobic004G020900 Sobic004G020900 Sobic002G154400--Sobic004G020900 Sobic009G032200 Sobic009G032200 Sobic002G154400--Sobic009G032200 Sobic008G017900 Sobic008G017900 Sobic002G154400--Sobic008G017900 Sobic009G069200 Sobic009G069200 Sobic002G154400--Sobic009G069200 Sobic003G349000--Sobic002G154400 Sobic003G349000--Sobic002G312800 Sobic001G141700 Sobic001G141700 Sobic003G349000--Sobic001G141700 Sobic003G349000--Sobic003G282700 Sobic003G349000--Sobic007G053700 Sobic010G237800 Sobic010G237800 Sobic003G349000--Sobic010G237800 Sobic003G349000--Sobic009G042100 Sobic010G241600 Sobic010G241600 Sobic003G349000--Sobic010G241600 Sobic002G056000 Sobic002G056000 Sobic003G349000--Sobic002G056000 Sobic004G043750 Sobic004G043750 Sobic009G190200--Sobic004G043750 Sobic006G280100 Sobic006G280100 Sobic009G190200--Sobic006G280100 Sobic002G263700 Sobic002G263700 Sobic009G190200--Sobic002G263700 Sobic007G034200 Sobic007G034200 Sobic009G190200--Sobic007G034200 Sobic009G190200--Sobic008G017900 Sobic007G125700 Sobic007G125700 Sobic009G190200--Sobic007G125700 Sobic009G031500 Sobic009G031500 Sobic009G190200--Sobic009G031500 Sobic004G038100 Sobic004G038100 Sobic009G190200--Sobic004G038100 Sobic003G298900 Sobic003G298900 Sobic009G190200--Sobic003G298900 Sobic007G188200 Sobic007G188200 Sobic003G282700--Sobic007G188200 Sobic003G282700--Sobic003G349000 Sobic003G282700--Sobic010G241600 Sobic003G282700--Sobic007G053700 Sobic004G027700 Sobic004G027700 Sobic003G282700--Sobic004G027700 Sobic003G072500 Sobic003G072500 Sobic003G282700--Sobic003G072500 Sobic003G282700--Sobic002G154400 Sobic001G177400 Sobic001G177400 Sobic003G282700--Sobic001G177400 Sobic003G282700--Sobic010G237800 Sobic008G163500 Sobic008G163500 Sobic009G235200--Sobic008G163500 Sobic006G226300 Sobic006G226300 Sobic009G235200--Sobic006G226300 Sobic002G142600 Sobic002G142600 Sobic009G235200--Sobic002G142600 Sobic003G042400 Sobic003G042400 Sobic009G235200--Sobic003G042400 Sobic007G014800 Sobic007G014800 Sobic009G235200--Sobic007G014800 Sobic002G399200 Sobic002G399200 Sobic009G235200--Sobic002G399200 Sobic001G173800 Sobic001G173800 Sobic009G235200--Sobic001G173800 Sobic005G199200 Sobic005G199200 Sobic009G235200--Sobic005G199200 Sobic009G235200--Sobic002G263700 Sobic005G114101--Sobic002G053200 Sobic005G114101--Sobic002G154400 Sobic005G114101--Sobic007G053700 Sobic007G004000 Sobic007G004000 Sobic005G114101--Sobic007G004000 Sobic009G083400 Sobic009G083400 Sobic005G114101--Sobic009G083400 Sobic005G114101--Sobic007G039300 Sobic005G114101--Sobic003G349000 Sobic005G114101--Sobic003G282700 Sobic006G250100 Sobic006G250100 Sobic005G114101--Sobic006G250100 Sobic003G206600 Sobic003G206600 Sobic002G009800--Sobic003G206600 Sobic003G138900 Sobic003G138900 Sobic002G009800--Sobic003G138900 Sobic002G388500 Sobic002G388500 Sobic002G009800--Sobic002G388500 Sobic009G182600 Sobic009G182600 Sobic002G009800--Sobic009G182600 Sobic002G009800--Sobic007G053700 Sobic009G126300 Sobic009G126300 Sobic002G009800--Sobic009G126300 Sobic002G009800--Sobic007G004000 Sobic009G105800 Sobic009G105800 Sobic002G009800--Sobic009G105800 Sobic002G009800--Sobic008G017900 Sobic001G466600 Sobic001G466600 Sobic002G312800--Sobic001G466600 Sobic006G095400 Sobic006G095400 Sobic002G312800--Sobic006G095400 Sobic002G312800--Sobic003G349000 Sobic001G299800 Sobic001G299800 Sobic002G312800--Sobic001G299800 Sobic002G312800--Sobic002G154400 Sobic002G312800--Sobic010G241600 Sobic002G312800--Sobic009G042100 Sobic002G312800--Sobic003G282700 Sobic002G312800--Sobic007G053700 Sobic002G053200--Sobic005G114101 Sobic003G014900 Sobic003G014900 Sobic002G053200--Sobic003G014900 Sobic002G053200--Sobic007G053700 Sobic002G053200--Sobic003G282700 Sobic001G261585 Sobic001G261585 Sobic002G053200--Sobic001G261585 Sobic002G053200--Sobic009G083400 Sobic001G393401 Sobic001G393401 Sobic002G053200--Sobic001G393401 Sobic010G087000 Sobic010G087000 Sobic002G053200--Sobic010G087000 Sobic002G053200--Sobic002G154400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.