Gene annotation
Transcriptome id Sobic.002G053200.3,Sobic.002G053200.6,Sobic.002G053200.2,Sobic.002G053200.8,Sobic.002G053200.10,Sobic.002G053200.5,Sobic.002G053200.13,Sobic.002G053200.9,Sobic.002G053200.11,Sobic.002G053200.7,Sobic.002G053200.12,Sobic.002G053200.4
Synonym Sb02g004470
Functional annotation RNA recognition motif containing protein, expressed
UniProt Q9XEQ4 , A0A1W0W2F5 , B3VTC3 , A0A1W0W2D0 , A0A1W0W2G2 , A0A1W0W2E7 , A0A1W0W2E4 , A0A1W0W2G3 , A0A1W0W2E0 , A0A1W0W2C9
Pfam PF00385 PF14259 PF00076 PF14259 PF00076 PF00385 PF00076
Panther DB PTHR24012 PTHR24012:SF362
NCBI CDD KOG0131; Splicing factor 3b, subunit 4 KOG0123Polyadenylate-binding protein (RRM superfamily) KOG0123Polyadenylate-binding protein (RRM superfamily)
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G44710 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os07g08320.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G114101 - -
2 Sobic.003G014900 expressed protein -
3 Sobic.007G053700 MYB family transcription factor, putative, expressed -
4 Sobic.003G282700 protein kri1, putative, expressed K14786: protein KRI1
5 Sobic.001G261585 - -
6 Sobic.009G083400 RNA recognition motif family protein, expressed -
7 Sobic.001G393401 - -
8 Sobic.010G087000 - -
9 Sobic.002G154400 MIM, putative, expressed -
10 Sobic.003G067201 - -
11 Sobic.004G102000 expressed protein K13172: SRRM2, serine/arginine repetitive matrix protein 2
12 Sobic.005G143300 expressed protein -
13 Sobic.009G216500 expressed protein -
14 Sobic.004G020900 ulp1 protease family protein, putative, expressed K16287: ubiquitin-like-specific protease 1C/D
15 Sobic.004G313500 acetyltransferase, GNAT family, putative, expressed -
16 Sobic.009G066400 MAR-binding filament-like protein 1, putative, expressed -
17 Sobic.007G039300 ATP-binding region, ATPase-like domain containing protein, expressed -
18 Sobic.007G188200 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
19 Sobic.007G077700 expressed protein -
20 Sobic.002G060450 - -


Gene co-expression network
sample Sobic002G053200 Sobic002G053200 Sobic005G114101 Sobic005G114101 Sobic002G053200--Sobic005G114101 Sobic003G014900 Sobic003G014900 Sobic002G053200--Sobic003G014900 Sobic007G053700 Sobic007G053700 Sobic002G053200--Sobic007G053700 Sobic003G282700 Sobic003G282700 Sobic002G053200--Sobic003G282700 Sobic001G261585 Sobic001G261585 Sobic002G053200--Sobic001G261585 Sobic009G083400 Sobic009G083400 Sobic002G053200--Sobic009G083400 Sobic001G393401 Sobic001G393401 Sobic002G053200--Sobic001G393401 Sobic010G087000 Sobic010G087000 Sobic002G053200--Sobic010G087000 Sobic002G154400 Sobic002G154400 Sobic002G053200--Sobic002G154400 Sobic005G114101--Sobic002G053200 Sobic005G114101--Sobic002G154400 Sobic005G114101--Sobic007G053700 Sobic007G004000 Sobic007G004000 Sobic005G114101--Sobic007G004000 Sobic005G114101--Sobic009G083400 Sobic007G039300 Sobic007G039300 Sobic005G114101--Sobic007G039300 Sobic003G349000 Sobic003G349000 Sobic005G114101--Sobic003G349000 Sobic005G114101--Sobic003G282700 Sobic006G250100 Sobic006G250100 Sobic005G114101--Sobic006G250100 Sobic001G384600 Sobic001G384600 Sobic003G014900--Sobic001G384600 Sobic001G228400 Sobic001G228400 Sobic003G014900--Sobic001G228400 Sobic004G207000 Sobic004G207000 Sobic003G014900--Sobic004G207000 Sobic009G031500 Sobic009G031500 Sobic003G014900--Sobic009G031500 Sobic006G126600 Sobic006G126600 Sobic003G014900--Sobic006G126600 Sobic003G014900--Sobic002G053200 Sobic005G177900 Sobic005G177900 Sobic003G014900--Sobic005G177900 Sobic010G170900 Sobic010G170900 Sobic003G014900--Sobic010G170900 Sobic003G014900--Sobic001G393401 Sobic007G053700--Sobic002G154400 Sobic007G053700--Sobic003G349000 Sobic009G190200 Sobic009G190200 Sobic007G053700--Sobic009G190200 Sobic007G053700--Sobic003G282700 Sobic009G235200 Sobic009G235200 Sobic007G053700--Sobic009G235200 Sobic007G053700--Sobic005G114101 Sobic002G009800 Sobic002G009800 Sobic007G053700--Sobic002G009800 Sobic002G312800 Sobic002G312800 Sobic007G053700--Sobic002G312800 Sobic007G053700--Sobic002G053200 Sobic007G188200 Sobic007G188200 Sobic003G282700--Sobic007G188200 Sobic003G282700--Sobic003G349000 Sobic010G241600 Sobic010G241600 Sobic003G282700--Sobic010G241600 Sobic003G282700--Sobic007G053700 Sobic004G027700 Sobic004G027700 Sobic003G282700--Sobic004G027700 Sobic003G072500 Sobic003G072500 Sobic003G282700--Sobic003G072500 Sobic003G282700--Sobic002G154400 Sobic001G177400 Sobic001G177400 Sobic003G282700--Sobic001G177400 Sobic010G237800 Sobic010G237800 Sobic003G282700--Sobic010G237800 Sobic001G088900 Sobic001G088900 Sobic001G261585--Sobic001G088900 Sobic009G253400 Sobic009G253400 Sobic001G261585--Sobic009G253400 Sobic003G420000 Sobic003G420000 Sobic001G261585--Sobic003G420000 Sobic001G367100 Sobic001G367100 Sobic001G261585--Sobic001G367100 Sobic001G261585--Sobic009G235200 Sobic006G059500 Sobic006G059500 Sobic001G261585--Sobic006G059500 Sobic005G168300 Sobic005G168300 Sobic001G261585--Sobic005G168300 Sobic007G030000 Sobic007G030000 Sobic001G261585--Sobic007G030000 Sobic001G187800 Sobic001G187800 Sobic001G261585--Sobic001G187800 Sobic006G251900 Sobic006G251900 Sobic009G083400--Sobic006G251900 Sobic010G224300 Sobic010G224300 Sobic009G083400--Sobic010G224300 Sobic002G127100 Sobic002G127100 Sobic009G083400--Sobic002G127100 Sobic009G083400--Sobic007G004000 Sobic004G102000 Sobic004G102000 Sobic009G083400--Sobic004G102000 Sobic004G216500 Sobic004G216500 Sobic009G083400--Sobic004G216500 Sobic006G161000 Sobic006G161000 Sobic009G083400--Sobic006G161000 Sobic002G278000 Sobic002G278000 Sobic009G083400--Sobic002G278000 Sobic001G347300 Sobic001G347300 Sobic009G083400--Sobic001G347300 Sobic003G023400 Sobic003G023400 Sobic001G393401--Sobic003G023400 Sobic001G384700 Sobic001G384700 Sobic001G393401--Sobic001G384700 Sobic002G216600 Sobic002G216600 Sobic001G393401--Sobic002G216600 Sobic002G060450 Sobic002G060450 Sobic001G393401--Sobic002G060450 Sobic010G190400 Sobic010G190400 Sobic001G393401--Sobic010G190400 Sobic005G204100 Sobic005G204100 Sobic001G393401--Sobic005G204100 Sobic001G184400 Sobic001G184400 Sobic001G393401--Sobic001G184400 Sobic002G049000 Sobic002G049000 Sobic001G393401--Sobic002G049000 Sobic004G052800 Sobic004G052800 Sobic001G393401--Sobic004G052800 Sobic006G212500 Sobic006G212500 Sobic010G087000--Sobic006G212500 Sobic010G087000--Sobic002G053200 Sobic004G217900 Sobic004G217900 Sobic010G087000--Sobic004G217900 Sobic003G292932 Sobic003G292932 Sobic010G087000--Sobic003G292932 Sobic002G042900 Sobic002G042900 Sobic010G087000--Sobic002G042900 Sobic003G237100 Sobic003G237100 Sobic010G087000--Sobic003G237100 Sobic001G299800 Sobic001G299800 Sobic010G087000--Sobic001G299800 Sobic002G059800 Sobic002G059800 Sobic010G087000--Sobic002G059800 Sobic001G152360 Sobic001G152360 Sobic010G087000--Sobic001G152360 Sobic009G042100 Sobic009G042100 Sobic002G154400--Sobic009G042100 Sobic002G154400--Sobic007G039300 Sobic002G154400--Sobic007G053700 Sobic002G154400--Sobic003G349000 Sobic010G240800 Sobic010G240800 Sobic002G154400--Sobic010G240800 Sobic004G020900 Sobic004G020900 Sobic002G154400--Sobic004G020900 Sobic009G032200 Sobic009G032200 Sobic002G154400--Sobic009G032200 Sobic008G017900 Sobic008G017900 Sobic002G154400--Sobic008G017900 Sobic009G069200 Sobic009G069200 Sobic002G154400--Sobic009G069200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.