Gene annotation
Transcriptome id Sobic.004G102000.1,Sobic.004G102000.2
Synonym Sb04g008340
Functional annotation expressed protein
UniProt A0A194YPW1
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology K13172; SRRM2, serine/arginine repetitive matrix protein 2
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os04g51960.1 : expressed protein
MaizeGDB (Corn) Zm00025a034493 , Zm00025a036685
Brachypodium KQJ84468 , KQJ84469
Barley HORVU2Hr1G100290.3 , HORVU2Hr1G100290.1
Wheat TraesCS2D02G427400 , TraesCS2A02G429800 , TraesCS2B02G450700 , TraesCS5D02G504700 , TraesCS5B02G503900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G224300 peptidyl-prolyl cis-trans isomerase-like 4, putative, expressed K12735: peptidyl-prolyl cis-trans isomerase-like 4
2 Sobic.009G083400 RNA recognition motif family protein, expressed -
3 Sobic.008G106000 eukaryotic translation initiation factor 5B, putative, expressed K03243: translation initiation factor 5B
4 Sobic.006G251900 - -
5 Sobic.001G473000 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
6 Sobic.001G174900 DEK C terminal domain containing protein, expressed K17046: protein DEK
7 Sobic.004G094500 histone deacetylase, putative, expressed K11418: histone deacetylase 11
8 Sobic.007G043500 DNA topoisomerase 1, putative, expressed K03163: DNA topoisomerase I
9 Sobic.007G143300 expressed protein -
10 Sobic.006G123900 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
11 Sobic.005G059100 bromodomain domain containing protein, expressed -
12 Sobic.001G393401 - -
13 Sobic.003G038500 SSRP1-like FACT complex subunit, putative, expressed K09272: structure-specific recognition protein 1
14 Sobic.004G216500 hypothetical protein -
15 Sobic.002G053200 RNA recognition motif containing protein, expressed -
16 Sobic.008G078100 EDM2, putative, expressed -
17 Sobic.001G544200 endonuclease, putative, expressed K10848: ERCC4, DNA excision repair protein ERCC-4
18 Sobic.003G128600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNAJ heat shock N-terminal domain-containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
19 Sobic.007G216900 coiled-coil domain containing 49, putative, expressed -
20 Sobic.005G143300 expressed protein -


Gene co-expression network
sample Sobic004G102000 Sobic004G102000 Sobic010G224300 Sobic010G224300 Sobic004G102000--Sobic010G224300 Sobic009G083400 Sobic009G083400 Sobic004G102000--Sobic009G083400 Sobic008G106000 Sobic008G106000 Sobic004G102000--Sobic008G106000 Sobic006G251900 Sobic006G251900 Sobic004G102000--Sobic006G251900 Sobic001G473000 Sobic001G473000 Sobic004G102000--Sobic001G473000 Sobic001G174900 Sobic001G174900 Sobic004G102000--Sobic001G174900 Sobic004G094500 Sobic004G094500 Sobic004G102000--Sobic004G094500 Sobic007G043500 Sobic007G043500 Sobic004G102000--Sobic007G043500 Sobic007G143300 Sobic007G143300 Sobic004G102000--Sobic007G143300 Sobic010G224300--Sobic004G102000 Sobic010G224300--Sobic008G106000 Sobic001G544200 Sobic001G544200 Sobic010G224300--Sobic001G544200 Sobic006G123900 Sobic006G123900 Sobic010G224300--Sobic006G123900 Sobic008G078100 Sobic008G078100 Sobic010G224300--Sobic008G078100 Sobic001G511500 Sobic001G511500 Sobic010G224300--Sobic001G511500 Sobic010G224300--Sobic006G251900 Sobic002G077200 Sobic002G077200 Sobic010G224300--Sobic002G077200 Sobic010G224300--Sobic004G094500 Sobic009G083400--Sobic006G251900 Sobic009G083400--Sobic010G224300 Sobic002G127100 Sobic002G127100 Sobic009G083400--Sobic002G127100 Sobic007G004000 Sobic007G004000 Sobic009G083400--Sobic007G004000 Sobic009G083400--Sobic004G102000 Sobic004G216500 Sobic004G216500 Sobic009G083400--Sobic004G216500 Sobic006G161000 Sobic006G161000 Sobic009G083400--Sobic006G161000 Sobic002G278000 Sobic002G278000 Sobic009G083400--Sobic002G278000 Sobic001G347300 Sobic001G347300 Sobic009G083400--Sobic001G347300 Sobic001G543900 Sobic001G543900 Sobic008G106000--Sobic001G543900 Sobic002G001600 Sobic002G001600 Sobic008G106000--Sobic002G001600 Sobic008G106000--Sobic006G123900 Sobic002G313300 Sobic002G313300 Sobic008G106000--Sobic002G313300 Sobic007G185900 Sobic007G185900 Sobic008G106000--Sobic007G185900 Sobic002G330400 Sobic002G330400 Sobic008G106000--Sobic002G330400 Sobic006G009400 Sobic006G009400 Sobic008G106000--Sobic006G009400 Sobic008G116500 Sobic008G116500 Sobic008G106000--Sobic008G116500 Sobic008G106000--Sobic002G077200 Sobic006G251900--Sobic001G347300 Sobic007G126600 Sobic007G126600 Sobic006G251900--Sobic007G126600 Sobic006G251900--Sobic009G083400 Sobic003G108700 Sobic003G108700 Sobic006G251900--Sobic003G108700 Sobic006G251900--Sobic001G511500 Sobic006G251900--Sobic004G216500 Sobic006G251900--Sobic002G127100 Sobic008G192600 Sobic008G192600 Sobic006G251900--Sobic008G192600 Sobic003G038500 Sobic003G038500 Sobic006G251900--Sobic003G038500 Sobic001G473000--Sobic009G083400 Sobic001G473000--Sobic004G102000 Sobic001G473000--Sobic001G174900 Sobic001G473000--Sobic010G224300 Sobic001G473000--Sobic006G251900 Sobic001G107900 Sobic001G107900 Sobic001G473000--Sobic001G107900 Sobic001G429800 Sobic001G429800 Sobic001G473000--Sobic001G429800 Sobic005G033300 Sobic005G033300 Sobic001G473000--Sobic005G033300 Sobic002G290300 Sobic002G290300 Sobic001G473000--Sobic002G290300 Sobic003G241800 Sobic003G241800 Sobic001G174900--Sobic003G241800 Sobic010G121500 Sobic010G121500 Sobic001G174900--Sobic010G121500 Sobic004G264300 Sobic004G264300 Sobic001G174900--Sobic004G264300 Sobic007G117400 Sobic007G117400 Sobic001G174900--Sobic007G117400 Sobic001G174900--Sobic007G126600 Sobic001G174900--Sobic001G107900 Sobic001G174900--Sobic006G251900 Sobic001G174900--Sobic004G216500 Sobic003G012100 Sobic003G012100 Sobic001G174900--Sobic003G012100 Sobic001G394400 Sobic001G394400 Sobic004G094500--Sobic001G394400 Sobic001G477800 Sobic001G477800 Sobic004G094500--Sobic001G477800 Sobic007G037900 Sobic007G037900 Sobic004G094500--Sobic007G037900 Sobic002G072000 Sobic002G072000 Sobic004G094500--Sobic002G072000 Sobic006G246900 Sobic006G246900 Sobic004G094500--Sobic006G246900 Sobic004G094500--Sobic008G078100 Sobic006G048775 Sobic006G048775 Sobic004G094500--Sobic006G048775 Sobic002G151600 Sobic002G151600 Sobic004G094500--Sobic002G151600 Sobic005G110523 Sobic005G110523 Sobic004G094500--Sobic005G110523 Sobic005G059100 Sobic005G059100 Sobic007G043500--Sobic005G059100 Sobic002G159200 Sobic002G159200 Sobic007G043500--Sobic002G159200 Sobic007G043500--Sobic006G123900 Sobic002G067800 Sobic002G067800 Sobic007G043500--Sobic002G067800 Sobic010G194700 Sobic010G194700 Sobic007G043500--Sobic010G194700 Sobic001G405300 Sobic001G405300 Sobic007G043500--Sobic001G405300 Sobic008G073000 Sobic008G073000 Sobic007G043500--Sobic008G073000 Sobic006G080300 Sobic006G080300 Sobic007G043500--Sobic006G080300 Sobic007G043500--Sobic008G106000 Sobic007G143300--Sobic008G106000 Sobic002G166600 Sobic002G166600 Sobic007G143300--Sobic002G166600 Sobic007G089600 Sobic007G089600 Sobic007G143300--Sobic007G089600 Sobic007G143300--Sobic002G001600 Sobic002G181450 Sobic002G181450 Sobic007G143300--Sobic002G181450 Sobic007G143300--Sobic008G116500 Sobic003G015000 Sobic003G015000 Sobic007G143300--Sobic003G015000 Sobic001G202266 Sobic001G202266 Sobic007G143300--Sobic001G202266 Sobic007G143300--Sobic004G102000
Octagon: transcription factors


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