Gene annotation
Transcriptome id Sobic.001G473000.1
Synonym Sb01g044300
Functional annotation pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed
UniProt C5WUR3
Pfam PF00270 PF00271 PF00575 PF04408 PF07717
Panther DB PTHR18934 PTHR18934:SF120
NCBI CDD -
KEGG Orthology K12818; DHX8, ATP-dependent RNA helicase DHX8/PRP22
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding GO:0004386helicase activity


Orthologs (automatic annotation)
TAIR AT3G26560 : ATP-dependent RNA helicase, putative
RAP-DB (Rice) LOC_Os02g19860.1 : pre-mRNA-splicing factor ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a019705 , Zm00025a048761
Brachypodium KQJ94824
Barley HORVU0Hr1G007860.1 , HORVU0Hr1G007860.2
Wheat TraesCS4A02G158200 , TraesCS4D02G147900 , TraesCS4B02G148500 , TraesCS4B02G148500 , TraesCS4D02G147900
Populus -


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cDNA sequences
Sobic.001G473000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G083400 RNA recognition motif family protein, expressed -
2 Sobic.004G102000 expressed protein K13172: SRRM2, serine/arginine repetitive matrix protein 2
3 Sobic.001G174900 DEK C terminal domain containing protein, expressed K17046: protein DEK
4 Sobic.010G224300 peptidyl-prolyl cis-trans isomerase-like 4, putative, expressed K12735: peptidyl-prolyl cis-trans isomerase-like 4
5 Sobic.006G251900 - -
6 Sobic.001G107900 fip1 motif family protein, expressed -
7 Sobic.001G429800 heat shock protein DnaJ, putative, expressed K09528: DnaJ homolog subfamily C member 8
8 Sobic.005G033300 microfibrillar-associated protein 1, putative, expressed K13110: microfibrillar-associated protein 1
9 Sobic.002G290300 zinc finger Ran-binding domain-containing protein 2, putative, expressed -
10 Sobic.007G216900 coiled-coil domain containing 49, putative, expressed -
11 Sobic.004G020700 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12893: splicing factor, arginine/serine-rich 4/5/6
12 Sobic.002G127100 RNA-binding protein Luc7-like, putative, expressed -
13 Sobic.007G222900 RNA recognition motif family protein, expressed K14398: cleavage and polyadenylation specificity factor subunit 6/7
14 Sobic.004G216500 hypothetical protein -
15 Sobic.001G465300 splicing factor, putative, expressed -
16 Sobic.003G038500 SSRP1-like FACT complex subunit, putative, expressed K09272: structure-specific recognition protein 1
17 Sobic.002G009800 VIP4, putative, expressed K15177: RNA polymerase-associated protein LEO1
18 Sobic.002G277600 XAP5 family protein, putative, expressed K13119: FAM50, protein FAM50
19 Sobic.007G053700 MYB family transcription factor, putative, expressed -
20 Sobic.004G151700 cyclin-L1-1, putative, expressed -


Gene co-expression network
sample Sobic001G473000 Sobic001G473000 Sobic009G083400 Sobic009G083400 Sobic001G473000--Sobic009G083400 Sobic004G102000 Sobic004G102000 Sobic001G473000--Sobic004G102000 Sobic001G174900 Sobic001G174900 Sobic001G473000--Sobic001G174900 Sobic010G224300 Sobic010G224300 Sobic001G473000--Sobic010G224300 Sobic006G251900 Sobic006G251900 Sobic001G473000--Sobic006G251900 Sobic001G107900 Sobic001G107900 Sobic001G473000--Sobic001G107900 Sobic001G429800 Sobic001G429800 Sobic001G473000--Sobic001G429800 Sobic005G033300 Sobic005G033300 Sobic001G473000--Sobic005G033300 Sobic002G290300 Sobic002G290300 Sobic001G473000--Sobic002G290300 Sobic009G083400--Sobic006G251900 Sobic009G083400--Sobic010G224300 Sobic002G127100 Sobic002G127100 Sobic009G083400--Sobic002G127100 Sobic007G004000 Sobic007G004000 Sobic009G083400--Sobic007G004000 Sobic009G083400--Sobic004G102000 Sobic004G216500 Sobic004G216500 Sobic009G083400--Sobic004G216500 Sobic006G161000 Sobic006G161000 Sobic009G083400--Sobic006G161000 Sobic002G278000 Sobic002G278000 Sobic009G083400--Sobic002G278000 Sobic001G347300 Sobic001G347300 Sobic009G083400--Sobic001G347300 Sobic004G102000--Sobic010G224300 Sobic004G102000--Sobic009G083400 Sobic008G106000 Sobic008G106000 Sobic004G102000--Sobic008G106000 Sobic004G102000--Sobic006G251900 Sobic004G102000--Sobic001G473000 Sobic004G102000--Sobic001G174900 Sobic004G094500 Sobic004G094500 Sobic004G102000--Sobic004G094500 Sobic007G043500 Sobic007G043500 Sobic004G102000--Sobic007G043500 Sobic007G143300 Sobic007G143300 Sobic004G102000--Sobic007G143300 Sobic003G241800 Sobic003G241800 Sobic001G174900--Sobic003G241800 Sobic010G121500 Sobic010G121500 Sobic001G174900--Sobic010G121500 Sobic004G264300 Sobic004G264300 Sobic001G174900--Sobic004G264300 Sobic007G117400 Sobic007G117400 Sobic001G174900--Sobic007G117400 Sobic007G126600 Sobic007G126600 Sobic001G174900--Sobic007G126600 Sobic001G174900--Sobic001G107900 Sobic001G174900--Sobic006G251900 Sobic001G174900--Sobic004G216500 Sobic003G012100 Sobic003G012100 Sobic001G174900--Sobic003G012100 Sobic010G224300--Sobic004G102000 Sobic010G224300--Sobic008G106000 Sobic001G544200 Sobic001G544200 Sobic010G224300--Sobic001G544200 Sobic006G123900 Sobic006G123900 Sobic010G224300--Sobic006G123900 Sobic008G078100 Sobic008G078100 Sobic010G224300--Sobic008G078100 Sobic001G511500 Sobic001G511500 Sobic010G224300--Sobic001G511500 Sobic010G224300--Sobic006G251900 Sobic002G077200 Sobic002G077200 Sobic010G224300--Sobic002G077200 Sobic010G224300--Sobic004G094500 Sobic006G251900--Sobic001G347300 Sobic006G251900--Sobic007G126600 Sobic006G251900--Sobic009G083400 Sobic003G108700 Sobic003G108700 Sobic006G251900--Sobic003G108700 Sobic006G251900--Sobic001G511500 Sobic006G251900--Sobic004G216500 Sobic006G251900--Sobic002G127100 Sobic008G192600 Sobic008G192600 Sobic006G251900--Sobic008G192600 Sobic003G038500 Sobic003G038500 Sobic006G251900--Sobic003G038500 Sobic001G542700 Sobic001G542700 Sobic001G107900--Sobic001G542700 Sobic001G107900--Sobic004G216500 Sobic009G138800 Sobic009G138800 Sobic001G107900--Sobic009G138800 Sobic004G065100 Sobic004G065100 Sobic001G107900--Sobic004G065100 Sobic001G107900--Sobic008G192600 Sobic001G014100 Sobic001G014100 Sobic001G107900--Sobic001G014100 Sobic001G241200 Sobic001G241200 Sobic001G107900--Sobic001G241200 Sobic001G107900--Sobic007G117400 Sobic002G277600 Sobic002G277600 Sobic001G107900--Sobic002G277600 Sobic001G429800--Sobic001G473000 Sobic001G370500 Sobic001G370500 Sobic001G429800--Sobic001G370500 Sobic001G429800--Sobic004G102000 Sobic010G269500 Sobic010G269500 Sobic001G429800--Sobic010G269500 Sobic003G037900 Sobic003G037900 Sobic001G429800--Sobic003G037900 Sobic004G237700 Sobic004G237700 Sobic001G429800--Sobic004G237700 Sobic004G153200 Sobic004G153200 Sobic001G429800--Sobic004G153200 Sobic001G429800--Sobic001G174900 Sobic003G189800 Sobic003G189800 Sobic001G429800--Sobic003G189800 Sobic001G053800 Sobic001G053800 Sobic005G033300--Sobic001G053800 Sobic005G196900 Sobic005G196900 Sobic005G033300--Sobic005G196900 Sobic007G222800 Sobic007G222800 Sobic005G033300--Sobic007G222800 Sobic007G216900 Sobic007G216900 Sobic005G033300--Sobic007G216900 Sobic002G180000 Sobic002G180000 Sobic005G033300--Sobic002G180000 Sobic002G224700 Sobic002G224700 Sobic005G033300--Sobic002G224700 Sobic005G033300--Sobic004G153200 Sobic005G033300--Sobic004G264300 Sobic009G162200 Sobic009G162200 Sobic005G033300--Sobic009G162200 Sobic007G222900 Sobic007G222900 Sobic002G290300--Sobic007G222900 Sobic002G040800 Sobic002G040800 Sobic002G290300--Sobic002G040800 Sobic010G171100 Sobic010G171100 Sobic002G290300--Sobic010G171100 Sobic002G290300--Sobic001G107900 Sobic010G228700 Sobic010G228700 Sobic002G290300--Sobic010G228700 Sobic004G237100 Sobic004G237100 Sobic002G290300--Sobic004G237100 Sobic009G094800 Sobic009G094800 Sobic002G290300--Sobic009G094800 Sobic004G010101 Sobic004G010101 Sobic002G290300--Sobic004G010101 Sobic005G084400 Sobic005G084400 Sobic002G290300--Sobic005G084400
Octagon: transcription factors


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