Gene annotation
Transcriptome id Sobic.004G151700.1
Synonym RCY1, Sb04g020170, ATRCY1
Functional annotation cyclin-L1-1, putative, expressed
UniProt A0A194YPY5 , A0A097PSM9
Pfam PF00134
Panther DB PTHR10026 PTHR10026:SF13
NCBI CDD KOG0835; Cyclin L
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0000079regulation of cyclin-dependent protein serine/threonine kinase activity


Orthologs (automatic annotation)
TAIR AT2G26430 : arginine-rich cyclin 1
RAP-DB (Rice) LOC_Os01g27940.1 : cyclin-L1-1, putative, expressed
MaizeGDB (Corn) Zm00025a007019 , Zm00025a045950 , Zm00025a045946
Brachypodium KQK20555 , KQK16619 , KQK16618 , KQK16617
Barley HORVU6Hr1G080430.5 , HORVU6Hr1G080430.4 , HORVU6Hr1G080430.1 , HORVU6Hr1G080430.3 , HORVU6Hr1G080430.2
Wheat TraesCS6A02G331500 , TraesCS6D02G310800 , TraesCS6D02G310800 , TraesCS6B02G362300
Populus -


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cDNA sequences
Sobic.004G151700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G245400 -(PubMedID : 34525227)@NADPH reductase, putative, expressed K00327: NADPH-ferrihemoprotein reductase
2 Sobic.004G216500 hypothetical protein -
3 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
4 Sobic.007G172400 AAA-type ATPase family protein, putative, expressed K13338: peroxin-1
5 Sobic.004G257400 WD-40 repeat family protein, putative, expressed -
6 Sobic.006G182200 WD domain, G-beta repeat domain containing protein, expressed -
7 Sobic.007G119200 intracellular protein transport protein USO1-related, putative, expressed -
8 Sobic.003G038500 SSRP1-like FACT complex subunit, putative, expressed K09272: structure-specific recognition protein 1
9 Sobic.001G509500 glutamyl-tRNA synthetase, cytoplasmic, putative, expressed K01885: EARS, glutamyl-tRNA synthetase
10 Sobic.001G535800 DNA methyltransferase protein, putative, expressed -
11 Sobic.010G040800 RNA recognition motif containing protein, putative, expressed -
12 Sobic.001G017800 vacuolar sorting protein, putative, expressed -
13 Sobic.007G126600 RNA recognition motif containing protein, putative, expressed K12822: RBM25, RNA-binding protein 25
14 Sobic.009G135800 CUE domain containing protein, expressed -
15 Sobic.006G161000 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2
16 Sobic.001G107900 fip1 motif family protein, expressed -
17 Sobic.007G026000 ATBET9, putative, expressed -
18 Sobic.005G059100 bromodomain domain containing protein, expressed -
19 Sobic.008G192600 serine/threonine-protein kinase PRP4, putative, expressed K08827: serine/threonine-protein kinase PRP4
20 Sobic.003G093800 - K03254: translation initiation factor 3 subunit A


Gene co-expression network
sample Sobic004G151700 Sobic004G151700 Sobic006G245400 Sobic006G245400 Sobic004G151700--Sobic006G245400 Sobic004G216500 Sobic004G216500 Sobic004G151700--Sobic004G216500 Sobic003G119000 Sobic003G119000 Sobic004G151700--Sobic003G119000 Sobic007G172400 Sobic007G172400 Sobic004G151700--Sobic007G172400 Sobic004G257400 Sobic004G257400 Sobic004G151700--Sobic004G257400 Sobic006G182200 Sobic006G182200 Sobic004G151700--Sobic006G182200 Sobic007G119200 Sobic007G119200 Sobic004G151700--Sobic007G119200 Sobic003G038500 Sobic003G038500 Sobic004G151700--Sobic003G038500 Sobic001G509500 Sobic001G509500 Sobic004G151700--Sobic001G509500 Sobic002G340100 Sobic002G340100 Sobic006G245400--Sobic002G340100 Sobic006G245400--Sobic007G172400 Sobic004G052900 Sobic004G052900 Sobic006G245400--Sobic004G052900 Sobic004G113400 Sobic004G113400 Sobic006G245400--Sobic004G113400 Sobic001G114000 Sobic001G114000 Sobic006G245400--Sobic001G114000 Sobic006G237400 Sobic006G237400 Sobic006G245400--Sobic006G237400 Sobic007G217000 Sobic007G217000 Sobic006G245400--Sobic007G217000 Sobic001G065000 Sobic001G065000 Sobic006G245400--Sobic001G065000 Sobic001G474600 Sobic001G474600 Sobic006G245400--Sobic001G474600 Sobic008G054500 Sobic008G054500 Sobic004G216500--Sobic008G054500 Sobic007G126600 Sobic007G126600 Sobic004G216500--Sobic007G126600 Sobic001G511500 Sobic001G511500 Sobic004G216500--Sobic001G511500 Sobic004G216500--Sobic003G119000 Sobic009G138800 Sobic009G138800 Sobic004G216500--Sobic009G138800 Sobic003G108700 Sobic003G108700 Sobic004G216500--Sobic003G108700 Sobic008G192600 Sobic008G192600 Sobic004G216500--Sobic008G192600 Sobic007G167500 Sobic007G167500 Sobic004G216500--Sobic007G167500 Sobic001G107900 Sobic001G107900 Sobic004G216500--Sobic001G107900 Sobic003G372700 Sobic003G372700 Sobic003G119000--Sobic003G372700 Sobic002G071500 Sobic002G071500 Sobic003G119000--Sobic002G071500 Sobic003G280800 Sobic003G280800 Sobic003G119000--Sobic003G280800 Sobic007G065400 Sobic007G065400 Sobic003G119000--Sobic007G065400 Sobic003G119000--Sobic007G167500 Sobic003G119000--Sobic007G126600 Sobic003G119000--Sobic001G511500 Sobic002G309600 Sobic002G309600 Sobic003G119000--Sobic002G309600 Sobic001G241200 Sobic001G241200 Sobic003G119000--Sobic001G241200 Sobic001G058700 Sobic001G058700 Sobic007G172400--Sobic001G058700 Sobic007G172400--Sobic002G071500 Sobic001G050600 Sobic001G050600 Sobic007G172400--Sobic001G050600 Sobic004G347400 Sobic004G347400 Sobic007G172400--Sobic004G347400 Sobic002G419800 Sobic002G419800 Sobic007G172400--Sobic002G419800 Sobic001G219900 Sobic001G219900 Sobic007G172400--Sobic001G219900 Sobic007G172400--Sobic004G113400 Sobic007G172400--Sobic001G474600 Sobic003G408600 Sobic003G408600 Sobic007G172400--Sobic003G408600 Sobic002G248400 Sobic002G248400 Sobic004G257400--Sobic002G248400 Sobic004G257400--Sobic003G108700 Sobic004G257400--Sobic008G054500 Sobic003G445400 Sobic003G445400 Sobic004G257400--Sobic003G445400 Sobic007G026300 Sobic007G026300 Sobic004G257400--Sobic007G026300 Sobic003G073000 Sobic003G073000 Sobic004G257400--Sobic003G073000 Sobic001G090400 Sobic001G090400 Sobic004G257400--Sobic001G090400 Sobic004G257400--Sobic007G167500 Sobic001G251700 Sobic001G251700 Sobic004G257400--Sobic001G251700 Sobic004G274200 Sobic004G274200 Sobic006G182200--Sobic004G274200 Sobic001G473600 Sobic001G473600 Sobic006G182200--Sobic001G473600 Sobic001G016000 Sobic001G016000 Sobic006G182200--Sobic001G016000 Sobic004G353000 Sobic004G353000 Sobic006G182200--Sobic004G353000 Sobic001G360200 Sobic001G360200 Sobic006G182200--Sobic001G360200 Sobic010G116600 Sobic010G116600 Sobic006G182200--Sobic010G116600 Sobic001G466700 Sobic001G466700 Sobic006G182200--Sobic001G466700 Sobic004G339100 Sobic004G339100 Sobic006G182200--Sobic004G339100 Sobic002G283600 Sobic002G283600 Sobic006G182200--Sobic002G283600 Sobic002G034600 Sobic002G034600 Sobic007G119200--Sobic002G034600 Sobic004G146500 Sobic004G146500 Sobic007G119200--Sobic004G146500 Sobic008G153000 Sobic008G153000 Sobic007G119200--Sobic008G153000 Sobic001G109800 Sobic001G109800 Sobic007G119200--Sobic001G109800 Sobic007G041500 Sobic007G041500 Sobic007G119200--Sobic007G041500 Sobic010G069100 Sobic010G069100 Sobic007G119200--Sobic010G069100 Sobic007G218000 Sobic007G218000 Sobic007G119200--Sobic007G218000 Sobic002G264200 Sobic002G264200 Sobic007G119200--Sobic002G264200 Sobic001G088100 Sobic001G088100 Sobic007G119200--Sobic001G088100 Sobic010G209400 Sobic010G209400 Sobic003G038500--Sobic010G209400 Sobic003G038500--Sobic007G126600 Sobic003G422300 Sobic003G422300 Sobic003G038500--Sobic003G422300 Sobic003G038500--Sobic004G257400 Sobic003G038500--Sobic007G026300 Sobic003G038500--Sobic001G090400 Sobic003G038500--Sobic003G119000 Sobic003G038500--Sobic002G248400 Sobic003G038500--Sobic001G511500 Sobic003G004300 Sobic003G004300 Sobic001G509500--Sobic003G004300 Sobic008G098300 Sobic008G098300 Sobic001G509500--Sobic008G098300 Sobic001G509500--Sobic006G182200 Sobic003G188500 Sobic003G188500 Sobic001G509500--Sobic003G188500 Sobic001G008200 Sobic001G008200 Sobic001G509500--Sobic001G008200 Sobic004G264400 Sobic004G264400 Sobic001G509500--Sobic004G264400 Sobic009G056200 Sobic009G056200 Sobic001G509500--Sobic009G056200 Sobic004G048800 Sobic004G048800 Sobic001G509500--Sobic004G048800 Sobic006G200700 Sobic006G200700 Sobic001G509500--Sobic006G200700
Octagon: transcription factors


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