Gene annotation
Transcriptome id Sobic.006G161000.3,Sobic.006G161000.1,Sobic.006G161000.4
Synonym GRIK2, ATSNAK1, Sb06g023790
Functional annotation CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
UniProt A0A1Z5RE94 , C5YCY7
Pfam PF14531 PF07714
Panther DB PTHR24347 PTHR24347:SF1
NCBI CDD KOG0583; Serine/threonine protein kinase
KEGG Orthology K07359; calcium/calmodulin-dependent protein kinase kinase 2
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT3G45240 : geminivirus rep interacting kinase 1,geminivirus rep interacting kinase 2
RAP-DB (Rice) LOC_Os03g50330.1 : CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MaizeGDB (Corn) Zm00025a056603 , Zm00025a010425
Brachypodium KQK13614
Barley HORVU1Hr1G094990.23 , HORVU1Hr1G094990.21 , HORVU1Hr1G094990.20 , HORVU1Hr1G094990.16 , HORVU1Hr1G094990.17 , HORVU1Hr1G094990.14 , HORVU1Hr1G094990.15 , HORVU1Hr1G094990.12 , HORVU1Hr1G094990.13 , HORVU1Hr1G094990.10 , HORVU1Hr1G094990.18 , HORVU4Hr1G007440.9 , HORVU4Hr1G007440.6 , HORVU4Hr1G007440.5 , HORVU4Hr1G007440.3 , HORVU4Hr1G007440.1 , HORVU1Hr1G094990.24 , HORVU1Hr1G094990.11 , HORVU4Hr1G007440.17 , HORVU4Hr1G007440.15 , HORVU4Hr1G007440.14 , HORVU4Hr1G007440.12 , HORVU4Hr1G007440.18 , HORVU1Hr1G094990.8 , HORVU1Hr1G094990.9 , HORVU4Hr1G007440.21 , HORVU1Hr1G094990.4 , HORVU1Hr1G094990.5 , HORVU1Hr1G094990.6 , HORVU1Hr1G094990.1 , HORVU1Hr1G094990.2 , HORVU1Hr1G094990.3
Wheat TraesCS4B02G046100 , TraesCS4D02G045900 , TraesCS4A02G268200 , TraesCS1A02G443100 , TraesCS1B02G477300 , TraesCS1D02G451100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G161000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G038100 glutaminyl-tRNA synthetase, putative, expressed K01886: QARS, glutaminyl-tRNA synthetase
2 Sobic.004G049700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
3 Sobic.001G405300 6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed -
4 Sobic.006G186400 ZOS4-12 - C2H2 zinc finger protein, expressed -
5 Sobic.010G077500 protein of unknown function DUF1296 domain containing protein, expressed -
6 Sobic.007G026000 ATBET9, putative, expressed -
7 Sobic.003G114500 zinc knuckle family protein, putative, expressed -
8 Sobic.004G180900 PSP domain containing protein, expressed K13128: zinc finger CCHC domain-containing protein 8
9 Sobic.007G146900 ARID/BRIGHT DNA-binding domain containing protein, expressed -
10 Sobic.001G066300 cell cycle control protein, putative, expressed -
11 Sobic.002G127100 RNA-binding protein Luc7-like, putative, expressed -
12 Sobic.005G207500 AAA-type ATPase family protein, putative, expressed -
13 Sobic.002G153700 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
14 Sobic.002G159200 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
15 Sobic.008G058800 OsFBX369 - F-box domain containing protein, expressed -
16 Sobic.004G129300 chromatin modification-related protein EAF3, putative, expressed K11339: MORF4L1, MRG15, mortality factor 4-like protein 1
17 Sobic.002G353600 expressed protein -
18 Sobic.007G090430 - -
19 Sobic.003G160000 SUMO protease, putative, expressed K08592: sentrin-specific protease 1
20 Sobic.001G026200 heat shock protein DnaJ, putative, expressed K09534: DnaJ homolog subfamily C member 14


Gene co-expression network
sample Sobic006G161000 Sobic006G161000 Sobic003G038100 Sobic003G038100 Sobic006G161000--Sobic003G038100 Sobic004G049700 Sobic004G049700 Sobic006G161000--Sobic004G049700 Sobic001G405300 Sobic001G405300 Sobic006G161000--Sobic001G405300 Sobic006G186400 Sobic006G186400 Sobic006G161000--Sobic006G186400 Sobic010G077500 Sobic010G077500 Sobic006G161000--Sobic010G077500 Sobic007G026000 Sobic007G026000 Sobic006G161000--Sobic007G026000 Sobic003G114500 Sobic003G114500 Sobic006G161000--Sobic003G114500 Sobic004G180900 Sobic004G180900 Sobic006G161000--Sobic004G180900 Sobic007G146900 Sobic007G146900 Sobic006G161000--Sobic007G146900 Sobic003G038100--Sobic006G161000 Sobic004G311400 Sobic004G311400 Sobic003G038100--Sobic004G311400 Sobic004G088200 Sobic004G088200 Sobic003G038100--Sobic004G088200 Sobic003G438900 Sobic003G438900 Sobic003G038100--Sobic003G438900 Sobic003G394300 Sobic003G394300 Sobic003G038100--Sobic003G394300 Sobic003G194500 Sobic003G194500 Sobic003G038100--Sobic003G194500 Sobic005G207500 Sobic005G207500 Sobic003G038100--Sobic005G207500 Sobic002G029100 Sobic002G029100 Sobic003G038100--Sobic002G029100 Sobic004G237100 Sobic004G237100 Sobic003G038100--Sobic004G237100 Sobic001G424600 Sobic001G424600 Sobic004G049700--Sobic001G424600 Sobic002G063900 Sobic002G063900 Sobic004G049700--Sobic002G063900 Sobic002G148400 Sobic002G148400 Sobic004G049700--Sobic002G148400 Sobic006G039800 Sobic006G039800 Sobic004G049700--Sobic006G039800 Sobic002G154000 Sobic002G154000 Sobic004G049700--Sobic002G154000 Sobic004G049700--Sobic006G161000 Sobic001G346900 Sobic001G346900 Sobic004G049700--Sobic001G346900 Sobic001G461400 Sobic001G461400 Sobic004G049700--Sobic001G461400 Sobic007G004000 Sobic007G004000 Sobic004G049700--Sobic007G004000 Sobic006G046700 Sobic006G046700 Sobic001G405300--Sobic006G046700 Sobic001G405300--Sobic007G026000 Sobic002G159200 Sobic002G159200 Sobic001G405300--Sobic002G159200 Sobic001G405300--Sobic006G161000 Sobic005G059100 Sobic005G059100 Sobic001G405300--Sobic005G059100 Sobic007G043500 Sobic007G043500 Sobic001G405300--Sobic007G043500 Sobic006G013500 Sobic006G013500 Sobic001G405300--Sobic006G013500 Sobic001G405300--Sobic006G186400 Sobic004G031700 Sobic004G031700 Sobic001G405300--Sobic004G031700 Sobic008G153000 Sobic008G153000 Sobic006G186400--Sobic008G153000 Sobic001G176200 Sobic001G176200 Sobic006G186400--Sobic001G176200 Sobic004G067700 Sobic004G067700 Sobic006G186400--Sobic004G067700 Sobic008G173100 Sobic008G173100 Sobic006G186400--Sobic008G173100 Sobic007G056500 Sobic007G056500 Sobic006G186400--Sobic007G056500 Sobic002G260400 Sobic002G260400 Sobic006G186400--Sobic002G260400 Sobic006G186400--Sobic006G046700 Sobic003G073000 Sobic003G073000 Sobic006G186400--Sobic003G073000 Sobic001G408700 Sobic001G408700 Sobic006G186400--Sobic001G408700 Sobic001G042200 Sobic001G042200 Sobic010G077500--Sobic001G042200 Sobic006G049100 Sobic006G049100 Sobic010G077500--Sobic006G049100 Sobic004G345400 Sobic004G345400 Sobic010G077500--Sobic004G345400 Sobic007G187600 Sobic007G187600 Sobic010G077500--Sobic007G187600 Sobic003G212900 Sobic003G212900 Sobic010G077500--Sobic003G212900 Sobic008G058800 Sobic008G058800 Sobic010G077500--Sobic008G058800 Sobic010G077500--Sobic007G056500 Sobic010G077500--Sobic002G063900 Sobic009G129600 Sobic009G129600 Sobic010G077500--Sobic009G129600 Sobic007G026000--Sobic008G153000 Sobic007G026000--Sobic006G046700 Sobic007G026000--Sobic005G059100 Sobic003G445400 Sobic003G445400 Sobic007G026000--Sobic003G445400 Sobic009G119000 Sobic009G119000 Sobic007G026000--Sobic009G119000 Sobic002G153700 Sobic002G153700 Sobic007G026000--Sobic002G153700 Sobic001G206100 Sobic001G206100 Sobic007G026000--Sobic001G206100 Sobic007G026000--Sobic006G013500 Sobic007G026000--Sobic004G031700 Sobic009G151200 Sobic009G151200 Sobic003G114500--Sobic009G151200 Sobic002G383300 Sobic002G383300 Sobic003G114500--Sobic002G383300 Sobic003G114500--Sobic006G161000 Sobic003G114500--Sobic010G077500 Sobic003G114500--Sobic004G049700 Sobic003G114500--Sobic001G424600 Sobic003G114500--Sobic007G056500 Sobic003G114500--Sobic007G187600 Sobic003G114500--Sobic006G049100 Sobic009G017200 Sobic009G017200 Sobic004G180900--Sobic009G017200 Sobic004G180900--Sobic007G056500 Sobic001G425000 Sobic001G425000 Sobic004G180900--Sobic001G425000 Sobic004G180900--Sobic004G345400 Sobic004G180900--Sobic006G186400 Sobic004G180900--Sobic008G058800 Sobic004G180900--Sobic007G026000 Sobic004G180900--Sobic010G077500 Sobic003G381600 Sobic003G381600 Sobic004G180900--Sobic003G381600 Sobic002G353600 Sobic002G353600 Sobic007G146900--Sobic002G353600 Sobic007G146900--Sobic002G153700 Sobic002G264200 Sobic002G264200 Sobic007G146900--Sobic002G264200 Sobic007G146900--Sobic005G207500 Sobic007G146900--Sobic007G026000 Sobic007G146900--Sobic009G119000 Sobic007G119200 Sobic007G119200 Sobic007G146900--Sobic007G119200 Sobic008G054500 Sobic008G054500 Sobic007G146900--Sobic008G054500 Sobic003G397800 Sobic003G397800 Sobic007G146900--Sobic003G397800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.