Gene annotation
Transcriptome id Sobic.001G017800.2,Sobic.001G017800.1
Synonym VPS9, ATVPS9A, VPS9A
Functional annotation vacuolar sorting protein, putative, expressed
UniProt A0A1Z5S3Y4 , A0A1B6QGX3
Pfam PF02204
Panther DB PTHR23101 PTHR23101:SF63
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G19770 : Vacuolar sorting protein 9 (VPS9) domain
RAP-DB (Rice) LOC_Os03g62580.1 : vacuolar sorting protein, putative, expressed
MaizeGDB (Corn) Zm00025a008974 , Zm00025a012688
Brachypodium KQK12196 , KQK12197
Barley HORVU5Hr1G120090.11 , HORVU5Hr1G120090.10 , HORVU5Hr1G120090.13 , HORVU5Hr1G120090.12 , HORVU5Hr1G120090.15 , HORVU5Hr1G120090.14 , HORVU5Hr1G120090.17 , HORVU5Hr1G120090.16 , HORVU5Hr1G120090.19 , HORVU5Hr1G120090.18 , HORVU5Hr1G120090.5 , HORVU5Hr1G120090.4 , HORVU5Hr1G120090.7 , HORVU5Hr1G120090.6 , HORVU5Hr1G120090.1 , HORVU5Hr1G120090.3 , HORVU5Hr1G120090.2 , HORVU5Hr1G120090.9 , HORVU5Hr1G120090.8
Wheat TraesCS4A02G343800 , TraesCS4A02G343800 , TraesCS4A02G343800 , TraesCS5D02G529100 , TraesCS5D02G529100 , TraesCS5B02G530300 , TraesCS5B02G530100
Populus -


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cDNA sequences
Sobic.001G017800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
2 Sobic.007G119200 intracellular protein transport protein USO1-related, putative, expressed -
3 Sobic.007G041500 diacylglycerol kinase, putative, expressed -
4 Sobic.007G172400 AAA-type ATPase family protein, putative, expressed K13338: peroxin-1
5 Sobic.003G093800 - K03254: translation initiation factor 3 subunit A
6 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
7 Sobic.010G116600 FHA domain containing protein, putative, expressed -
8 Sobic.005G118600 NB-ARC domain containing protein, expressed -
9 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
10 Sobic.001G109800 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
11 Sobic.007G096000 expressed protein -
12 Sobic.001G026200 heat shock protein DnaJ, putative, expressed K09534: DnaJ homolog subfamily C member 14
13 Sobic.010G034000 zinc carboxypeptidase family protein, putative, expressed K07752: carboxypeptidase D
14 Sobic.003G225700 - -
15 Sobic.002G153700 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
16 Sobic.004G151700 cyclin-L1-1, putative, expressed -
17 Sobic.002G264200 RNA recognition motif containing protein, expressed -
18 Sobic.007G146900 ARID/BRIGHT DNA-binding domain containing protein, expressed -
19 Sobic.001G091400 expressed protein -
20 Sobic.001G016000 expressed protein K07759: poly(ADP-ribose) glycohydrolase


Gene co-expression network
sample Sobic001G017800 Sobic001G017800 Sobic002G071500 Sobic002G071500 Sobic001G017800--Sobic002G071500 Sobic007G119200 Sobic007G119200 Sobic001G017800--Sobic007G119200 Sobic007G041500 Sobic007G041500 Sobic001G017800--Sobic007G041500 Sobic007G172400 Sobic007G172400 Sobic001G017800--Sobic007G172400 Sobic003G093800 Sobic003G093800 Sobic001G017800--Sobic003G093800 Sobic001G058700 Sobic001G058700 Sobic001G017800--Sobic001G058700 Sobic010G116600 Sobic010G116600 Sobic001G017800--Sobic010G116600 Sobic005G118600 Sobic005G118600 Sobic001G017800--Sobic005G118600 Sobic003G119000 Sobic003G119000 Sobic001G017800--Sobic003G119000 Sobic005G112300 Sobic005G112300 Sobic002G071500--Sobic005G112300 Sobic003G408600 Sobic003G408600 Sobic002G071500--Sobic003G408600 Sobic008G009700 Sobic008G009700 Sobic002G071500--Sobic008G009700 Sobic002G071500--Sobic010G116600 Sobic001G026200 Sobic001G026200 Sobic002G071500--Sobic001G026200 Sobic002G153700 Sobic002G153700 Sobic002G071500--Sobic002G153700 Sobic010G069100 Sobic010G069100 Sobic002G071500--Sobic010G069100 Sobic002G071500--Sobic003G119000 Sobic010G201500 Sobic010G201500 Sobic002G071500--Sobic010G201500 Sobic002G034600 Sobic002G034600 Sobic007G119200--Sobic002G034600 Sobic004G146500 Sobic004G146500 Sobic007G119200--Sobic004G146500 Sobic008G153000 Sobic008G153000 Sobic007G119200--Sobic008G153000 Sobic001G109800 Sobic001G109800 Sobic007G119200--Sobic001G109800 Sobic007G119200--Sobic007G041500 Sobic007G119200--Sobic010G069100 Sobic007G218000 Sobic007G218000 Sobic007G119200--Sobic007G218000 Sobic002G264200 Sobic002G264200 Sobic007G119200--Sobic002G264200 Sobic001G088100 Sobic001G088100 Sobic007G119200--Sobic001G088100 Sobic007G041500--Sobic007G119200 Sobic009G148300 Sobic009G148300 Sobic007G041500--Sobic009G148300 Sobic010G034000 Sobic010G034000 Sobic007G041500--Sobic010G034000 Sobic007G041500--Sobic008G153000 Sobic001G091400 Sobic001G091400 Sobic007G041500--Sobic001G091400 Sobic004G246100 Sobic004G246100 Sobic007G041500--Sobic004G246100 Sobic004G072100 Sobic004G072100 Sobic007G041500--Sobic004G072100 Sobic007G041500--Sobic010G116600 Sobic007G041500--Sobic002G071500 Sobic007G172400--Sobic001G058700 Sobic007G172400--Sobic002G071500 Sobic001G050600 Sobic001G050600 Sobic007G172400--Sobic001G050600 Sobic004G347400 Sobic004G347400 Sobic007G172400--Sobic004G347400 Sobic002G419800 Sobic002G419800 Sobic007G172400--Sobic002G419800 Sobic001G219900 Sobic001G219900 Sobic007G172400--Sobic001G219900 Sobic004G113400 Sobic004G113400 Sobic007G172400--Sobic004G113400 Sobic001G474600 Sobic001G474600 Sobic007G172400--Sobic001G474600 Sobic007G172400--Sobic003G408600 Sobic003G093800--Sobic010G116600 Sobic001G065000 Sobic001G065000 Sobic003G093800--Sobic001G065000 Sobic003G093800--Sobic003G408600 Sobic001G536400 Sobic001G536400 Sobic003G093800--Sobic001G536400 Sobic003G093800--Sobic001G058700 Sobic002G299700 Sobic002G299700 Sobic003G093800--Sobic002G299700 Sobic009G044800 Sobic009G044800 Sobic003G093800--Sobic009G044800 Sobic003G093800--Sobic002G071500 Sobic009G249700 Sobic009G249700 Sobic003G093800--Sobic009G249700 Sobic001G058700--Sobic003G408600 Sobic001G058700--Sobic007G172400 Sobic001G058700--Sobic001G050600 Sobic007G062800 Sobic007G062800 Sobic001G058700--Sobic007G062800 Sobic001G540400 Sobic001G540400 Sobic001G058700--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic001G058700--Sobic005G008800 Sobic001G058700--Sobic004G347400 Sobic005G028600 Sobic005G028600 Sobic001G058700--Sobic005G028600 Sobic001G058700--Sobic001G219900 Sobic010G116600--Sobic002G071500 Sobic010G116600--Sobic002G299700 Sobic010G116600--Sobic003G093800 Sobic010G116600--Sobic009G044800 Sobic010G116600--Sobic004G072100 Sobic010G236400 Sobic010G236400 Sobic010G116600--Sobic010G236400 Sobic010G275500 Sobic010G275500 Sobic010G116600--Sobic010G275500 Sobic010G116600--Sobic003G408600 Sobic010G053800 Sobic010G053800 Sobic010G116600--Sobic010G053800 Sobic003G059750 Sobic003G059750 Sobic005G118600--Sobic003G059750 Sobic008G084700 Sobic008G084700 Sobic005G118600--Sobic008G084700 Sobic003G225700 Sobic003G225700 Sobic005G118600--Sobic003G225700 Sobic005G118600--Sobic001G065000 Sobic009G166300 Sobic009G166300 Sobic005G118600--Sobic009G166300 Sobic005G118600--Sobic008G153000 Sobic001G114000 Sobic001G114000 Sobic005G118600--Sobic001G114000 Sobic005G118600--Sobic002G071500 Sobic007G103600 Sobic007G103600 Sobic005G118600--Sobic007G103600 Sobic003G372700 Sobic003G372700 Sobic003G119000--Sobic003G372700 Sobic003G119000--Sobic002G071500 Sobic003G280800 Sobic003G280800 Sobic003G119000--Sobic003G280800 Sobic007G065400 Sobic007G065400 Sobic003G119000--Sobic007G065400 Sobic007G167500 Sobic007G167500 Sobic003G119000--Sobic007G167500 Sobic007G126600 Sobic007G126600 Sobic003G119000--Sobic007G126600 Sobic001G511500 Sobic001G511500 Sobic003G119000--Sobic001G511500 Sobic002G309600 Sobic002G309600 Sobic003G119000--Sobic002G309600 Sobic001G241200 Sobic001G241200 Sobic003G119000--Sobic001G241200
Octagon: transcription factors


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