Gene annotation
Transcriptome id Sobic.004G020700.1
Synonym sb-RS34, ATRSP41, Sb04g001910, serine/arginine-rich (SR) family
Functional annotation Putative splicing factor (PubMedID : 24356560)
RNA recognition motif containing protein, expressed
UniProt D8L7Z9 , C5XT29
Pfam PF00076
Panther DB PTHR24012
NCBI CDD KOG0106; Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)
KEGG Orthology K12893; splicing factor, arginine/serine-rich 4/5/6
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G25500 : arginine/serine-rich splicing factor 35
RAP-DB (Rice) LOC_Os02g03040.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a034939 , Zm00025a018777
Brachypodium KQJ93014
Barley HORVU6Hr1G011910.29 , HORVU6Hr1G011910.28 , HORVU6Hr1G011910.30 , HORVU6Hr1G011910.31 , HORVU6Hr1G011910.32 , HORVU6Hr1G011910.33
Wheat TraesCS6A02G065400 , TraesCSU02G119700 , TraesCSU02G119700 , TraesCSU02G119700 , TraesCS6B02G088500 , TraesCS6B02G088500 , TraesCS6B02G088500
Populus -


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cDNA sequences
Sobic.004G020700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G278300 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
2 Sobic.004G105500 expressed protein -
3 Sobic.002G127100 RNA-binding protein Luc7-like, putative, expressed -
4 Sobic.001G263200 hydrolase, alpha/beta fold family domain containing protein, expressed -
5 Sobic.001G088100 transcriptional adaptor, putative, expressed K11314: TADA2A, transcriptional adapter 2-alpha
6 Sobic.001G025000 FACT complex subunit SPT16, putative, expressed -
7 Sobic.005G000800 FGFR1 oncogene partner, putative, expressed K16546: FGFR1 oncogene partner
8 Sobic.003G412300 expressed protein -
9 Sobic.003G115100 importin subunit alpha, putative, expressed -
10 Sobic.001G040500 RING finger protein 126, putative, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
11 Sobic.003G038500 SSRP1-like FACT complex subunit, putative, expressed K09272: structure-specific recognition protein 1
12 Sobic.002G224700 NFKB, putative, expressed -
13 Sobic.001G376800 - K13116: DDX41, ATP-dependent RNA helicase DDX41
14 Sobic.001G509500 glutamyl-tRNA synthetase, cytoplasmic, putative, expressed K01885: EARS, glutamyl-tRNA synthetase
15 Sobic.005G216300 RNA recognition motif containing protein, expressed K12837: splicing factor U2AF 65 kDa subunit
16 Sobic.007G009700 nucleic acid binding protein, putative, expressed K12839: SMNDC1, survival of motor neuron-related-splicing factor 30
17 Sobic.003G153700 expressed protein -
18 Sobic.007G009400 bromodomain domain containing protein, expressed -
19 Sobic.005G196900 potyvirus VPg interacting protein, putative, expressed -
20 Sobic.008G112800 pre-mRNA-processing factor 6, putative, expressed K12855: PRPF6, pre-mRNA-processing factor 6


Gene co-expression network
sample Sobic004G020700 Sobic004G020700 Sobic003G278300 Sobic003G278300 Sobic004G020700--Sobic003G278300 Sobic004G105500 Sobic004G105500 Sobic004G020700--Sobic004G105500 Sobic002G127100 Sobic002G127100 Sobic004G020700--Sobic002G127100 Sobic001G263200 Sobic001G263200 Sobic004G020700--Sobic001G263200 Sobic001G088100 Sobic001G088100 Sobic004G020700--Sobic001G088100 Sobic001G025000 Sobic001G025000 Sobic004G020700--Sobic001G025000 Sobic005G000800 Sobic005G000800 Sobic004G020700--Sobic005G000800 Sobic003G412300 Sobic003G412300 Sobic004G020700--Sobic003G412300 Sobic003G115100 Sobic003G115100 Sobic004G020700--Sobic003G115100 Sobic002G224700 Sobic002G224700 Sobic003G278300--Sobic002G224700 Sobic007G086500 Sobic007G086500 Sobic003G278300--Sobic007G086500 Sobic003G278300--Sobic004G020700 Sobic004G212700 Sobic004G212700 Sobic003G278300--Sobic004G212700 Sobic006G179800 Sobic006G179800 Sobic003G278300--Sobic006G179800 Sobic001G459100 Sobic001G459100 Sobic003G278300--Sobic001G459100 Sobic009G155250 Sobic009G155250 Sobic003G278300--Sobic009G155250 Sobic001G010600 Sobic001G010600 Sobic003G278300--Sobic001G010600 Sobic006G044000 Sobic006G044000 Sobic003G278300--Sobic006G044000 Sobic009G126300 Sobic009G126300 Sobic004G105500--Sobic009G126300 Sobic004G105500--Sobic001G088100 Sobic009G182600 Sobic009G182600 Sobic004G105500--Sobic009G182600 Sobic001G008200 Sobic001G008200 Sobic004G105500--Sobic001G008200 Sobic009G020500 Sobic009G020500 Sobic004G105500--Sobic009G020500 Sobic003G074200 Sobic003G074200 Sobic004G105500--Sobic003G074200 Sobic003G293200 Sobic003G293200 Sobic004G105500--Sobic003G293200 Sobic002G286200 Sobic002G286200 Sobic004G105500--Sobic002G286200 Sobic001G138400 Sobic001G138400 Sobic004G105500--Sobic001G138400 Sobic001G347300 Sobic001G347300 Sobic002G127100--Sobic001G347300 Sobic006G251900 Sobic006G251900 Sobic002G127100--Sobic006G251900 Sobic007G126600 Sobic007G126600 Sobic002G127100--Sobic007G126600 Sobic003G108700 Sobic003G108700 Sobic002G127100--Sobic003G108700 Sobic008G113100 Sobic008G113100 Sobic002G127100--Sobic008G113100 Sobic007G146900 Sobic007G146900 Sobic002G127100--Sobic007G146900 Sobic004G257400 Sobic004G257400 Sobic002G127100--Sobic004G257400 Sobic005G021500 Sobic005G021500 Sobic002G127100--Sobic005G021500 Sobic002G127100--Sobic001G088100 Sobic001G263200--Sobic003G412300 Sobic001G509500 Sobic001G509500 Sobic001G263200--Sobic001G509500 Sobic005G216300 Sobic005G216300 Sobic001G263200--Sobic005G216300 Sobic001G142100 Sobic001G142100 Sobic001G263200--Sobic001G142100 Sobic009G151200 Sobic009G151200 Sobic001G263200--Sobic009G151200 Sobic007G119200 Sobic007G119200 Sobic001G263200--Sobic007G119200 Sobic003G289400 Sobic003G289400 Sobic001G263200--Sobic003G289400 Sobic010G065300 Sobic010G065300 Sobic001G263200--Sobic010G065300 Sobic007G027700 Sobic007G027700 Sobic001G263200--Sobic007G027700 Sobic009G005500 Sobic009G005500 Sobic001G088100--Sobic009G005500 Sobic001G088100--Sobic007G119200 Sobic010G069100 Sobic010G069100 Sobic001G088100--Sobic010G069100 Sobic010G236400 Sobic010G236400 Sobic001G088100--Sobic010G236400 Sobic003G394300 Sobic003G394300 Sobic001G088100--Sobic003G394300 Sobic007G105100 Sobic007G105100 Sobic001G088100--Sobic007G105100 Sobic001G241200 Sobic001G241200 Sobic001G088100--Sobic001G241200 Sobic004G274200 Sobic004G274200 Sobic001G088100--Sobic004G274200 Sobic003G408600 Sobic003G408600 Sobic001G088100--Sobic003G408600 Sobic003G360400 Sobic003G360400 Sobic001G025000--Sobic003G360400 Sobic009G044800 Sobic009G044800 Sobic001G025000--Sobic009G044800 Sobic003G389200 Sobic003G389200 Sobic001G025000--Sobic003G389200 Sobic001G025000--Sobic003G408600 Sobic001G354600 Sobic001G354600 Sobic001G025000--Sobic001G354600 Sobic010G112100 Sobic010G112100 Sobic001G025000--Sobic010G112100 Sobic002G045600 Sobic002G045600 Sobic001G025000--Sobic002G045600 Sobic001G025000--Sobic007G105100 Sobic001G063700 Sobic001G063700 Sobic001G025000--Sobic001G063700 Sobic010G211300 Sobic010G211300 Sobic005G000800--Sobic010G211300 Sobic004G013600 Sobic004G013600 Sobic005G000800--Sobic004G013600 Sobic006G110300 Sobic006G110300 Sobic005G000800--Sobic006G110300 Sobic004G305600 Sobic004G305600 Sobic005G000800--Sobic004G305600 Sobic008G001100 Sobic008G001100 Sobic005G000800--Sobic008G001100 Sobic004G350100 Sobic004G350100 Sobic005G000800--Sobic004G350100 Sobic002G272600 Sobic002G272600 Sobic005G000800--Sobic002G272600 Sobic001G028400 Sobic001G028400 Sobic005G000800--Sobic001G028400 Sobic010G033400 Sobic010G033400 Sobic005G000800--Sobic010G033400 Sobic003G412300--Sobic007G027700 Sobic003G401100 Sobic003G401100 Sobic003G412300--Sobic003G401100 Sobic004G156500 Sobic004G156500 Sobic003G412300--Sobic004G156500 Sobic003G412300--Sobic001G138400 Sobic006G252700 Sobic006G252700 Sobic003G412300--Sobic006G252700 Sobic002G058300 Sobic002G058300 Sobic003G412300--Sobic002G058300 Sobic007G054400 Sobic007G054400 Sobic003G412300--Sobic007G054400 Sobic002G259800 Sobic002G259800 Sobic003G412300--Sobic002G259800 Sobic002G357100 Sobic002G357100 Sobic003G412300--Sobic002G357100 Sobic001G226000 Sobic001G226000 Sobic003G115100--Sobic001G226000 Sobic003G115100--Sobic009G151200 Sobic003G115100--Sobic001G010600 Sobic009G030300 Sobic009G030300 Sobic003G115100--Sobic009G030300 Sobic007G195400 Sobic007G195400 Sobic003G115100--Sobic007G195400 Sobic003G115100--Sobic004G013600 Sobic003G115100--Sobic005G216300 Sobic003G115100--Sobic002G058300 Sobic004G011000 Sobic004G011000 Sobic003G115100--Sobic004G011000
Octagon: transcription factors


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