Gene annotation
Transcriptome id Sobic.005G196900.3
Synonym Sb05g025390, OBE2
Functional annotation potyvirus VPg interacting protein, putative, expressed
UniProt C5Y6Y5
Pfam PF07227 PF16312
Panther DB PTHR21736 PTHR21736:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G48160 : Protein of unknown function (DUF1423)
RAP-DB (Rice) LOC_Os12g32980.1 : potyvirus VPg interacting protein, putative, expressed
MaizeGDB (Corn) Zm00025a015894 , Zm00025a020957
Brachypodium KQJ87606
Barley -
Wheat TraesCS4D02G150100 , TraesCS4A02G167200 , TraesCS4B02G125100
Populus -


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cDNA sequences
Sobic.005G196900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G180000 protein kinase domain containing protein, expressed -
2 Sobic.003G298100 one zinc finger protein, putative, expressed -
3 Sobic.009G198100 expressed protein -
4 Sobic.001G131800 expressed protein K15186: ELL-associated factor
5 Sobic.007G117100 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
6 Sobic.002G224700 NFKB, putative, expressed -
7 Sobic.007G086500 expressed protein K16584: HAUS augmin-like complex subunit 1
8 Sobic.002G058300 ES43 protein, putative, expressed -
9 Sobic.004G305600 SKIP/SNW domain containing protein, expressed K06063: SNW1, SKIIP, SNW domain-containing protein 1
10 Sobic.002G034600 zinc ion binding protein, putative, expressed -
11 Sobic.004G246700 zinc finger family protein, putative, expressed -
12 Sobic.002G126500 RNA recognition motif containing protein, expressed -
13 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
14 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
15 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
16 Sobic.009G232700 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
17 Sobic.002G272800 mediator of RNA polymerase II transcription subunit 10, putative, expressed K15151: MED10, mediator of RNA polymerase II transcription subunit 10
18 Sobic.003G355000 Transcription initiation factor TFIID subunit A containing protein, expressed K03126: transcription initiation factor TFIID subunit 12
19 Sobic.010G171100 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
20 Sobic.004G186000 salt tolerant protein, putative, expressed -


Gene co-expression network
sample Sobic005G196900 Sobic005G196900 Sobic002G180000 Sobic002G180000 Sobic005G196900--Sobic002G180000 Sobic003G298100 Sobic003G298100 Sobic005G196900--Sobic003G298100 Sobic009G198100 Sobic009G198100 Sobic005G196900--Sobic009G198100 Sobic001G131800 Sobic001G131800 Sobic005G196900--Sobic001G131800 Sobic007G117100 Sobic007G117100 Sobic005G196900--Sobic007G117100 Sobic002G224700 Sobic002G224700 Sobic005G196900--Sobic002G224700 Sobic007G086500 Sobic007G086500 Sobic005G196900--Sobic007G086500 Sobic002G058300 Sobic002G058300 Sobic005G196900--Sobic002G058300 Sobic004G305600 Sobic004G305600 Sobic005G196900--Sobic004G305600 Sobic007G111100 Sobic007G111100 Sobic002G180000--Sobic007G111100 Sobic001G143500 Sobic001G143500 Sobic002G180000--Sobic001G143500 Sobic008G139700 Sobic008G139700 Sobic002G180000--Sobic008G139700 Sobic006G065800 Sobic006G065800 Sobic002G180000--Sobic006G065800 Sobic006G267300 Sobic006G267300 Sobic002G180000--Sobic006G267300 Sobic002G180000--Sobic001G131800 Sobic002G272600 Sobic002G272600 Sobic002G180000--Sobic002G272600 Sobic001G080000 Sobic001G080000 Sobic002G180000--Sobic001G080000 Sobic003G405700 Sobic003G405700 Sobic002G180000--Sobic003G405700 Sobic002G248400 Sobic002G248400 Sobic003G298100--Sobic002G248400 Sobic002G157000 Sobic002G157000 Sobic003G298100--Sobic002G157000 Sobic004G205600 Sobic004G205600 Sobic003G298100--Sobic004G205600 Sobic001G107500 Sobic001G107500 Sobic003G298100--Sobic001G107500 Sobic002G320500 Sobic002G320500 Sobic003G298100--Sobic002G320500 Sobic003G108700 Sobic003G108700 Sobic003G298100--Sobic003G108700 Sobic007G104800 Sobic007G104800 Sobic003G298100--Sobic007G104800 Sobic001G497300 Sobic001G497300 Sobic003G298100--Sobic001G497300 Sobic002G399100 Sobic002G399100 Sobic003G298100--Sobic002G399100 Sobic007G118200 Sobic007G118200 Sobic009G198100--Sobic007G118200 Sobic002G034600 Sobic002G034600 Sobic009G198100--Sobic002G034600 Sobic010G033400 Sobic010G033400 Sobic009G198100--Sobic010G033400 Sobic003G355000 Sobic003G355000 Sobic009G198100--Sobic003G355000 Sobic003G081000 Sobic003G081000 Sobic009G198100--Sobic003G081000 Sobic008G174300 Sobic008G174300 Sobic009G198100--Sobic008G174300 Sobic009G198100--Sobic001G131800 Sobic003G359300 Sobic003G359300 Sobic009G198100--Sobic003G359300 Sobic007G205000 Sobic007G205000 Sobic009G198100--Sobic007G205000 Sobic001G131800--Sobic008G174300 Sobic001G131800--Sobic003G081000 Sobic010G202600 Sobic010G202600 Sobic001G131800--Sobic010G202600 Sobic001G131800--Sobic010G033400 Sobic001G131800--Sobic009G198100 Sobic007G132400 Sobic007G132400 Sobic001G131800--Sobic007G132400 Sobic001G131800--Sobic001G107500 Sobic001G131800--Sobic007G111100 Sobic001G131800--Sobic003G359300 Sobic001G038100 Sobic001G038100 Sobic007G117100--Sobic001G038100 Sobic003G433500 Sobic003G433500 Sobic007G117100--Sobic003G433500 Sobic003G132700 Sobic003G132700 Sobic007G117100--Sobic003G132700 Sobic006G120800 Sobic006G120800 Sobic007G117100--Sobic006G120800 Sobic001G507400 Sobic001G507400 Sobic007G117100--Sobic001G507400 Sobic001G309100 Sobic001G309100 Sobic007G117100--Sobic001G309100 Sobic003G354100 Sobic003G354100 Sobic007G117100--Sobic003G354100 Sobic002G014700 Sobic002G014700 Sobic007G117100--Sobic002G014700 Sobic002G089900 Sobic002G089900 Sobic007G117100--Sobic002G089900 Sobic006G248500 Sobic006G248500 Sobic002G224700--Sobic006G248500 Sobic008G127400 Sobic008G127400 Sobic002G224700--Sobic008G127400 Sobic007G027700 Sobic007G027700 Sobic002G224700--Sobic007G027700 Sobic001G029400 Sobic001G029400 Sobic002G224700--Sobic001G029400 Sobic004G246700 Sobic004G246700 Sobic002G224700--Sobic004G246700 Sobic002G224700--Sobic007G111100 Sobic002G224700--Sobic002G058300 Sobic002G224700--Sobic001G143500 Sobic002G224700--Sobic006G065800 Sobic007G086500--Sobic002G058300 Sobic001G010600 Sobic001G010600 Sobic007G086500--Sobic001G010600 Sobic001G375700 Sobic001G375700 Sobic007G086500--Sobic001G375700 Sobic007G086500--Sobic007G132400 Sobic007G086500--Sobic001G131800 Sobic010G028300 Sobic010G028300 Sobic007G086500--Sobic010G028300 Sobic009G140700 Sobic009G140700 Sobic007G086500--Sobic009G140700 Sobic007G086500--Sobic001G143500 Sobic001G281600 Sobic001G281600 Sobic007G086500--Sobic001G281600 Sobic002G058300--Sobic003G359300 Sobic002G058300--Sobic007G086500 Sobic002G186000 Sobic002G186000 Sobic002G058300--Sobic002G186000 Sobic002G058300--Sobic001G010600 Sobic003G197800 Sobic003G197800 Sobic002G058300--Sobic003G197800 Sobic002G058300--Sobic009G198100 Sobic002G058300--Sobic010G033400 Sobic002G058300--Sobic006G267300 Sobic002G058300--Sobic007G205000 Sobic004G059000 Sobic004G059000 Sobic004G305600--Sobic004G059000 Sobic004G305600--Sobic003G405700 Sobic003G250500 Sobic003G250500 Sobic004G305600--Sobic003G250500 Sobic002G256300 Sobic002G256300 Sobic004G305600--Sobic002G256300 Sobic003G127400 Sobic003G127400 Sobic004G305600--Sobic003G127400 Sobic005G000800 Sobic005G000800 Sobic004G305600--Sobic005G000800 Sobic009G246950 Sobic009G246950 Sobic004G305600--Sobic009G246950 Sobic001G512900 Sobic001G512900 Sobic004G305600--Sobic001G512900 Sobic004G253000 Sobic004G253000 Sobic004G305600--Sobic004G253000
Octagon: transcription factors


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