Gene annotation
Transcriptome id Sobic.003G278300.2
Synonym SbTri22, Sb03g033020
Functional annotation Trihelix Family (PubMedID : 24864043)
transcription factor like protein, putative, expressed
UniProt A0A1W0VZ68
Pfam PF13837
Panther DB PTHR31307 PTHR31307:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G24490 : Alcohol dehydrogenase transcription factor Myb/SANT-like family protein
RAP-DB (Rice) LOC_Os01g52090.1 : transcription factor like protein, putative, expressed
MaizeGDB (Corn) Zm00025a038978
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.003G278300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G224700 NFKB, putative, expressed -
2 Sobic.007G086500 expressed protein K16584: HAUS augmin-like complex subunit 1
3 Sobic.004G020700 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12893: splicing factor, arginine/serine-rich 4/5/6
4 Sobic.004G212700 RNA recognition motif containing protein, putative, expressed K12883: NCBP2, nuclear cap-binding protein subunit 2
5 Sobic.006G179800 HMG1/2, putative, expressed -
6 Sobic.001G459100 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
7 Sobic.009G155250 - -
8 Sobic.001G010600 U2 small nuclear ribonucleoprotein A, putative, expressed K11092: U2 small nuclear ribonucleoprotein A'
9 Sobic.006G044000 - -
10 Sobic.001G029400 RNA-binding motif protein, putative, expressed K13107: RBMX2, RNA-binding motif protein, X-linked 2
11 Sobic.003G340900 SAG20, putative, expressed -
12 Sobic.002G143900 OsFBL19 - F-box domain and LRR containing protein, expressed K10273: F-box and leucine-rich repeat protein 7
13 Sobic.007G027700 expressed protein -
14 Sobic.003G412300 expressed protein -
15 Sobic.001G507400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
16 Sobic.005G000800 FGFR1 oncogene partner, putative, expressed K16546: FGFR1 oncogene partner
17 Sobic.010G028300 bromodomain domain containing protein, expressed -
18 Sobic.002G280600 hydroxyproline-rich glycoprotein family protein, putative, expressed -
19 Sobic.004G225300 e2f-associated phosphoprotein, putative, expressed -
20 Sobic.002G394800 SWIB/MDM2 domain containing protein, expressed K11650: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D


Gene co-expression network
sample Sobic003G278300 Sobic003G278300 Sobic002G224700 Sobic002G224700 Sobic003G278300--Sobic002G224700 Sobic007G086500 Sobic007G086500 Sobic003G278300--Sobic007G086500 Sobic004G020700 Sobic004G020700 Sobic003G278300--Sobic004G020700 Sobic004G212700 Sobic004G212700 Sobic003G278300--Sobic004G212700 Sobic006G179800 Sobic006G179800 Sobic003G278300--Sobic006G179800 Sobic001G459100 Sobic001G459100 Sobic003G278300--Sobic001G459100 Sobic009G155250 Sobic009G155250 Sobic003G278300--Sobic009G155250 Sobic001G010600 Sobic001G010600 Sobic003G278300--Sobic001G010600 Sobic006G044000 Sobic006G044000 Sobic003G278300--Sobic006G044000 Sobic006G248500 Sobic006G248500 Sobic002G224700--Sobic006G248500 Sobic008G127400 Sobic008G127400 Sobic002G224700--Sobic008G127400 Sobic007G027700 Sobic007G027700 Sobic002G224700--Sobic007G027700 Sobic001G029400 Sobic001G029400 Sobic002G224700--Sobic001G029400 Sobic004G246700 Sobic004G246700 Sobic002G224700--Sobic004G246700 Sobic007G111100 Sobic007G111100 Sobic002G224700--Sobic007G111100 Sobic002G058300 Sobic002G058300 Sobic002G224700--Sobic002G058300 Sobic001G143500 Sobic001G143500 Sobic002G224700--Sobic001G143500 Sobic006G065800 Sobic006G065800 Sobic002G224700--Sobic006G065800 Sobic007G086500--Sobic002G058300 Sobic007G086500--Sobic001G010600 Sobic001G375700 Sobic001G375700 Sobic007G086500--Sobic001G375700 Sobic007G132400 Sobic007G132400 Sobic007G086500--Sobic007G132400 Sobic001G131800 Sobic001G131800 Sobic007G086500--Sobic001G131800 Sobic010G028300 Sobic010G028300 Sobic007G086500--Sobic010G028300 Sobic009G140700 Sobic009G140700 Sobic007G086500--Sobic009G140700 Sobic007G086500--Sobic001G143500 Sobic001G281600 Sobic001G281600 Sobic007G086500--Sobic001G281600 Sobic004G020700--Sobic003G278300 Sobic004G105500 Sobic004G105500 Sobic004G020700--Sobic004G105500 Sobic002G127100 Sobic002G127100 Sobic004G020700--Sobic002G127100 Sobic001G263200 Sobic001G263200 Sobic004G020700--Sobic001G263200 Sobic001G088100 Sobic001G088100 Sobic004G020700--Sobic001G088100 Sobic001G025000 Sobic001G025000 Sobic004G020700--Sobic001G025000 Sobic005G000800 Sobic005G000800 Sobic004G020700--Sobic005G000800 Sobic003G412300 Sobic003G412300 Sobic004G020700--Sobic003G412300 Sobic003G115100 Sobic003G115100 Sobic004G020700--Sobic003G115100 Sobic004G129600 Sobic004G129600 Sobic004G212700--Sobic004G129600 Sobic004G206300 Sobic004G206300 Sobic004G212700--Sobic004G206300 Sobic004G019600 Sobic004G019600 Sobic004G212700--Sobic004G019600 Sobic006G245700 Sobic006G245700 Sobic004G212700--Sobic006G245700 Sobic001G346300 Sobic001G346300 Sobic004G212700--Sobic001G346300 Sobic003G274400 Sobic003G274400 Sobic004G212700--Sobic003G274400 Sobic010G154000 Sobic010G154000 Sobic004G212700--Sobic010G154000 Sobic002G394800 Sobic002G394800 Sobic004G212700--Sobic002G394800 Sobic004G198900 Sobic004G198900 Sobic004G212700--Sobic004G198900 Sobic006G179800--Sobic004G212700 Sobic002G113900 Sobic002G113900 Sobic006G179800--Sobic002G113900 Sobic006G179800--Sobic001G459100 Sobic004G226800 Sobic004G226800 Sobic006G179800--Sobic004G226800 Sobic002G262000 Sobic002G262000 Sobic006G179800--Sobic002G262000 Sobic001G329300 Sobic001G329300 Sobic006G179800--Sobic001G329300 Sobic004G225300 Sobic004G225300 Sobic006G179800--Sobic004G225300 Sobic006G270900 Sobic006G270900 Sobic006G179800--Sobic006G270900 Sobic006G179800--Sobic003G278300 Sobic001G459100--Sobic004G226800 Sobic006G049700 Sobic006G049700 Sobic001G459100--Sobic006G049700 Sobic001G234200 Sobic001G234200 Sobic001G459100--Sobic001G234200 Sobic004G232800 Sobic004G232800 Sobic001G459100--Sobic004G232800 Sobic001G459100--Sobic002G113900 Sobic004G356900 Sobic004G356900 Sobic001G459100--Sobic004G356900 Sobic006G233000 Sobic006G233000 Sobic001G459100--Sobic006G233000 Sobic004G077600 Sobic004G077600 Sobic001G459100--Sobic004G077600 Sobic001G119900 Sobic001G119900 Sobic001G459100--Sobic001G119900 Sobic001G002600 Sobic001G002600 Sobic009G155250--Sobic001G002600 Sobic010G237900 Sobic010G237900 Sobic009G155250--Sobic010G237900 Sobic003G379200 Sobic003G379200 Sobic009G155250--Sobic003G379200 Sobic009G155250--Sobic001G119900 Sobic001G248100 Sobic001G248100 Sobic009G155250--Sobic001G248100 Sobic002G052700 Sobic002G052700 Sobic009G155250--Sobic002G052700 Sobic004G004900 Sobic004G004900 Sobic009G155250--Sobic004G004900 Sobic002G425500 Sobic002G425500 Sobic009G155250--Sobic002G425500 Sobic008G051200 Sobic008G051200 Sobic009G155250--Sobic008G051200 Sobic001G010600--Sobic002G058300 Sobic007G205000 Sobic007G205000 Sobic001G010600--Sobic007G205000 Sobic001G010600--Sobic007G086500 Sobic001G226000 Sobic001G226000 Sobic001G010600--Sobic001G226000 Sobic001G010600--Sobic003G115100 Sobic001G010600--Sobic009G140700 Sobic004G013600 Sobic004G013600 Sobic001G010600--Sobic004G013600 Sobic001G010600--Sobic010G028300 Sobic008G139700 Sobic008G139700 Sobic001G010600--Sobic008G139700 Sobic006G044000--Sobic007G027700 Sobic002G143900 Sobic002G143900 Sobic006G044000--Sobic002G143900 Sobic007G112000 Sobic007G112000 Sobic006G044000--Sobic007G112000 Sobic001G267900 Sobic001G267900 Sobic006G044000--Sobic001G267900 Sobic001G518400 Sobic001G518400 Sobic006G044000--Sobic001G518400 Sobic010G209400 Sobic010G209400 Sobic006G044000--Sobic010G209400 Sobic006G032900 Sobic006G032900 Sobic006G044000--Sobic006G032900 Sobic001G078100 Sobic001G078100 Sobic006G044000--Sobic001G078100 Sobic005G216300 Sobic005G216300 Sobic006G044000--Sobic005G216300
Octagon: transcription factors


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