Gene annotation
Transcriptome id Sobic.006G179800.2,Sobic.006G179800.1
Synonym Sb06g025440, NFD03, NFD3, HMGB3
Functional annotation HMG1/2, putative, expressed
UniProt A0A1B6PMM8 , A0A1B6PMM0
Pfam PF00505
Panther DB PTHR13711 PTHR13711:SF193
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G20696 : high mobility group B3
RAP-DB (Rice) LOC_Os04g47690.2 : HMG1/2, putative, expressed
MaizeGDB (Corn) Zm00025a010199
Brachypodium KQJ84066
Barley HORVU2Hr1G095890.1 , HORVU2Hr1G095890.3 , HORVU2Hr1G095890.2
Wheat TraesCS2A02G404100 , TraesCS2D02G401100 , TraesCS2D02G401100 , TraesCS2B02G422000
Populus -


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cDNA sequences
Sobic.006G179800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G212700 RNA recognition motif containing protein, putative, expressed K12883: NCBP2, nuclear cap-binding protein subunit 2
2 Sobic.002G113900 lipid binding protein, putative, expressed -
3 Sobic.001G459100 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
4 Sobic.004G226800 expressed protein -
5 Sobic.002G262000 ankyrin repeat domain containing protein, putative, expressed -
6 Sobic.001G329300 expressed protein -
7 Sobic.004G225300 e2f-associated phosphoprotein, putative, expressed -
8 Sobic.006G270900 acyl-CoA-binding domain-containing protein 6, putative, expressed -
9 Sobic.003G278300 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
10 Sobic.003G153700 expressed protein -
11 Sobic.004G232800 expressed protein -
12 Sobic.004G316900 autophagy-related protein 12, putative, expressed K08336: ubiquitin-like protein ATG12
13 Sobic.004G019600 histone deacetylase complex subunit SAP18, putative, expressed K14324: histone deacetylase complex subunit SAP18
14 Sobic.004G305600 SKIP/SNW domain containing protein, expressed K06063: SNW1, SKIIP, SNW domain-containing protein 1
15 Sobic.010G079850 - -
16 Sobic.006G049700 SAM domain family protein, expressed -
17 Sobic.007G086500 expressed protein K16584: HAUS augmin-like complex subunit 1
18 Sobic.008G001100 tonneau 1b, putative, expressed K16546: FGFR1 oncogene partner
19 Sobic.002G268400 expressed protein -
20 Sobic.001G428100 S-RNase-binding protein, putative, expressed K19042: E3 ubiquitin-protein ligase BOI and related proteins


Gene co-expression network
sample Sobic006G179800 Sobic006G179800 Sobic004G212700 Sobic004G212700 Sobic006G179800--Sobic004G212700 Sobic002G113900 Sobic002G113900 Sobic006G179800--Sobic002G113900 Sobic001G459100 Sobic001G459100 Sobic006G179800--Sobic001G459100 Sobic004G226800 Sobic004G226800 Sobic006G179800--Sobic004G226800 Sobic002G262000 Sobic002G262000 Sobic006G179800--Sobic002G262000 Sobic001G329300 Sobic001G329300 Sobic006G179800--Sobic001G329300 Sobic004G225300 Sobic004G225300 Sobic006G179800--Sobic004G225300 Sobic006G270900 Sobic006G270900 Sobic006G179800--Sobic006G270900 Sobic003G278300 Sobic003G278300 Sobic006G179800--Sobic003G278300 Sobic004G129600 Sobic004G129600 Sobic004G212700--Sobic004G129600 Sobic004G206300 Sobic004G206300 Sobic004G212700--Sobic004G206300 Sobic004G019600 Sobic004G019600 Sobic004G212700--Sobic004G019600 Sobic006G245700 Sobic006G245700 Sobic004G212700--Sobic006G245700 Sobic001G346300 Sobic001G346300 Sobic004G212700--Sobic001G346300 Sobic003G274400 Sobic003G274400 Sobic004G212700--Sobic003G274400 Sobic010G154000 Sobic010G154000 Sobic004G212700--Sobic010G154000 Sobic002G394800 Sobic002G394800 Sobic004G212700--Sobic002G394800 Sobic004G198900 Sobic004G198900 Sobic004G212700--Sobic004G198900 Sobic002G113900--Sobic006G270900 Sobic009G004600 Sobic009G004600 Sobic002G113900--Sobic009G004600 Sobic002G113900--Sobic004G226800 Sobic006G049700 Sobic006G049700 Sobic002G113900--Sobic006G049700 Sobic004G356900 Sobic004G356900 Sobic002G113900--Sobic004G356900 Sobic004G301900 Sobic004G301900 Sobic002G113900--Sobic004G301900 Sobic007G019800 Sobic007G019800 Sobic002G113900--Sobic007G019800 Sobic004G104900 Sobic004G104900 Sobic002G113900--Sobic004G104900 Sobic002G268400 Sobic002G268400 Sobic002G113900--Sobic002G268400 Sobic001G459100--Sobic004G226800 Sobic001G459100--Sobic006G049700 Sobic001G234200 Sobic001G234200 Sobic001G459100--Sobic001G234200 Sobic004G232800 Sobic004G232800 Sobic001G459100--Sobic004G232800 Sobic001G459100--Sobic002G113900 Sobic001G459100--Sobic004G356900 Sobic006G233000 Sobic006G233000 Sobic001G459100--Sobic006G233000 Sobic004G077600 Sobic004G077600 Sobic001G459100--Sobic004G077600 Sobic001G119900 Sobic001G119900 Sobic001G459100--Sobic001G119900 Sobic004G226800--Sobic004G356900 Sobic004G226800--Sobic006G049700 Sobic002G256300 Sobic002G256300 Sobic004G226800--Sobic002G256300 Sobic004G226800--Sobic002G113900 Sobic010G193800 Sobic010G193800 Sobic004G226800--Sobic010G193800 Sobic003G226500 Sobic003G226500 Sobic004G226800--Sobic003G226500 Sobic004G226800--Sobic001G459100 Sobic002G204000 Sobic002G204000 Sobic004G226800--Sobic002G204000 Sobic004G226800--Sobic004G232800 Sobic002G262000--Sobic004G356900 Sobic002G071000 Sobic002G071000 Sobic002G262000--Sobic002G071000 Sobic003G117300 Sobic003G117300 Sobic002G262000--Sobic003G117300 Sobic010G108900 Sobic010G108900 Sobic002G262000--Sobic010G108900 Sobic002G262000--Sobic006G049700 Sobic002G262000--Sobic001G234200 Sobic006G183000 Sobic006G183000 Sobic002G262000--Sobic006G183000 Sobic002G262000--Sobic004G232800 Sobic004G348900 Sobic004G348900 Sobic002G262000--Sobic004G348900 Sobic001G329300--Sobic002G204000 Sobic006G011000 Sobic006G011000 Sobic001G329300--Sobic006G011000 Sobic007G226100 Sobic007G226100 Sobic001G329300--Sobic007G226100 Sobic006G252100 Sobic006G252100 Sobic001G329300--Sobic006G252100 Sobic001G329300--Sobic004G226800 Sobic006G094600 Sobic006G094600 Sobic001G329300--Sobic006G094600 Sobic004G316900 Sobic004G316900 Sobic001G329300--Sobic004G316900 Sobic001G350501 Sobic001G350501 Sobic001G329300--Sobic001G350501 Sobic001G329300--Sobic010G193800 Sobic004G027000 Sobic004G027000 Sobic004G225300--Sobic004G027000 Sobic001G422700 Sobic001G422700 Sobic004G225300--Sobic001G422700 Sobic004G225300--Sobic002G394800 Sobic004G225300--Sobic004G206300 Sobic009G056300 Sobic009G056300 Sobic004G225300--Sobic009G056300 Sobic004G225300--Sobic004G212700 Sobic002G139000 Sobic002G139000 Sobic004G225300--Sobic002G139000 Sobic004G225300--Sobic006G252100 Sobic004G225300--Sobic006G179800 Sobic006G270900--Sobic002G268400 Sobic006G270900--Sobic002G113900 Sobic001G281600 Sobic001G281600 Sobic006G270900--Sobic001G281600 Sobic006G270900--Sobic004G356900 Sobic010G279700 Sobic010G279700 Sobic006G270900--Sobic010G279700 Sobic003G405700 Sobic003G405700 Sobic006G270900--Sobic003G405700 Sobic010G057900 Sobic010G057900 Sobic006G270900--Sobic010G057900 Sobic006G270900--Sobic009G004600 Sobic001G143500 Sobic001G143500 Sobic006G270900--Sobic001G143500 Sobic002G224700 Sobic002G224700 Sobic003G278300--Sobic002G224700 Sobic007G086500 Sobic007G086500 Sobic003G278300--Sobic007G086500 Sobic004G020700 Sobic004G020700 Sobic003G278300--Sobic004G020700 Sobic003G278300--Sobic004G212700 Sobic003G278300--Sobic006G179800 Sobic003G278300--Sobic001G459100 Sobic009G155250 Sobic009G155250 Sobic003G278300--Sobic009G155250 Sobic001G010600 Sobic001G010600 Sobic003G278300--Sobic001G010600 Sobic006G044000 Sobic006G044000 Sobic003G278300--Sobic006G044000
Octagon: transcription factors


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