Gene annotation
Transcriptome id Sobic.004G212700.1
Synonym ATCBP20, CBP20, Sb04g025800
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5XXC1
Pfam PF00076
Panther DB PTHR18847 PTHR18847:SF0
NCBI CDD KOG0121; Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily)
KEGG Orthology K12883; NCBP2, nuclear cap-binding protein subunit 2
Gene Ontology GO:0003676; nucleic acid binding GO:0005846nuclear cap binding complex GO:0000339RNA cap binding


Orthologs (automatic annotation)
TAIR AT5G44200 : CAP-binding protein 20
RAP-DB (Rice) LOC_Os02g39890.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a021192 , Zm00025a031937
Brachypodium KQK00303
Barley HORVU6Hr1G056260.6 , HORVU6Hr1G056260.5 , HORVU6Hr1G056260.4 , HORVU6Hr1G056260.3 , HORVU6Hr1G056260.2 , HORVU6Hr1G056260.1
Wheat TraesCS6A02G232100 , TraesCS6B02G249500 , TraesCS6D02G203100
Populus -


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cDNA sequences
Sobic.004G212700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G129600 expressed protein -
2 Sobic.004G206300 pre-mRNA-splicing factor ISY1, putative, expressed K12870: pre-mRNA-splicing factor ISY1
3 Sobic.004G019600 histone deacetylase complex subunit SAP18, putative, expressed K14324: histone deacetylase complex subunit SAP18
4 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
5 Sobic.001G346300 WD domain, G-beta repeat domain containing protein, expressed K12816: CDC40, pre-mRNA-processing factor 17
6 Sobic.003G274400 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
7 Sobic.010G154000 zinc finger protein, putative, expressed K11979: E3 ubiquitin-protein ligase UBR7
8 Sobic.002G394800 SWIB/MDM2 domain containing protein, expressed K11650: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
9 Sobic.004G198900 expressed protein -
10 Sobic.006G011000 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12893: splicing factor, arginine/serine-rich 4/5/6
11 Sobic.001G152000 elongation factor Tu family protein, putative, expressed K14536: ribosome assembly protein 1
12 Sobic.001G335500 RNA-binding protein-like, putative, expressed -
13 Sobic.006G179800 HMG1/2, putative, expressed -
14 Sobic.009G056300 PHD finger protein, putative, expressed -
15 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1
16 Sobic.001G507400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
17 Sobic.007G134100 expressed protein -
18 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
19 Sobic.004G067400 expressed protein -
20 Sobic.008G125000 AP-3 complex subunit delta, putative, expressed K12396: AP-3 complex subunit delta


Gene co-expression network
sample Sobic004G212700 Sobic004G212700 Sobic004G129600 Sobic004G129600 Sobic004G212700--Sobic004G129600 Sobic004G206300 Sobic004G206300 Sobic004G212700--Sobic004G206300 Sobic004G019600 Sobic004G019600 Sobic004G212700--Sobic004G019600 Sobic006G245700 Sobic006G245700 Sobic004G212700--Sobic006G245700 Sobic001G346300 Sobic001G346300 Sobic004G212700--Sobic001G346300 Sobic003G274400 Sobic003G274400 Sobic004G212700--Sobic003G274400 Sobic010G154000 Sobic010G154000 Sobic004G212700--Sobic010G154000 Sobic002G394800 Sobic002G394800 Sobic004G212700--Sobic002G394800 Sobic004G198900 Sobic004G198900 Sobic004G212700--Sobic004G198900 Sobic004G129600--Sobic004G212700 Sobic004G129600--Sobic004G206300 Sobic004G129600--Sobic003G274400 Sobic009G031500 Sobic009G031500 Sobic004G129600--Sobic009G031500 Sobic001G335500 Sobic001G335500 Sobic004G129600--Sobic001G335500 Sobic007G125700 Sobic007G125700 Sobic004G129600--Sobic007G125700 Sobic007G153700 Sobic007G153700 Sobic004G129600--Sobic007G153700 Sobic004G043750 Sobic004G043750 Sobic004G129600--Sobic004G043750 Sobic002G017900 Sobic002G017900 Sobic004G129600--Sobic002G017900 Sobic004G206300--Sobic004G212700 Sobic004G027000 Sobic004G027000 Sobic004G206300--Sobic004G027000 Sobic009G056300 Sobic009G056300 Sobic004G206300--Sobic009G056300 Sobic004G206300--Sobic004G129600 Sobic004G206300--Sobic009G031500 Sobic008G125000 Sobic008G125000 Sobic004G206300--Sobic008G125000 Sobic004G225300 Sobic004G225300 Sobic004G206300--Sobic004G225300 Sobic004G206300--Sobic001G335500 Sobic001G099800 Sobic001G099800 Sobic004G206300--Sobic001G099800 Sobic002G204000 Sobic002G204000 Sobic004G019600--Sobic002G204000 Sobic004G019600--Sobic001G346300 Sobic001G114500 Sobic001G114500 Sobic004G019600--Sobic001G114500 Sobic010G220900 Sobic010G220900 Sobic004G019600--Sobic010G220900 Sobic006G087100 Sobic006G087100 Sobic004G019600--Sobic006G087100 Sobic001G152000 Sobic001G152000 Sobic004G019600--Sobic001G152000 Sobic009G258400 Sobic009G258400 Sobic004G019600--Sobic009G258400 Sobic004G019600--Sobic004G212700 Sobic009G231900 Sobic009G231900 Sobic004G019600--Sobic009G231900 Sobic004G256300 Sobic004G256300 Sobic006G245700--Sobic004G256300 Sobic001G370300 Sobic001G370300 Sobic006G245700--Sobic001G370300 Sobic006G245700--Sobic008G125000 Sobic006G245700--Sobic003G274400 Sobic001G115500 Sobic001G115500 Sobic006G245700--Sobic001G115500 Sobic006G245700--Sobic002G394800 Sobic001G436300 Sobic001G436300 Sobic006G245700--Sobic001G436300 Sobic003G221500 Sobic003G221500 Sobic006G245700--Sobic003G221500 Sobic001G157600 Sobic001G157600 Sobic006G245700--Sobic001G157600 Sobic001G346300--Sobic004G019600 Sobic001G346300--Sobic006G087100 Sobic001G291800 Sobic001G291800 Sobic001G346300--Sobic001G291800 Sobic001G346300--Sobic009G258400 Sobic010G186600 Sobic010G186600 Sobic001G346300--Sobic010G186600 Sobic006G010000 Sobic006G010000 Sobic001G346300--Sobic006G010000 Sobic001G346300--Sobic001G152000 Sobic001G346300--Sobic004G212700 Sobic006G233300 Sobic006G233300 Sobic001G346300--Sobic006G233300 Sobic002G219900 Sobic002G219900 Sobic003G274400--Sobic002G219900 Sobic003G274400--Sobic006G245700 Sobic003G274400--Sobic001G436300 Sobic003G274400--Sobic007G125700 Sobic003G274400--Sobic009G031500 Sobic003G274400--Sobic004G129600 Sobic002G430900 Sobic002G430900 Sobic003G274400--Sobic002G430900 Sobic003G274400--Sobic002G017900 Sobic006G280100 Sobic006G280100 Sobic003G274400--Sobic006G280100 Sobic004G320100 Sobic004G320100 Sobic010G154000--Sobic004G320100 Sobic006G120800 Sobic006G120800 Sobic010G154000--Sobic006G120800 Sobic001G507400 Sobic001G507400 Sobic010G154000--Sobic001G507400 Sobic006G049100 Sobic006G049100 Sobic010G154000--Sobic006G049100 Sobic001G487100 Sobic001G487100 Sobic010G154000--Sobic001G487100 Sobic010G154000--Sobic006G245700 Sobic010G154000--Sobic003G221500 Sobic010G154000--Sobic009G258400 Sobic010G154000--Sobic004G212700 Sobic002G394800--Sobic006G233300 Sobic002G143900 Sobic002G143900 Sobic002G394800--Sobic002G143900 Sobic006G233000 Sobic006G233000 Sobic002G394800--Sobic006G233000 Sobic002G280600 Sobic002G280600 Sobic002G394800--Sobic002G280600 Sobic002G394800--Sobic006G245700 Sobic006G272200 Sobic006G272200 Sobic002G394800--Sobic006G272200 Sobic002G394800--Sobic001G370300 Sobic004G249300 Sobic004G249300 Sobic002G394800--Sobic004G249300 Sobic002G394800--Sobic002G430900 Sobic004G198900--Sobic002G017900 Sobic006G242500 Sobic006G242500 Sobic004G198900--Sobic006G242500 Sobic004G198900--Sobic004G212700 Sobic005G120700 Sobic005G120700 Sobic004G198900--Sobic005G120700 Sobic004G198900--Sobic006G233000 Sobic010G032400 Sobic010G032400 Sobic004G198900--Sobic010G032400 Sobic004G198900--Sobic003G274400 Sobic001G536000 Sobic001G536000 Sobic004G198900--Sobic001G536000 Sobic004G155600 Sobic004G155600 Sobic004G198900--Sobic004G155600
Octagon: transcription factors


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