Gene annotation
Transcriptome id Sobic.004G198900.1
Synonym LFR, Sb04g024550
Functional annotation expressed protein
UniProt C5XWG0
Pfam -
Panther DB PTHR12656
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G22990 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os07g41900.1 : expressed protein
MaizeGDB (Corn) Zm00025a031804
Brachypodium KQK00126 , KQK00127 , PNT68958 , PNT68957
Barley HORVU6Hr1G052890.1 , HORVU6Hr1G052890.3 , HORVU6Hr1G052890.4 , HORVU6Hr1G052890.5 , HORVU6Hr1G052890.2
Wheat TraesCS6B02G235800 , TraesCS6B02G235800 , TraesCS6D02G190800 , TraesCS6D02G190800 , TraesCS6A02G205500 , TraesCS6A02G205500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G017900 tetratricopeptide repeat containing protein, putative, expressed K11291: nuclear autoantigenic sperm protein
2 Sobic.006G242500 CDT1B - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
3 Sobic.004G212700 RNA recognition motif containing protein, putative, expressed K12883: NCBP2, nuclear cap-binding protein subunit 2
4 Sobic.005G120700 ThiF family domain containing protein, putative, expressed K10684: UBLE1A, ubiquitin-like 1-activating enzyme E1 A
5 Sobic.006G233000 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
6 Sobic.010G032400 mitotic checkpoint protein, putative, expressed K02180: cell cycle arrest protein BUB3
7 Sobic.003G274400 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
8 Sobic.001G536000 actin, putative, expressed K11340: ACTL6A, actin-like protein 6A
9 Sobic.004G155600 dnaJ domain containing protein, expressed -
10 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1
11 Sobic.006G010000 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
12 Sobic.002G394800 SWIB/MDM2 domain containing protein, expressed K11650: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
13 Sobic.006G067600 histone deacetylase, putative, expressed K06067: histone deacetylase 1/2
14 Sobic.002G252100 methyl-binding domain protein MBD, putative, expressed -
15 Sobic.004G129600 expressed protein -
16 Sobic.007G159200 PWWP domain containing protein, expressed -
17 Sobic.003G311500 double-stranded RNA binding motif containing protein, expressed -
18 Sobic.004G287100 tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
19 Sobic.002G384300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
20 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5


Gene co-expression network
sample Sobic004G198900 Sobic004G198900 Sobic002G017900 Sobic002G017900 Sobic004G198900--Sobic002G017900 Sobic006G242500 Sobic006G242500 Sobic004G198900--Sobic006G242500 Sobic004G212700 Sobic004G212700 Sobic004G198900--Sobic004G212700 Sobic005G120700 Sobic005G120700 Sobic004G198900--Sobic005G120700 Sobic006G233000 Sobic006G233000 Sobic004G198900--Sobic006G233000 Sobic010G032400 Sobic010G032400 Sobic004G198900--Sobic010G032400 Sobic003G274400 Sobic003G274400 Sobic004G198900--Sobic003G274400 Sobic001G536000 Sobic001G536000 Sobic004G198900--Sobic001G536000 Sobic004G155600 Sobic004G155600 Sobic004G198900--Sobic004G155600 Sobic002G430900 Sobic002G430900 Sobic002G017900--Sobic002G430900 Sobic002G017900--Sobic004G198900 Sobic002G017900--Sobic005G120700 Sobic007G125700 Sobic007G125700 Sobic002G017900--Sobic007G125700 Sobic002G017900--Sobic003G274400 Sobic009G006900 Sobic009G006900 Sobic002G017900--Sobic009G006900 Sobic002G177500 Sobic002G177500 Sobic002G017900--Sobic002G177500 Sobic002G339800 Sobic002G339800 Sobic002G017900--Sobic002G339800 Sobic004G207000 Sobic004G207000 Sobic002G017900--Sobic004G207000 Sobic001G143600 Sobic001G143600 Sobic006G242500--Sobic001G143600 Sobic001G210000 Sobic001G210000 Sobic006G242500--Sobic001G210000 Sobic006G242500--Sobic004G198900 Sobic006G242500--Sobic003G274400 Sobic009G045300 Sobic009G045300 Sobic006G242500--Sobic009G045300 Sobic002G318600 Sobic002G318600 Sobic006G242500--Sobic002G318600 Sobic004G307900 Sobic004G307900 Sobic006G242500--Sobic004G307900 Sobic006G188800 Sobic006G188800 Sobic006G242500--Sobic006G188800 Sobic001G397800 Sobic001G397800 Sobic006G242500--Sobic001G397800 Sobic004G129600 Sobic004G129600 Sobic004G212700--Sobic004G129600 Sobic004G206300 Sobic004G206300 Sobic004G212700--Sobic004G206300 Sobic004G019600 Sobic004G019600 Sobic004G212700--Sobic004G019600 Sobic006G245700 Sobic006G245700 Sobic004G212700--Sobic006G245700 Sobic001G346300 Sobic001G346300 Sobic004G212700--Sobic001G346300 Sobic004G212700--Sobic003G274400 Sobic010G154000 Sobic010G154000 Sobic004G212700--Sobic010G154000 Sobic002G394800 Sobic002G394800 Sobic004G212700--Sobic002G394800 Sobic004G212700--Sobic004G198900 Sobic010G269300 Sobic010G269300 Sobic005G120700--Sobic010G269300 Sobic005G120700--Sobic002G430900 Sobic004G287100 Sobic004G287100 Sobic005G120700--Sobic004G287100 Sobic005G120700--Sobic002G017900 Sobic004G256300 Sobic004G256300 Sobic005G120700--Sobic004G256300 Sobic003G222700 Sobic003G222700 Sobic005G120700--Sobic003G222700 Sobic003G360300 Sobic003G360300 Sobic005G120700--Sobic003G360300 Sobic005G120700--Sobic006G245700 Sobic002G252100 Sobic002G252100 Sobic005G120700--Sobic002G252100 Sobic006G010000 Sobic006G010000 Sobic006G233000--Sobic006G010000 Sobic010G085200 Sobic010G085200 Sobic006G233000--Sobic010G085200 Sobic006G233300 Sobic006G233300 Sobic006G233000--Sobic006G233300 Sobic006G233000--Sobic004G155600 Sobic001G259000 Sobic001G259000 Sobic006G233000--Sobic001G259000 Sobic006G233000--Sobic002G394800 Sobic003G439800 Sobic003G439800 Sobic006G233000--Sobic003G439800 Sobic006G270600 Sobic006G270600 Sobic006G233000--Sobic006G270600 Sobic007G134100 Sobic007G134100 Sobic006G233000--Sobic007G134100 Sobic006G121400 Sobic006G121400 Sobic010G032400--Sobic006G121400 Sobic010G032400--Sobic004G198900 Sobic006G221400 Sobic006G221400 Sobic010G032400--Sobic006G221400 Sobic003G113800 Sobic003G113800 Sobic010G032400--Sobic003G113800 Sobic001G119900 Sobic001G119900 Sobic010G032400--Sobic001G119900 Sobic010G032400--Sobic004G212700 Sobic010G032400--Sobic006G233000 Sobic001G234200 Sobic001G234200 Sobic010G032400--Sobic001G234200 Sobic004G079200 Sobic004G079200 Sobic010G032400--Sobic004G079200 Sobic002G219900 Sobic002G219900 Sobic003G274400--Sobic002G219900 Sobic003G274400--Sobic006G245700 Sobic001G436300 Sobic001G436300 Sobic003G274400--Sobic001G436300 Sobic003G274400--Sobic007G125700 Sobic009G031500 Sobic009G031500 Sobic003G274400--Sobic009G031500 Sobic003G274400--Sobic004G129600 Sobic003G274400--Sobic002G430900 Sobic003G274400--Sobic002G017900 Sobic006G280100 Sobic006G280100 Sobic003G274400--Sobic006G280100 Sobic004G034700 Sobic004G034700 Sobic001G536000--Sobic004G034700 Sobic009G142000 Sobic009G142000 Sobic001G536000--Sobic009G142000 Sobic002G405500 Sobic002G405500 Sobic001G536000--Sobic002G405500 Sobic001G451300 Sobic001G451300 Sobic001G536000--Sobic001G451300 Sobic001G239800 Sobic001G239800 Sobic001G536000--Sobic001G239800 Sobic001G453000 Sobic001G453000 Sobic001G536000--Sobic001G453000 Sobic003G375200 Sobic003G375200 Sobic001G536000--Sobic003G375200 Sobic006G112700 Sobic006G112700 Sobic001G536000--Sobic006G112700 Sobic003G294600 Sobic003G294600 Sobic001G536000--Sobic003G294600 Sobic006G014100 Sobic006G014100 Sobic004G155600--Sobic006G014100 Sobic004G155600--Sobic006G270600 Sobic006G080400 Sobic006G080400 Sobic004G155600--Sobic006G080400 Sobic004G355800 Sobic004G355800 Sobic004G155600--Sobic004G355800 Sobic002G425500 Sobic002G425500 Sobic004G155600--Sobic002G425500 Sobic006G118700 Sobic006G118700 Sobic004G155600--Sobic006G118700 Sobic006G210000 Sobic006G210000 Sobic004G155600--Sobic006G210000 Sobic002G145800 Sobic002G145800 Sobic004G155600--Sobic002G145800 Sobic001G002600 Sobic001G002600 Sobic004G155600--Sobic001G002600
Octagon: transcription factors


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