Gene annotation
Transcriptome id Sobic.001G040500.1,Sobic.001G040500.2,Sobic.001G040500.3
Synonym Sb01g003740
Functional annotation RING finger protein 126, putative, expressed
UniProt A0A1B6QH78
Pfam PF14369 PF13639
Panther DB PTHR22763 PTHR22763:SF86
NCBI CDD -
KEGG Orthology K11982; E3 ubiquitin-protein ligase RNF115/126
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G55530 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os03g59760.1 : RING finger protein 126, putative, expressed
MaizeGDB (Corn) Zm00025a016467
Brachypodium KQK12512 , KQK12513
Barley HORVU5Hr1G111530.2 , HORVU5Hr1G111530.3 , HORVU5Hr1G111530.1 , HORVU5Hr1G111530.4 , HORVU5Hr1G111530.5
Wheat -
Populus -


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cDNA sequences
Sobic.001G040500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G005500 expressed protein -
2 Sobic.006G183800 KH domain containing protein, putative, expressed K13095: splicing factor 1
3 Sobic.002G248400 ENT domain containing protein, expressed -
4 Sobic.009G056800 growth inhibition and differentiation-related protein 88, putative, expressed -
5 Sobic.001G409600 KH domain containing protein, putative, expressed K13095: splicing factor 1
6 Sobic.004G271000 expressed protein -
7 Sobic.007G207000 Highest expression level in primordial inflorescence(PubMedID : 27501690)@OsSPL15 - SBP-box gene family member, expressed -
8 Sobic.007G009400 bromodomain domain containing protein, expressed -
9 Sobic.003G038500 SSRP1-like FACT complex subunit, putative, expressed K09272: structure-specific recognition protein 1
10 Sobic.008G192600 serine/threonine-protein kinase PRP4, putative, expressed K08827: serine/threonine-protein kinase PRP4
11 Sobic.009G178800 bZIP transcription factor, putative, expressed K14432: ABA responsive element binding factor
12 Sobic.007G200600 ZOS8-11 - C2H2 zinc finger protein, expressed -
13 Sobic.007G096000 expressed protein -
14 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
15 Sobic.008G054500 WD domain, G-beta repeat domain containing protein, expressed -
16 Sobic.004G257400 WD-40 repeat family protein, putative, expressed -
17 Sobic.003G438400 expressed protein -
18 Sobic.008G063000 transcriptional corepressor SEUSS, putative, expressed -
19 Sobic.009G026500 ATSIZ1/SIZ1, putative, expressed -
20 Sobic.003G372700 expressed protein -


Gene co-expression network
sample Sobic001G040500 Sobic001G040500 Sobic009G005500 Sobic009G005500 Sobic001G040500--Sobic009G005500 Sobic006G183800 Sobic006G183800 Sobic001G040500--Sobic006G183800 Sobic002G248400 Sobic002G248400 Sobic001G040500--Sobic002G248400 Sobic009G056800 Sobic009G056800 Sobic001G040500--Sobic009G056800 Sobic001G409600 Sobic001G409600 Sobic001G040500--Sobic001G409600 Sobic004G271000 Sobic004G271000 Sobic001G040500--Sobic004G271000 Sobic007G207000 Sobic007G207000 Sobic001G040500--Sobic007G207000 Sobic007G009400 Sobic007G009400 Sobic001G040500--Sobic007G009400 Sobic003G038500 Sobic003G038500 Sobic001G040500--Sobic003G038500 Sobic010G069100 Sobic010G069100 Sobic009G005500--Sobic010G069100 Sobic001G088100 Sobic001G088100 Sobic009G005500--Sobic001G088100 Sobic001G289600 Sobic001G289600 Sobic009G005500--Sobic001G289600 Sobic007G117400 Sobic007G117400 Sobic009G005500--Sobic007G117400 Sobic001G540400 Sobic001G540400 Sobic009G005500--Sobic001G540400 Sobic008G047800 Sobic008G047800 Sobic009G005500--Sobic008G047800 Sobic003G389200 Sobic003G389200 Sobic009G005500--Sobic003G389200 Sobic009G005500--Sobic001G409600 Sobic007G105100 Sobic007G105100 Sobic009G005500--Sobic007G105100 Sobic001G094000 Sobic001G094000 Sobic006G183800--Sobic001G094000 Sobic003G187400 Sobic003G187400 Sobic006G183800--Sobic003G187400 Sobic009G178800 Sobic009G178800 Sobic006G183800--Sobic009G178800 Sobic008G054500 Sobic008G054500 Sobic006G183800--Sobic008G054500 Sobic009G040700 Sobic009G040700 Sobic006G183800--Sobic009G040700 Sobic003G084900 Sobic003G084900 Sobic006G183800--Sobic003G084900 Sobic008G078100 Sobic008G078100 Sobic006G183800--Sobic008G078100 Sobic006G183800--Sobic001G409600 Sobic002G157000 Sobic002G157000 Sobic006G183800--Sobic002G157000 Sobic002G248400--Sobic002G157000 Sobic003G108700 Sobic003G108700 Sobic002G248400--Sobic003G108700 Sobic003G268300 Sobic003G268300 Sobic002G248400--Sobic003G268300 Sobic001G420200 Sobic001G420200 Sobic002G248400--Sobic001G420200 Sobic002G320500 Sobic002G320500 Sobic002G248400--Sobic002G320500 Sobic003G200200 Sobic003G200200 Sobic002G248400--Sobic003G200200 Sobic006G032400 Sobic006G032400 Sobic002G248400--Sobic006G032400 Sobic001G090400 Sobic001G090400 Sobic002G248400--Sobic001G090400 Sobic004G257400 Sobic004G257400 Sobic002G248400--Sobic004G257400 Sobic004G021100 Sobic004G021100 Sobic009G056800--Sobic004G021100 Sobic006G173100 Sobic006G173100 Sobic009G056800--Sobic006G173100 Sobic004G350100 Sobic004G350100 Sobic009G056800--Sobic004G350100 Sobic002G388200 Sobic002G388200 Sobic009G056800--Sobic002G388200 Sobic003G081000 Sobic003G081000 Sobic009G056800--Sobic003G081000 Sobic001G512700 Sobic001G512700 Sobic009G056800--Sobic001G512700 Sobic002G157300 Sobic002G157300 Sobic009G056800--Sobic002G157300 Sobic007G118200 Sobic007G118200 Sobic009G056800--Sobic007G118200 Sobic007G104800 Sobic007G104800 Sobic009G056800--Sobic007G104800 Sobic003G397800 Sobic003G397800 Sobic001G409600--Sobic003G397800 Sobic010G101800 Sobic010G101800 Sobic001G409600--Sobic010G101800 Sobic002G297200 Sobic002G297200 Sobic001G409600--Sobic002G297200 Sobic001G109800 Sobic001G109800 Sobic001G409600--Sobic001G109800 Sobic001G125200 Sobic001G125200 Sobic001G409600--Sobic001G125200 Sobic007G096000 Sobic007G096000 Sobic001G409600--Sobic007G096000 Sobic009G249200 Sobic009G249200 Sobic001G409600--Sobic009G249200 Sobic001G409600--Sobic003G187400 Sobic001G016000 Sobic001G016000 Sobic001G409600--Sobic001G016000 Sobic004G213000 Sobic004G213000 Sobic004G271000--Sobic004G213000 Sobic010G201500 Sobic010G201500 Sobic004G271000--Sobic010G201500 Sobic004G271000--Sobic006G032400 Sobic004G271000--Sobic010G069100 Sobic004G271000--Sobic002G248400 Sobic001G206100 Sobic001G206100 Sobic004G271000--Sobic001G206100 Sobic007G000100 Sobic007G000100 Sobic004G271000--Sobic007G000100 Sobic008G067600 Sobic008G067600 Sobic004G271000--Sobic008G067600 Sobic004G271000--Sobic003G397800 Sobic007G207000--Sobic001G125200 Sobic001G474600 Sobic001G474600 Sobic007G207000--Sobic001G474600 Sobic003G101400 Sobic003G101400 Sobic007G207000--Sobic003G101400 Sobic009G191000 Sobic009G191000 Sobic007G207000--Sobic009G191000 Sobic001G196500 Sobic001G196500 Sobic007G207000--Sobic001G196500 Sobic007G207000--Sobic001G540400 Sobic004G351100 Sobic004G351100 Sobic007G207000--Sobic004G351100 Sobic002G309600 Sobic002G309600 Sobic007G207000--Sobic002G309600 Sobic001G050200 Sobic001G050200 Sobic007G207000--Sobic001G050200 Sobic003G241200 Sobic003G241200 Sobic007G009400--Sobic003G241200 Sobic003G401100 Sobic003G401100 Sobic007G009400--Sobic003G401100 Sobic004G205600 Sobic004G205600 Sobic007G009400--Sobic004G205600 Sobic007G009400--Sobic010G101800 Sobic007G009400--Sobic007G104800 Sobic004G325400 Sobic004G325400 Sobic007G009400--Sobic004G325400 Sobic007G009400--Sobic002G388200 Sobic007G009400--Sobic001G409600 Sobic007G009400--Sobic003G081000 Sobic010G209400 Sobic010G209400 Sobic003G038500--Sobic010G209400 Sobic007G126600 Sobic007G126600 Sobic003G038500--Sobic007G126600 Sobic003G422300 Sobic003G422300 Sobic003G038500--Sobic003G422300 Sobic003G038500--Sobic004G257400 Sobic007G026300 Sobic007G026300 Sobic003G038500--Sobic007G026300 Sobic003G038500--Sobic001G090400 Sobic003G119000 Sobic003G119000 Sobic003G038500--Sobic003G119000 Sobic003G038500--Sobic002G248400 Sobic001G511500 Sobic001G511500 Sobic003G038500--Sobic001G511500
Octagon: transcription factors


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