Gene annotation
Transcriptome id Sobic.001G376800.1
Synonym Sb01g035760
Functional annotation -
UniProt C5X0P4
Pfam PF00271 PF00270
Panther DB PTHR24031 PTHR24031:SF233
NCBI CDD -
KEGG Orthology K13116; DDX41, ATP-dependent RNA helicase DDX41
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G51280 : DEAD-box protein abstrakt, putative
RAP-DB (Rice) LOC_Os02g05660.1 : DEAD-box ATP-dependent RNA helicase 35A, putative, expressed
MaizeGDB (Corn) Zm00025a052404
Brachypodium KQJ93347
Barley HORVU5Hr1G048040.1 , HORVU3Hr1G022710.1
Wheat TraesCS5A02G153700 , TraesCS3B02G141300 , TraesCS5D02G159000 , TraesCS3A02G122100 , TraesCS5B02G152200
Populus PNT42633 , PNT42632 , PNT42631


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cDNA sequences
Sobic.001G376800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G034600 zinc ion binding protein, putative, expressed -
2 Sobic.007G056500 cullin, putative, expressed K03869: cullin 3
3 Sobic.006G121300 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
4 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
5 Sobic.004G059000 serine/threonine-protein kinase HT1, putative, expressed -
6 Sobic.006G017000 WD domain, G-beta repeat domain containing protein, expressed K12862: PLRG1, PRL1, pleiotropic regulator 1
7 Sobic.010G028300 bromodomain domain containing protein, expressed -
8 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
9 Sobic.001G131800 expressed protein K15186: ELL-associated factor
10 Sobic.009G198100 expressed protein -
11 Sobic.002G256300 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
13 Sobic.006G002500 basic salivary proline-rich protein 2 precursor, putative, expressed -
14 Sobic.010G095700 DCN1-like protein 2, putative, expressed K17822: DCN1-like protein 1/2
15 Sobic.007G111100 PSF3 - Putative GINS complex subunit, expressed K10734: GINS complex subunit 3
16 Sobic.001G390500 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
17 Sobic.002G383300 MYST-like histone acetyltransferase 1, putative, expressed K11308: MYST1, MOF, histone acetyltransferase MYST1
18 Sobic.007G046200 ELF7, putative, expressed K15174: RNA polymerase II-associated factor 1
19 Sobic.006G225300 expressed protein -
20 Sobic.001G497900 XS domain containing protein, expressed -


Gene co-expression network
sample Sobic001G376800 Sobic001G376800 Sobic002G034600 Sobic002G034600 Sobic001G376800--Sobic002G034600 Sobic007G056500 Sobic007G056500 Sobic001G376800--Sobic007G056500 Sobic006G121300 Sobic006G121300 Sobic001G376800--Sobic006G121300 Sobic001G473600 Sobic001G473600 Sobic001G376800--Sobic001G473600 Sobic004G059000 Sobic004G059000 Sobic001G376800--Sobic004G059000 Sobic006G017000 Sobic006G017000 Sobic001G376800--Sobic006G017000 Sobic010G028300 Sobic010G028300 Sobic001G376800--Sobic010G028300 Sobic001G395100 Sobic001G395100 Sobic001G376800--Sobic001G395100 Sobic001G131800 Sobic001G131800 Sobic001G376800--Sobic001G131800 Sobic009G198100 Sobic009G198100 Sobic002G034600--Sobic009G198100 Sobic007G119200 Sobic007G119200 Sobic002G034600--Sobic007G119200 Sobic003G081000 Sobic003G081000 Sobic002G034600--Sobic003G081000 Sobic002G034600--Sobic001G473600 Sobic003G355000 Sobic003G355000 Sobic002G034600--Sobic003G355000 Sobic007G118200 Sobic007G118200 Sobic002G034600--Sobic007G118200 Sobic002G264200 Sobic002G264200 Sobic002G034600--Sobic002G264200 Sobic001G356600 Sobic001G356600 Sobic002G034600--Sobic001G356600 Sobic010G236400 Sobic010G236400 Sobic002G034600--Sobic010G236400 Sobic006G186400 Sobic006G186400 Sobic007G056500--Sobic006G186400 Sobic007G056500--Sobic002G034600 Sobic001G042200 Sobic001G042200 Sobic007G056500--Sobic001G042200 Sobic010G077500 Sobic010G077500 Sobic007G056500--Sobic010G077500 Sobic010G095700 Sobic010G095700 Sobic007G056500--Sobic010G095700 Sobic004G180900 Sobic004G180900 Sobic007G056500--Sobic004G180900 Sobic007G056500--Sobic001G395100 Sobic001G066300 Sobic001G066300 Sobic007G056500--Sobic001G066300 Sobic007G056500--Sobic006G121300 Sobic006G121300--Sobic001G395100 Sobic006G121300--Sobic002G034600 Sobic001G216100 Sobic001G216100 Sobic006G121300--Sobic001G216100 Sobic006G121300--Sobic010G028300 Sobic006G121300--Sobic007G056500 Sobic006G121300--Sobic001G473600 Sobic008G179700 Sobic008G179700 Sobic006G121300--Sobic008G179700 Sobic003G401100 Sobic003G401100 Sobic006G121300--Sobic003G401100 Sobic005G160400 Sobic005G160400 Sobic006G121300--Sobic005G160400 Sobic001G473600--Sobic002G034600 Sobic003G352200 Sobic003G352200 Sobic001G473600--Sobic003G352200 Sobic007G046200 Sobic007G046200 Sobic001G473600--Sobic007G046200 Sobic001G473600--Sobic001G395100 Sobic004G353000 Sobic004G353000 Sobic001G473600--Sobic004G353000 Sobic007G084100 Sobic007G084100 Sobic001G473600--Sobic007G084100 Sobic001G088100 Sobic001G088100 Sobic001G473600--Sobic001G088100 Sobic007G041300 Sobic007G041300 Sobic001G473600--Sobic007G041300 Sobic007G075900 Sobic007G075900 Sobic001G473600--Sobic007G075900 Sobic004G305600 Sobic004G305600 Sobic004G059000--Sobic004G305600 Sobic001G061700 Sobic001G061700 Sobic004G059000--Sobic001G061700 Sobic003G250500 Sobic003G250500 Sobic004G059000--Sobic003G250500 Sobic007G019800 Sobic007G019800 Sobic004G059000--Sobic007G019800 Sobic004G253000 Sobic004G253000 Sobic004G059000--Sobic004G253000 Sobic004G059000--Sobic001G131800 Sobic002G256300 Sobic002G256300 Sobic004G059000--Sobic002G256300 Sobic002G365100 Sobic002G365100 Sobic004G059000--Sobic002G365100 Sobic003G405700 Sobic003G405700 Sobic004G059000--Sobic003G405700 Sobic004G066200 Sobic004G066200 Sobic006G017000--Sobic004G066200 Sobic009G228700 Sobic009G228700 Sobic006G017000--Sobic009G228700 Sobic006G101700 Sobic006G101700 Sobic006G017000--Sobic006G101700 Sobic004G353200 Sobic004G353200 Sobic006G017000--Sobic004G353200 Sobic001G360200 Sobic001G360200 Sobic006G017000--Sobic001G360200 Sobic001G392300 Sobic001G392300 Sobic006G017000--Sobic001G392300 Sobic002G347000 Sobic002G347000 Sobic006G017000--Sobic002G347000 Sobic007G166400 Sobic007G166400 Sobic006G017000--Sobic007G166400 Sobic010G027600 Sobic010G027600 Sobic006G017000--Sobic010G027600 Sobic010G028300--Sobic003G401100 Sobic002G350300 Sobic002G350300 Sobic010G028300--Sobic002G350300 Sobic001G056200 Sobic001G056200 Sobic010G028300--Sobic001G056200 Sobic010G028300--Sobic006G121300 Sobic010G028300--Sobic001G131800 Sobic001G315100 Sobic001G315100 Sobic010G028300--Sobic001G315100 Sobic010G028300--Sobic008G179700 Sobic010G028300--Sobic003G081000 Sobic004G013600 Sobic004G013600 Sobic010G028300--Sobic004G013600 Sobic001G395100--Sobic006G121300 Sobic001G395100--Sobic002G034600 Sobic007G191700 Sobic007G191700 Sobic001G395100--Sobic007G191700 Sobic001G395100--Sobic001G473600 Sobic001G469800 Sobic001G469800 Sobic001G395100--Sobic001G469800 Sobic007G027700 Sobic007G027700 Sobic001G395100--Sobic007G027700 Sobic001G395100--Sobic007G056500 Sobic006G248500 Sobic006G248500 Sobic001G395100--Sobic006G248500 Sobic001G395100--Sobic001G042200 Sobic008G174300 Sobic008G174300 Sobic001G131800--Sobic008G174300 Sobic001G131800--Sobic003G081000 Sobic010G202600 Sobic010G202600 Sobic001G131800--Sobic010G202600 Sobic010G033400 Sobic010G033400 Sobic001G131800--Sobic010G033400 Sobic001G131800--Sobic009G198100 Sobic007G132400 Sobic007G132400 Sobic001G131800--Sobic007G132400 Sobic001G107500 Sobic001G107500 Sobic001G131800--Sobic001G107500 Sobic007G111100 Sobic007G111100 Sobic001G131800--Sobic007G111100 Sobic003G359300 Sobic003G359300 Sobic001G131800--Sobic003G359300
Octagon: transcription factors


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