Gene annotation
Transcriptome id Sobic.003G115100.1,Sobic.003G115100.2
Synonym IMPA1, AIMPALPHA, Sb03g009700, IMPA-1, ATKAPALPHA, AT-IMP
Functional annotation importin subunit alpha, putative, expressed
UniProt A0A1B6Q2M6 , A0A1B6Q2M8
Pfam PF16186 PF00514 PF16186 PF01749 PF00514
Panther DB PTHR23316 PTHR23316:SF18
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0008565obsolete protein transporter activity GO:0006606protein import into nucleus GO:0005737cytoplasm GO:0005634nucleus GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G06720 : importin alpha isoform 1
RAP-DB (Rice) LOC_Os01g14950.1 : importin subunit alpha, putative, expressed
MaizeGDB (Corn) Zm00025a035342 , Zm00025a023942
Brachypodium KQK03624
Barley HORVU3Hr1G034750.8 , HORVU3Hr1G034750.9 , HORVU3Hr1G034750.6 , HORVU3Hr1G034750.7 , HORVU3Hr1G034750.4 , HORVU3Hr1G034750.5 , HORVU3Hr1G034750.2 , HORVU3Hr1G034750.3 , HORVU3Hr1G034750.1
Wheat TraesCS3A02G172000 , TraesCS3A02G172000 , TraesCS1B02G126500 , TraesCS3D02G178500 , TraesCS3D02G178500 , TraesCS1D02G106200 , TraesCS1A02G097400 , TraesCS3B02G202800 , TraesCS3B02G202800 , TraesCS3B02G202800
Populus PNT13929 , PNT13928 , PNT06071 , PNT06070 , PNT13930


JBrowse

Open New Page


cDNA sequences
Sobic.003G115100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G226000 WD domain, G-beta repeat domain containing protein, expressed K10599: PRPF19, pre-mRNA-processing factor 19
2 Sobic.009G151200 expressed protein -
3 Sobic.001G010600 U2 small nuclear ribonucleoprotein A, putative, expressed K11092: U2 small nuclear ribonucleoprotein A'
4 Sobic.009G030300 RNA polymerase II-associated protein 3, putative, expressed -
5 Sobic.007G195400 FHA domain containing protein, putative, expressed -
6 Sobic.004G013600 autophagy protein 5, putative, expressed K08339: autophagy-related protein 5
7 Sobic.005G216300 RNA recognition motif containing protein, expressed K12837: splicing factor U2AF 65 kDa subunit
8 Sobic.002G058300 ES43 protein, putative, expressed -
9 Sobic.004G011000 expressed protein K11883: RNA-binding protein NOB1
10 Sobic.001G138400 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck
11 Sobic.001G142100 WD domain, G-beta repeat domain containing protein, expressed K04536: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
12 Sobic.005G009200 expressed protein -
13 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
14 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
15 Sobic.002G224700 NFKB, putative, expressed -
16 Sobic.007G205000 zinc finger family protein, putative, expressed -
17 Sobic.004G007300 expressed protein -
18 Sobic.008G127400 OsFBX252 - F-box domain containing protein, expressed -
19 Sobic.002G259800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
20 Sobic.006G267300 expressed protein -


Gene co-expression network
sample Sobic003G115100 Sobic003G115100 Sobic001G226000 Sobic001G226000 Sobic003G115100--Sobic001G226000 Sobic009G151200 Sobic009G151200 Sobic003G115100--Sobic009G151200 Sobic001G010600 Sobic001G010600 Sobic003G115100--Sobic001G010600 Sobic009G030300 Sobic009G030300 Sobic003G115100--Sobic009G030300 Sobic007G195400 Sobic007G195400 Sobic003G115100--Sobic007G195400 Sobic004G013600 Sobic004G013600 Sobic003G115100--Sobic004G013600 Sobic005G216300 Sobic005G216300 Sobic003G115100--Sobic005G216300 Sobic002G058300 Sobic002G058300 Sobic003G115100--Sobic002G058300 Sobic004G011000 Sobic004G011000 Sobic003G115100--Sobic004G011000 Sobic001G226000--Sobic009G030300 Sobic006G278700 Sobic006G278700 Sobic001G226000--Sobic006G278700 Sobic006G267300 Sobic006G267300 Sobic001G226000--Sobic006G267300 Sobic001G226000--Sobic003G115100 Sobic002G077900 Sobic002G077900 Sobic001G226000--Sobic002G077900 Sobic009G195200 Sobic009G195200 Sobic001G226000--Sobic009G195200 Sobic003G433500 Sobic003G433500 Sobic001G226000--Sobic003G433500 Sobic001G226000--Sobic001G010600 Sobic001G226000--Sobic004G013600 Sobic006G248500 Sobic006G248500 Sobic009G151200--Sobic006G248500 Sobic002G259800 Sobic002G259800 Sobic009G151200--Sobic002G259800 Sobic005G133500 Sobic005G133500 Sobic009G151200--Sobic005G133500 Sobic004G285000 Sobic004G285000 Sobic009G151200--Sobic004G285000 Sobic001G424600 Sobic001G424600 Sobic009G151200--Sobic001G424600 Sobic004G085300 Sobic004G085300 Sobic009G151200--Sobic004G085300 Sobic008G100100 Sobic008G100100 Sobic009G151200--Sobic008G100100 Sobic004G086200 Sobic004G086200 Sobic009G151200--Sobic004G086200 Sobic004G156500 Sobic004G156500 Sobic009G151200--Sobic004G156500 Sobic001G010600--Sobic002G058300 Sobic007G205000 Sobic007G205000 Sobic001G010600--Sobic007G205000 Sobic007G086500 Sobic007G086500 Sobic001G010600--Sobic007G086500 Sobic001G010600--Sobic001G226000 Sobic001G010600--Sobic003G115100 Sobic009G140700 Sobic009G140700 Sobic001G010600--Sobic009G140700 Sobic001G010600--Sobic004G013600 Sobic010G028300 Sobic010G028300 Sobic001G010600--Sobic010G028300 Sobic008G139700 Sobic008G139700 Sobic001G010600--Sobic008G139700 Sobic002G177400 Sobic002G177400 Sobic009G030300--Sobic002G177400 Sobic009G030300--Sobic001G226000 Sobic004G061900 Sobic004G061900 Sobic009G030300--Sobic004G061900 Sobic009G044900 Sobic009G044900 Sobic009G030300--Sobic009G044900 Sobic009G030300--Sobic004G013600 Sobic004G088400 Sobic004G088400 Sobic009G030300--Sobic004G088400 Sobic008G117200 Sobic008G117200 Sobic009G030300--Sobic008G117200 Sobic002G334600 Sobic002G334600 Sobic009G030300--Sobic002G334600 Sobic008G129700 Sobic008G129700 Sobic009G030300--Sobic008G129700 Sobic003G359300 Sobic003G359300 Sobic007G195400--Sobic003G359300 Sobic007G195400--Sobic004G061900 Sobic008G034600 Sobic008G034600 Sobic007G195400--Sobic008G034600 Sobic007G191100 Sobic007G191100 Sobic007G195400--Sobic007G191100 Sobic006G129700 Sobic006G129700 Sobic007G195400--Sobic006G129700 Sobic003G093600 Sobic003G093600 Sobic007G195400--Sobic003G093600 Sobic001G216600 Sobic001G216600 Sobic007G195400--Sobic001G216600 Sobic007G195400--Sobic002G058300 Sobic007G195400--Sobic003G115100 Sobic001G056200 Sobic001G056200 Sobic004G013600--Sobic001G056200 Sobic001G028400 Sobic001G028400 Sobic004G013600--Sobic001G028400 Sobic003G354100 Sobic003G354100 Sobic004G013600--Sobic003G354100 Sobic010G211300 Sobic010G211300 Sobic004G013600--Sobic010G211300 Sobic004G013600--Sobic006G248500 Sobic004G013600--Sobic007G205000 Sobic004G013600--Sobic009G030300 Sobic003G437500 Sobic003G437500 Sobic004G013600--Sobic003G437500 Sobic007G118200 Sobic007G118200 Sobic004G013600--Sobic007G118200 Sobic003G099300 Sobic003G099300 Sobic005G216300--Sobic003G099300 Sobic007G027700 Sobic007G027700 Sobic005G216300--Sobic007G027700 Sobic004G039600 Sobic004G039600 Sobic005G216300--Sobic004G039600 Sobic001G369000 Sobic001G369000 Sobic005G216300--Sobic001G369000 Sobic001G335900 Sobic001G335900 Sobic005G216300--Sobic001G335900 Sobic001G426600 Sobic001G426600 Sobic005G216300--Sobic001G426600 Sobic001G142100 Sobic001G142100 Sobic005G216300--Sobic001G142100 Sobic003G126600 Sobic003G126600 Sobic005G216300--Sobic003G126600 Sobic006G208500 Sobic006G208500 Sobic005G216300--Sobic006G208500 Sobic002G058300--Sobic003G359300 Sobic002G058300--Sobic007G086500 Sobic002G186000 Sobic002G186000 Sobic002G058300--Sobic002G186000 Sobic002G058300--Sobic001G010600 Sobic003G197800 Sobic003G197800 Sobic002G058300--Sobic003G197800 Sobic009G198100 Sobic009G198100 Sobic002G058300--Sobic009G198100 Sobic010G033400 Sobic010G033400 Sobic002G058300--Sobic010G033400 Sobic002G058300--Sobic006G267300 Sobic002G058300--Sobic007G205000 Sobic008G009600 Sobic008G009600 Sobic004G011000--Sobic008G009600 Sobic009G040500 Sobic009G040500 Sobic004G011000--Sobic009G040500 Sobic004G011000--Sobic003G115100 Sobic009G046700 Sobic009G046700 Sobic004G011000--Sobic009G046700 Sobic010G251100 Sobic010G251100 Sobic004G011000--Sobic010G251100 Sobic004G011000--Sobic001G010600 Sobic001G370300 Sobic001G370300 Sobic004G011000--Sobic001G370300 Sobic010G247400 Sobic010G247400 Sobic004G011000--Sobic010G247400 Sobic009G193850 Sobic009G193850 Sobic004G011000--Sobic009G193850
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.