Gene annotation
Transcriptome id Sobic.007G009700.1
Synonym Sb07g001010
Functional annotation nucleic acid binding protein, putative, expressed
UniProt C5YLV8
Pfam PF06003
Panther DB -
NCBI CDD KOG3026; Splicing factor SPF30
KEGG Orthology K12839; SMNDC1, survival of motor neuron-related-splicing factor 30
Gene Ontology GO:0006397; mRNA processing GO:0005737cytoplasm GO:0005634nucleus GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT2G02570 : nucleic acid binding;RNA binding
RAP-DB (Rice) LOC_Os08g01840.1 : nucleic acid binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a030294
Brachypodium PNT66510 , PNT66509 , KQJ94814 , KQJ94815 , KQJ94816 , KQJ94817
Barley -
Wheat TraesCS7A02G321500 , TraesCS7B02G222400 , TraesCS7D02G318400
Populus -


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cDNA sequences
Sobic.007G009700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
2 Sobic.001G088100 transcriptional adaptor, putative, expressed K11314: TADA2A, transcriptional adapter 2-alpha
3 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -
4 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
5 Sobic.006G096900 expressed protein -
6 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
7 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.001G025000 FACT complex subunit SPT16, putative, expressed -
9 Sobic.003G379200 wound-responsive family protein, putative, expressed -
10 Sobic.002G380200 calmodulin-binding transcription activator, putative, expressed -
11 Sobic.007G075900 SKP1, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
12 Sobic.001G261501 - -
13 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3
14 Sobic.005G100700 mRNA-capping enzyme, putative, expressed -
15 Sobic.003G194500 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
16 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase
17 Sobic.003G214600 transcriptional corepressor LEUNIG, putative, expressed -
18 Sobic.001G008200 expressed protein K13211: GC-rich sequence DNA-binding factor
19 Sobic.007G212300 RNA recognition motif containing protein, putative, expressed -
20 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1


Gene co-expression network
sample Sobic007G009700 Sobic007G009700 Sobic009G044800 Sobic009G044800 Sobic007G009700--Sobic009G044800 Sobic001G088100 Sobic001G088100 Sobic007G009700--Sobic001G088100 Sobic001G227400 Sobic001G227400 Sobic007G009700--Sobic001G227400 Sobic001G473600 Sobic001G473600 Sobic007G009700--Sobic001G473600 Sobic006G096900 Sobic006G096900 Sobic007G009700--Sobic006G096900 Sobic003G360400 Sobic003G360400 Sobic007G009700--Sobic003G360400 Sobic003G352200 Sobic003G352200 Sobic007G009700--Sobic003G352200 Sobic001G025000 Sobic001G025000 Sobic007G009700--Sobic001G025000 Sobic003G379200 Sobic003G379200 Sobic007G009700--Sobic003G379200 Sobic009G044800--Sobic003G360400 Sobic009G044800--Sobic003G352200 Sobic009G044800--Sobic001G227400 Sobic002G045600 Sobic002G045600 Sobic009G044800--Sobic002G045600 Sobic010G116600 Sobic010G116600 Sobic009G044800--Sobic010G116600 Sobic007G218000 Sobic007G218000 Sobic009G044800--Sobic007G218000 Sobic009G044800--Sobic001G025000 Sobic001G433800 Sobic001G433800 Sobic009G044800--Sobic001G433800 Sobic007G183900 Sobic007G183900 Sobic009G044800--Sobic007G183900 Sobic009G005500 Sobic009G005500 Sobic001G088100--Sobic009G005500 Sobic007G119200 Sobic007G119200 Sobic001G088100--Sobic007G119200 Sobic010G069100 Sobic010G069100 Sobic001G088100--Sobic010G069100 Sobic010G236400 Sobic010G236400 Sobic001G088100--Sobic010G236400 Sobic003G394300 Sobic003G394300 Sobic001G088100--Sobic003G394300 Sobic007G105100 Sobic007G105100 Sobic001G088100--Sobic007G105100 Sobic001G241200 Sobic001G241200 Sobic001G088100--Sobic001G241200 Sobic004G274200 Sobic004G274200 Sobic001G088100--Sobic004G274200 Sobic003G408600 Sobic003G408600 Sobic001G088100--Sobic003G408600 Sobic001G227400--Sobic009G044800 Sobic001G227400--Sobic007G218000 Sobic001G493200 Sobic001G493200 Sobic001G227400--Sobic001G493200 Sobic001G493700 Sobic001G493700 Sobic001G227400--Sobic001G493700 Sobic006G088200 Sobic006G088200 Sobic001G227400--Sobic006G088200 Sobic009G084900 Sobic009G084900 Sobic001G227400--Sobic009G084900 Sobic003G195000 Sobic003G195000 Sobic001G227400--Sobic003G195000 Sobic005G172500 Sobic005G172500 Sobic001G227400--Sobic005G172500 Sobic001G289800 Sobic001G289800 Sobic001G227400--Sobic001G289800 Sobic002G034600 Sobic002G034600 Sobic001G473600--Sobic002G034600 Sobic001G473600--Sobic003G352200 Sobic007G046200 Sobic007G046200 Sobic001G473600--Sobic007G046200 Sobic001G395100 Sobic001G395100 Sobic001G473600--Sobic001G395100 Sobic004G353000 Sobic004G353000 Sobic001G473600--Sobic004G353000 Sobic007G084100 Sobic007G084100 Sobic001G473600--Sobic007G084100 Sobic001G473600--Sobic001G088100 Sobic007G041300 Sobic007G041300 Sobic001G473600--Sobic007G041300 Sobic007G075900 Sobic007G075900 Sobic001G473600--Sobic007G075900 Sobic008G063300 Sobic008G063300 Sobic006G096900--Sobic008G063300 Sobic009G177500 Sobic009G177500 Sobic006G096900--Sobic009G177500 Sobic006G252900 Sobic006G252900 Sobic006G096900--Sobic006G252900 Sobic006G096900--Sobic003G360400 Sobic003G095900 Sobic003G095900 Sobic006G096900--Sobic003G095900 Sobic006G056700 Sobic006G056700 Sobic006G096900--Sobic006G056700 Sobic006G096900--Sobic001G433800 Sobic001G384300 Sobic001G384300 Sobic006G096900--Sobic001G384300 Sobic006G096900--Sobic009G044800 Sobic010G112100 Sobic010G112100 Sobic003G360400--Sobic010G112100 Sobic002G154000 Sobic002G154000 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic003G360400--Sobic001G433800 Sobic003G389200 Sobic003G389200 Sobic003G360400--Sobic003G389200 Sobic003G360400--Sobic009G044800 Sobic005G112300 Sobic005G112300 Sobic003G360400--Sobic005G112300 Sobic007G063000 Sobic007G063000 Sobic003G360400--Sobic007G063000 Sobic009G256300 Sobic009G256300 Sobic003G360400--Sobic009G256300 Sobic003G352200--Sobic009G044800 Sobic003G352200--Sobic001G473600 Sobic003G352200--Sobic002G034600 Sobic003G352200--Sobic004G274200 Sobic003G155900 Sobic003G155900 Sobic003G352200--Sobic003G155900 Sobic004G066200 Sobic004G066200 Sobic003G352200--Sobic004G066200 Sobic003G352200--Sobic002G045600 Sobic001G109800 Sobic001G109800 Sobic003G352200--Sobic001G109800 Sobic003G352200--Sobic001G088100 Sobic001G025000--Sobic003G360400 Sobic001G025000--Sobic009G044800 Sobic001G025000--Sobic003G389200 Sobic001G025000--Sobic003G408600 Sobic001G025000--Sobic001G354600 Sobic001G025000--Sobic010G112100 Sobic001G025000--Sobic002G045600 Sobic001G025000--Sobic007G105100 Sobic001G063700 Sobic001G063700 Sobic001G025000--Sobic001G063700 Sobic006G261400 Sobic006G261400 Sobic003G379200--Sobic006G261400 Sobic003G379200--Sobic009G044800 Sobic003G379200--Sobic006G088200 Sobic003G379200--Sobic003G360400 Sobic008G083200 Sobic008G083200 Sobic003G379200--Sobic008G083200 Sobic010G000800 Sobic010G000800 Sobic003G379200--Sobic010G000800 Sobic003G379200--Sobic001G354600 Sobic003G363700 Sobic003G363700 Sobic003G379200--Sobic003G363700 Sobic006G174850 Sobic006G174850 Sobic003G379200--Sobic006G174850
Octagon: transcription factors


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