Gene annotation
Transcriptome id Sobic.001G465300.1
Synonym Sb01g043650
Functional annotation splicing factor, putative, expressed
UniProt C5WTS8
Pfam -
Panther DB PTHR36364
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G19650 : cyclin-related
RAP-DB (Rice) LOC_Os03g10590.1 : splicing factor, putative, expressed
MaizeGDB (Corn) Zm00025a001153
Brachypodium PNT77959 , KQK23047 , KQK23048
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G465300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G153700 expressed protein -
2 Sobic.002G083800 SNF7 domain containing protein, putative, expressed K12191: charged multivesicular body protein 2A
3 Sobic.010G209000 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
4 Sobic.004G093500 ribosomal protein S7, putative, expressed K13173: arginine and glutamate-rich protein 1
5 Sobic.003G275600 ribosomal RNA assembly protein mis3, putative, expressed K06961: ribosomal RNA assembly protein
6 Sobic.007G004000 YL1 nuclear protein C-terminal domain containing protein, expressed K11664: VPS72, TCFL1, vacuolar protein sorting-associated protein 72
7 Sobic.002G383300 MYST-like histone acetyltransferase 1, putative, expressed K11308: MYST1, MOF, histone acetyltransferase MYST1
8 Sobic.006G179800 HMG1/2, putative, expressed -
9 Sobic.001G029400 RNA-binding motif protein, putative, expressed K13107: RBMX2, RNA-binding motif protein, X-linked 2
10 Sobic.003G366500 transport protein particle component, Bet3, domain containing protein, expressed -
11 Sobic.009G083200 coiled-coil domain-containing protein 25, putative, expressed -
12 Sobic.001G376800 - K13116: DDX41, ATP-dependent RNA helicase DDX41
13 Sobic.007G009700 nucleic acid binding protein, putative, expressed K12839: SMNDC1, survival of motor neuron-related-splicing factor 30
14 Sobic.001G515100 ATP binding protein, putative, expressed K06883: uncharacterized protein
15 Sobic.003G075800 expressed protein -
16 Sobic.008G018500 expressed protein -
17 Sobic.002G076800 expressed protein -
18 Sobic.001G152000 elongation factor Tu family protein, putative, expressed K14536: ribosome assembly protein 1
19 Sobic.001G199800 MSP domain containing protein, putative, expressed -
20 Sobic.002G127100 RNA-binding protein Luc7-like, putative, expressed -


Gene co-expression network
sample Sobic001G465300 Sobic001G465300 Sobic003G153700 Sobic003G153700 Sobic001G465300--Sobic003G153700 Sobic002G083800 Sobic002G083800 Sobic001G465300--Sobic002G083800 Sobic010G209000 Sobic010G209000 Sobic001G465300--Sobic010G209000 Sobic004G093500 Sobic004G093500 Sobic001G465300--Sobic004G093500 Sobic003G275600 Sobic003G275600 Sobic001G465300--Sobic003G275600 Sobic007G004000 Sobic007G004000 Sobic001G465300--Sobic007G004000 Sobic002G383300 Sobic002G383300 Sobic001G465300--Sobic002G383300 Sobic006G179800 Sobic006G179800 Sobic001G465300--Sobic006G179800 Sobic001G029400 Sobic001G029400 Sobic001G465300--Sobic001G029400 Sobic003G015900 Sobic003G015900 Sobic003G153700--Sobic003G015900 Sobic003G366500 Sobic003G366500 Sobic003G153700--Sobic003G366500 Sobic003G312200 Sobic003G312200 Sobic003G153700--Sobic003G312200 Sobic001G051200 Sobic001G051200 Sobic003G153700--Sobic001G051200 Sobic004G059000 Sobic004G059000 Sobic003G153700--Sobic004G059000 Sobic002G352600 Sobic002G352600 Sobic003G153700--Sobic002G352600 Sobic009G228700 Sobic009G228700 Sobic003G153700--Sobic009G228700 Sobic001G376800 Sobic001G376800 Sobic003G153700--Sobic001G376800 Sobic002G418700 Sobic002G418700 Sobic003G153700--Sobic002G418700 Sobic004G288100 Sobic004G288100 Sobic002G083800--Sobic004G288100 Sobic002G129200 Sobic002G129200 Sobic002G083800--Sobic002G129200 Sobic003G280300 Sobic003G280300 Sobic002G083800--Sobic003G280300 Sobic002G083800--Sobic001G465300 Sobic003G031200 Sobic003G031200 Sobic002G083800--Sobic003G031200 Sobic003G186700 Sobic003G186700 Sobic002G083800--Sobic003G186700 Sobic004G069500 Sobic004G069500 Sobic002G083800--Sobic004G069500 Sobic002G329700 Sobic002G329700 Sobic002G083800--Sobic002G329700 Sobic001G052900 Sobic001G052900 Sobic002G083800--Sobic001G052900 Sobic007G075900 Sobic007G075900 Sobic010G209000--Sobic007G075900 Sobic006G101700 Sobic006G101700 Sobic010G209000--Sobic006G101700 Sobic008G124900 Sobic008G124900 Sobic010G209000--Sobic008G124900 Sobic001G515100 Sobic001G515100 Sobic010G209000--Sobic001G515100 Sobic006G017000 Sobic006G017000 Sobic010G209000--Sobic006G017000 Sobic007G166400 Sobic007G166400 Sobic010G209000--Sobic007G166400 Sobic008G050800 Sobic008G050800 Sobic010G209000--Sobic008G050800 Sobic001G360200 Sobic001G360200 Sobic010G209000--Sobic001G360200 Sobic001G392300 Sobic001G392300 Sobic010G209000--Sobic001G392300 Sobic003G075800 Sobic003G075800 Sobic004G093500--Sobic003G075800 Sobic002G076800 Sobic002G076800 Sobic004G093500--Sobic002G076800 Sobic002G127100 Sobic002G127100 Sobic004G093500--Sobic002G127100 Sobic003G038500 Sobic003G038500 Sobic004G093500--Sobic003G038500 Sobic001G260400 Sobic001G260400 Sobic004G093500--Sobic001G260400 Sobic004G093500--Sobic001G465300 Sobic004G093500--Sobic007G004000 Sobic001G542300 Sobic001G542300 Sobic004G093500--Sobic001G542300 Sobic004G093500--Sobic003G153700 Sobic001G358600 Sobic001G358600 Sobic003G275600--Sobic001G358600 Sobic004G027500 Sobic004G027500 Sobic003G275600--Sobic004G027500 Sobic003G156500 Sobic003G156500 Sobic003G275600--Sobic003G156500 Sobic001G376400 Sobic001G376400 Sobic003G275600--Sobic001G376400 Sobic001G453400 Sobic001G453400 Sobic003G275600--Sobic001G453400 Sobic001G501400 Sobic001G501400 Sobic003G275600--Sobic001G501400 Sobic002G052700 Sobic002G052700 Sobic003G275600--Sobic002G052700 Sobic010G206300 Sobic010G206300 Sobic003G275600--Sobic010G206300 Sobic002G047000 Sobic002G047000 Sobic003G275600--Sobic002G047000 Sobic004G049700 Sobic004G049700 Sobic007G004000--Sobic004G049700 Sobic007G004000--Sobic002G127100 Sobic006G161000 Sobic006G161000 Sobic007G004000--Sobic006G161000 Sobic002G388500 Sobic002G388500 Sobic007G004000--Sobic002G388500 Sobic007G009700 Sobic007G009700 Sobic007G004000--Sobic007G009700 Sobic007G168300 Sobic007G168300 Sobic007G004000--Sobic007G168300 Sobic006G251900 Sobic006G251900 Sobic007G004000--Sobic006G251900 Sobic010G130100 Sobic010G130100 Sobic007G004000--Sobic010G130100 Sobic003G114500 Sobic003G114500 Sobic007G004000--Sobic003G114500 Sobic002G383300--Sobic003G114500 Sobic001G216100 Sobic001G216100 Sobic002G383300--Sobic001G216100 Sobic006G121300 Sobic006G121300 Sobic002G383300--Sobic006G121300 Sobic010G028300 Sobic010G028300 Sobic002G383300--Sobic010G028300 Sobic009G083200 Sobic009G083200 Sobic002G383300--Sobic009G083200 Sobic007G056500 Sobic007G056500 Sobic002G383300--Sobic007G056500 Sobic002G383300--Sobic001G376800 Sobic002G383300--Sobic007G075900 Sobic006G049100 Sobic006G049100 Sobic002G383300--Sobic006G049100 Sobic004G212700 Sobic004G212700 Sobic006G179800--Sobic004G212700 Sobic002G113900 Sobic002G113900 Sobic006G179800--Sobic002G113900 Sobic001G459100 Sobic001G459100 Sobic006G179800--Sobic001G459100 Sobic004G226800 Sobic004G226800 Sobic006G179800--Sobic004G226800 Sobic002G262000 Sobic002G262000 Sobic006G179800--Sobic002G262000 Sobic001G329300 Sobic001G329300 Sobic006G179800--Sobic001G329300 Sobic004G225300 Sobic004G225300 Sobic006G179800--Sobic004G225300 Sobic006G270900 Sobic006G270900 Sobic006G179800--Sobic006G270900 Sobic003G278300 Sobic003G278300 Sobic006G179800--Sobic003G278300 Sobic002G224700 Sobic002G224700 Sobic001G029400--Sobic002G224700 Sobic001G029400--Sobic001G515100 Sobic003G401100 Sobic003G401100 Sobic001G029400--Sobic003G401100 Sobic007G111100 Sobic007G111100 Sobic001G029400--Sobic007G111100 Sobic001G143500 Sobic001G143500 Sobic001G029400--Sobic001G143500 Sobic001G029400--Sobic010G028300 Sobic003G442000 Sobic003G442000 Sobic001G029400--Sobic003G442000 Sobic002G262700 Sobic002G262700 Sobic001G029400--Sobic002G262700 Sobic007G009400 Sobic007G009400 Sobic001G029400--Sobic007G009400
Octagon: transcription factors


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