Gene annotation
Transcriptome id Sobic.001G199800.1,Sobic.001G199800.2
Synonym (AT)VAP, VAP27, VAP27-1, VAP, Sb01g017630
Functional annotation MSP domain containing protein, putative, expressed
UniProt A0A1Z5S6H5 , C5WWC3
Pfam PF00635
Panther DB PTHR10809 PTHR10809:SF47
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005789; endoplasmic reticulum membrane


Orthologs (automatic annotation)
TAIR AT3G60600 : vesicle associated protein
RAP-DB (Rice) LOC_Os10g36350.1 : MSP domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a006383
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G465300 splicing factor, putative, expressed -
2 Sobic.002G088100 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17778: mitochondrial import inner membrane translocase subunit TIM10
3 Sobic.002G419100 eukaryotic translation initiation factor 2 subunit beta, putative, expressed K03238: translation initiation factor 2 subunit 2
4 Sobic.009G217900 expressed protein K06875: PDCD5, programmed cell death protein 5
5 Sobic.001G402800 - -
6 Sobic.002G083800 SNF7 domain containing protein, putative, expressed K12191: charged multivesicular body protein 2A
7 Sobic.009G213500 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
8 Sobic.002G159500 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
9 Sobic.002G301300 SNF7 domain containing protein, putative, expressed K12193: VPS24, charged multivesicular body protein 3
10 Sobic.009G164500 clathrin adaptor complex small chain domain containing protein, expressed -
11 Sobic.003G189000 ras-related protein, putative, expressed K07874: Ras-related protein Rab-1A
12 Sobic.002G084500 expressed protein -
13 Sobic.001G388200 ELMO/CED-12 family protein, putative, expressed -
14 Sobic.003G153700 expressed protein -
15 Sobic.001G408900 OsPDIL5-1 protein disulfide isomerase PDIL5-1, expressed -
16 Sobic.003G186700 ubiquitin carboxyl-terminal hydrolase 6, putative, expressed K11843: USP14, ubiquitin carboxyl-terminal hydrolase 14
17 Sobic.003G366500 transport protein particle component, Bet3, domain containing protein, expressed -
18 Sobic.003G304700 AGAP003732-PA, putative, expressed -
19 Sobic.003G440800 vacuolar protein sorting 55 family protein, putative, expressed -
20 Sobic.004G288100 HSPC171 protein, putative, expressed -


Gene co-expression network
sample Sobic001G199800 Sobic001G199800 Sobic001G465300 Sobic001G465300 Sobic001G199800--Sobic001G465300 Sobic002G088100 Sobic002G088100 Sobic001G199800--Sobic002G088100 Sobic002G419100 Sobic002G419100 Sobic001G199800--Sobic002G419100 Sobic009G217900 Sobic009G217900 Sobic001G199800--Sobic009G217900 Sobic001G402800 Sobic001G402800 Sobic001G199800--Sobic001G402800 Sobic002G083800 Sobic002G083800 Sobic001G199800--Sobic002G083800 Sobic009G213500 Sobic009G213500 Sobic001G199800--Sobic009G213500 Sobic002G159500 Sobic002G159500 Sobic001G199800--Sobic002G159500 Sobic002G301300 Sobic002G301300 Sobic001G199800--Sobic002G301300 Sobic003G153700 Sobic003G153700 Sobic001G465300--Sobic003G153700 Sobic001G465300--Sobic002G083800 Sobic010G209000 Sobic010G209000 Sobic001G465300--Sobic010G209000 Sobic004G093500 Sobic004G093500 Sobic001G465300--Sobic004G093500 Sobic003G275600 Sobic003G275600 Sobic001G465300--Sobic003G275600 Sobic007G004000 Sobic007G004000 Sobic001G465300--Sobic007G004000 Sobic002G383300 Sobic002G383300 Sobic001G465300--Sobic002G383300 Sobic006G179800 Sobic006G179800 Sobic001G465300--Sobic006G179800 Sobic001G029400 Sobic001G029400 Sobic001G465300--Sobic001G029400 Sobic002G329700 Sobic002G329700 Sobic002G088100--Sobic002G329700 Sobic003G396800 Sobic003G396800 Sobic002G088100--Sobic003G396800 Sobic004G264700 Sobic004G264700 Sobic002G088100--Sobic004G264700 Sobic002G088100--Sobic001G199800 Sobic004G288100 Sobic004G288100 Sobic002G088100--Sobic004G288100 Sobic001G370500 Sobic001G370500 Sobic002G088100--Sobic001G370500 Sobic007G140600 Sobic007G140600 Sobic002G088100--Sobic007G140600 Sobic009G228600 Sobic009G228600 Sobic002G088100--Sobic009G228600 Sobic008G050700 Sobic008G050700 Sobic002G088100--Sobic008G050700 Sobic002G419100--Sobic009G213500 Sobic010G205300 Sobic010G205300 Sobic002G419100--Sobic010G205300 Sobic003G186700 Sobic003G186700 Sobic002G419100--Sobic003G186700 Sobic002G084500 Sobic002G084500 Sobic002G419100--Sobic002G084500 Sobic002G341800 Sobic002G341800 Sobic002G419100--Sobic002G341800 Sobic004G310500 Sobic004G310500 Sobic002G419100--Sobic004G310500 Sobic004G212200 Sobic004G212200 Sobic002G419100--Sobic004G212200 Sobic006G252200 Sobic006G252200 Sobic002G419100--Sobic006G252200 Sobic003G349300 Sobic003G349300 Sobic002G419100--Sobic003G349300 Sobic004G130100 Sobic004G130100 Sobic009G217900--Sobic004G130100 Sobic002G363100 Sobic002G363100 Sobic009G217900--Sobic002G363100 Sobic001G501200 Sobic001G501200 Sobic009G217900--Sobic001G501200 Sobic009G217900--Sobic010G205300 Sobic005G033200 Sobic005G033200 Sobic009G217900--Sobic005G033200 Sobic010G042100 Sobic010G042100 Sobic009G217900--Sobic010G042100 Sobic001G314500 Sobic001G314500 Sobic009G217900--Sobic001G314500 Sobic003G440800 Sobic003G440800 Sobic009G217900--Sobic003G440800 Sobic009G198500 Sobic009G198500 Sobic009G217900--Sobic009G198500 Sobic004G250500 Sobic004G250500 Sobic001G402800--Sobic004G250500 Sobic001G208900 Sobic001G208900 Sobic001G402800--Sobic001G208900 Sobic001G402800--Sobic001G199800 Sobic005G132200 Sobic005G132200 Sobic001G402800--Sobic005G132200 Sobic010G132900 Sobic010G132900 Sobic001G402800--Sobic010G132900 Sobic002G389900 Sobic002G389900 Sobic001G402800--Sobic002G389900 Sobic005G188300 Sobic005G188300 Sobic001G402800--Sobic005G188300 Sobic001G402800--Sobic002G159500 Sobic006G011000 Sobic006G011000 Sobic001G402800--Sobic006G011000 Sobic002G083800--Sobic004G288100 Sobic002G129200 Sobic002G129200 Sobic002G083800--Sobic002G129200 Sobic003G280300 Sobic003G280300 Sobic002G083800--Sobic003G280300 Sobic002G083800--Sobic001G465300 Sobic003G031200 Sobic003G031200 Sobic002G083800--Sobic003G031200 Sobic002G083800--Sobic003G186700 Sobic004G069500 Sobic004G069500 Sobic002G083800--Sobic004G069500 Sobic002G083800--Sobic002G329700 Sobic001G052900 Sobic001G052900 Sobic002G083800--Sobic001G052900 Sobic009G213500--Sobic002G419100 Sobic004G216400 Sobic004G216400 Sobic009G213500--Sobic004G216400 Sobic003G312200 Sobic003G312200 Sobic009G213500--Sobic003G312200 Sobic002G071000 Sobic002G071000 Sobic009G213500--Sobic002G071000 Sobic001G283200 Sobic001G283200 Sobic009G213500--Sobic001G283200 Sobic009G213500--Sobic003G186700 Sobic010G002400 Sobic010G002400 Sobic009G213500--Sobic010G002400 Sobic009G075800 Sobic009G075800 Sobic009G213500--Sobic009G075800 Sobic002G262000 Sobic002G262000 Sobic009G213500--Sobic002G262000 Sobic003G189000 Sobic003G189000 Sobic002G159500--Sobic003G189000 Sobic002G376500 Sobic002G376500 Sobic002G159500--Sobic002G376500 Sobic002G222900 Sobic002G222900 Sobic002G159500--Sobic002G222900 Sobic003G104700 Sobic003G104700 Sobic002G159500--Sobic003G104700 Sobic002G159500--Sobic004G130100 Sobic002G196350 Sobic002G196350 Sobic002G159500--Sobic002G196350 Sobic006G141500 Sobic006G141500 Sobic002G159500--Sobic006G141500 Sobic007G096700 Sobic007G096700 Sobic002G159500--Sobic007G096700 Sobic002G159500--Sobic001G501200 Sobic006G257001 Sobic006G257001 Sobic002G301300--Sobic006G257001 Sobic002G131900 Sobic002G131900 Sobic002G301300--Sobic002G131900 Sobic004G253900 Sobic004G253900 Sobic002G301300--Sobic004G253900 Sobic001G206900 Sobic001G206900 Sobic002G301300--Sobic001G206900 Sobic010G188100 Sobic010G188100 Sobic002G301300--Sobic010G188100 Sobic004G274400 Sobic004G274400 Sobic002G301300--Sobic004G274400 Sobic001G283500 Sobic001G283500 Sobic002G301300--Sobic001G283500 Sobic010G026700 Sobic010G026700 Sobic002G301300--Sobic010G026700 Sobic003G052400 Sobic003G052400 Sobic002G301300--Sobic003G052400
Octagon: transcription factors


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