Gene annotation
Transcriptome id Sobic.002G083800.1
Synonym VPS2.1, Sb02g007010
Functional annotation SNF7 domain containing protein, putative, expressed
UniProt C5XDI7
Pfam PF03357
Panther DB PTHR10476 PTHR10476:SF12
NCBI CDD KOG3230; Vacuolar assembly/sorting protein DID4
KEGG Orthology K12191; charged multivesicular body protein 2A
Gene Ontology GO:0007034; vacuolar transport


Orthologs (automatic annotation)
TAIR AT2G06530 : SNF7 family protein
RAP-DB (Rice) LOC_Os07g13270.1 : SNF7 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a013366 , Zm00025a045454
Brachypodium KQK20295
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G083800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G288100 HSPC171 protein, putative, expressed -
2 Sobic.002G129200 DNA-directed RNA polymerase subunit, putative, expressed K03014: RPB6, DNA-directed RNA polymerases I, II, and III subunit RPABC2
3 Sobic.003G280300 STE_MEK_ste7_MAP2K.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
4 Sobic.001G465300 splicing factor, putative, expressed -
5 Sobic.003G031200 translation initiation factor SUI1, putative, expressed -
6 Sobic.003G186700 ubiquitin carboxyl-terminal hydrolase 6, putative, expressed K11843: USP14, ubiquitin carboxyl-terminal hydrolase 14
7 Sobic.004G069500 expressed protein -
8 Sobic.002G329700 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
9 Sobic.001G052900 thioredoxin, putative, expressed K03671: thioredoxin 1
10 Sobic.003G436500 ubiquitin-fold modifier 1 precursor, putative, expressed K12162: ubiquitin-fold modifier 1
11 Sobic.003G130600 MazG nucleotide pyrophosphohydrolase domain containing protein, expressed K11755: phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase
12 Sobic.002G419100 eukaryotic translation initiation factor 2 subunit beta, putative, expressed K03238: translation initiation factor 2 subunit 2
13 Sobic.002G301300 SNF7 domain containing protein, putative, expressed K12193: VPS24, charged multivesicular body protein 3
14 Sobic.006G120200 Rf1, mitochondrial precursor, putative, expressed -
15 Sobic.010G220900 thioredoxin, putative, expressed K03671: thioredoxin 1
16 Sobic.007G123900 WD-40 repeat family protein, putative, expressed -
17 Sobic.002G009800 VIP4, putative, expressed K15177: RNA polymerase-associated protein LEO1
18 Sobic.006G244600 peptidyl-tRNA hydrolase, putative, expressed K04794: peptidyl-tRNA hydrolase, PTH2 family
19 Sobic.002G159500 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
20 Sobic.008G118500 tRNA synthetase, putative, expressed K01867: WARS, tryptophanyl-tRNA synthetase


Gene co-expression network
sample Sobic002G083800 Sobic002G083800 Sobic004G288100 Sobic004G288100 Sobic002G083800--Sobic004G288100 Sobic002G129200 Sobic002G129200 Sobic002G083800--Sobic002G129200 Sobic003G280300 Sobic003G280300 Sobic002G083800--Sobic003G280300 Sobic001G465300 Sobic001G465300 Sobic002G083800--Sobic001G465300 Sobic003G031200 Sobic003G031200 Sobic002G083800--Sobic003G031200 Sobic003G186700 Sobic003G186700 Sobic002G083800--Sobic003G186700 Sobic004G069500 Sobic004G069500 Sobic002G083800--Sobic004G069500 Sobic002G329700 Sobic002G329700 Sobic002G083800--Sobic002G329700 Sobic001G052900 Sobic001G052900 Sobic002G083800--Sobic001G052900 Sobic004G288100--Sobic002G083800 Sobic004G288100--Sobic002G329700 Sobic004G288100--Sobic002G129200 Sobic004G288100--Sobic001G052900 Sobic001G370500 Sobic001G370500 Sobic004G288100--Sobic001G370500 Sobic010G088600 Sobic010G088600 Sobic004G288100--Sobic010G088600 Sobic001G498400 Sobic001G498400 Sobic004G288100--Sobic001G498400 Sobic002G003000 Sobic002G003000 Sobic004G288100--Sobic002G003000 Sobic002G278600 Sobic002G278600 Sobic004G288100--Sobic002G278600 Sobic002G129200--Sobic003G031200 Sobic010G220900 Sobic010G220900 Sobic002G129200--Sobic010G220900 Sobic002G359900 Sobic002G359900 Sobic002G129200--Sobic002G359900 Sobic006G011000 Sobic006G011000 Sobic002G129200--Sobic006G011000 Sobic003G436500 Sobic003G436500 Sobic002G129200--Sobic003G436500 Sobic001G382200 Sobic001G382200 Sobic002G129200--Sobic001G382200 Sobic004G010700 Sobic004G010700 Sobic002G129200--Sobic004G010700 Sobic002G129200--Sobic002G083800 Sobic009G201800 Sobic009G201800 Sobic002G129200--Sobic009G201800 Sobic009G139800 Sobic009G139800 Sobic003G280300--Sobic009G139800 Sobic003G280300--Sobic003G186700 Sobic001G103900 Sobic001G103900 Sobic003G280300--Sobic001G103900 Sobic010G002400 Sobic010G002400 Sobic003G280300--Sobic010G002400 Sobic004G173600 Sobic004G173600 Sobic003G280300--Sobic004G173600 Sobic010G080200 Sobic010G080200 Sobic003G280300--Sobic010G080200 Sobic006G114400 Sobic006G114400 Sobic003G280300--Sobic006G114400 Sobic001G010700 Sobic001G010700 Sobic003G280300--Sobic001G010700 Sobic001G265600 Sobic001G265600 Sobic003G280300--Sobic001G265600 Sobic003G153700 Sobic003G153700 Sobic001G465300--Sobic003G153700 Sobic001G465300--Sobic002G083800 Sobic010G209000 Sobic010G209000 Sobic001G465300--Sobic010G209000 Sobic004G093500 Sobic004G093500 Sobic001G465300--Sobic004G093500 Sobic003G275600 Sobic003G275600 Sobic001G465300--Sobic003G275600 Sobic007G004000 Sobic007G004000 Sobic001G465300--Sobic007G004000 Sobic002G383300 Sobic002G383300 Sobic001G465300--Sobic002G383300 Sobic006G179800 Sobic006G179800 Sobic001G465300--Sobic006G179800 Sobic001G029400 Sobic001G029400 Sobic001G465300--Sobic001G029400 Sobic010G088300 Sobic010G088300 Sobic003G031200--Sobic010G088300 Sobic004G242100 Sobic004G242100 Sobic003G031200--Sobic004G242100 Sobic003G031200--Sobic002G359900 Sobic008G111700 Sobic008G111700 Sobic003G031200--Sobic008G111700 Sobic003G031200--Sobic002G129200 Sobic002G044000 Sobic002G044000 Sobic003G031200--Sobic002G044000 Sobic003G043400 Sobic003G043400 Sobic003G031200--Sobic003G043400 Sobic001G402600 Sobic001G402600 Sobic003G031200--Sobic001G402600 Sobic001G285300 Sobic001G285300 Sobic003G031200--Sobic001G285300 Sobic004G082900 Sobic004G082900 Sobic003G186700--Sobic004G082900 Sobic002G419100 Sobic002G419100 Sobic003G186700--Sobic002G419100 Sobic006G044600 Sobic006G044600 Sobic003G186700--Sobic006G044600 Sobic003G186700--Sobic003G280300 Sobic004G176400 Sobic004G176400 Sobic003G186700--Sobic004G176400 Sobic003G422900 Sobic003G422900 Sobic003G186700--Sobic003G422900 Sobic003G186700--Sobic009G139800 Sobic003G186700--Sobic001G010700 Sobic002G341800 Sobic002G341800 Sobic003G186700--Sobic002G341800 Sobic003G424800 Sobic003G424800 Sobic004G069500--Sobic003G424800 Sobic004G130200 Sobic004G130200 Sobic004G069500--Sobic004G130200 Sobic002G392800 Sobic002G392800 Sobic004G069500--Sobic002G392800 Sobic004G310900 Sobic004G310900 Sobic004G069500--Sobic004G310900 Sobic004G352200 Sobic004G352200 Sobic004G069500--Sobic004G352200 Sobic003G160900 Sobic003G160900 Sobic004G069500--Sobic003G160900 Sobic003G130600 Sobic003G130600 Sobic004G069500--Sobic003G130600 Sobic001G117400 Sobic001G117400 Sobic004G069500--Sobic001G117400 Sobic009G211700 Sobic009G211700 Sobic004G069500--Sobic009G211700 Sobic002G088100 Sobic002G088100 Sobic002G329700--Sobic002G088100 Sobic002G329700--Sobic002G278600 Sobic003G396800 Sobic003G396800 Sobic002G329700--Sobic003G396800 Sobic003G295700 Sobic003G295700 Sobic002G329700--Sobic003G295700 Sobic002G329700--Sobic004G010700 Sobic010G241600 Sobic010G241600 Sobic002G329700--Sobic010G241600 Sobic002G329700--Sobic004G288100 Sobic006G120200 Sobic006G120200 Sobic002G329700--Sobic006G120200 Sobic006G129000 Sobic006G129000 Sobic002G329700--Sobic006G129000 Sobic010G198700 Sobic010G198700 Sobic001G052900--Sobic010G198700 Sobic007G182500 Sobic007G182500 Sobic001G052900--Sobic007G182500 Sobic009G057500 Sobic009G057500 Sobic001G052900--Sobic009G057500 Sobic001G106400 Sobic001G106400 Sobic001G052900--Sobic001G106400 Sobic006G096300 Sobic006G096300 Sobic001G052900--Sobic006G096300 Sobic009G041301 Sobic009G041301 Sobic001G052900--Sobic009G041301 Sobic004G225800 Sobic004G225800 Sobic001G052900--Sobic004G225800 Sobic009G199300 Sobic009G199300 Sobic001G052900--Sobic009G199300 Sobic004G341100 Sobic004G341100 Sobic001G052900--Sobic004G341100
Octagon: transcription factors


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