Gene annotation
Transcriptome id Sobic.001G052900.1
Synonym ATH2, TRX2, Sb01g004860, ATTRXH2, TRXH2, ATTRX2
Functional annotation thioredoxin, putative, expressed
UniProt C5WX30
Pfam PF00085
Panther DB PTHR10438 PTHR10438:SF243
NCBI CDD KOG0907; Thioredoxin
KEGG Orthology K03671; thioredoxin 1
Gene Ontology GO:0015035; protein disulfide oxidoreductase activity GO:0006662glycerol ether metabolic process


Orthologs (automatic annotation)
TAIR AT5G39950 : thioredoxin 2
RAP-DB (Rice) LOC_Os03g58630.1 : thioredoxin, putative, expressed
MaizeGDB (Corn) Zm00025a008599 , Zm00025a016548
Brachypodium KQK12653
Barley HORVU5Hr1G107170.1 , HORVU5Hr1G107170.2 , HORVU6Hr1G018190.1 , HORVU5Hr1G107210.1
Wheat TraesCS5D02G454800 , TraesCS5B02G452700 , TraesCS5A02G448200
Populus -


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cDNA sequences
Sobic.001G052900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G198700 expressed protein -
2 Sobic.007G182500 bZIP family transcription factor, putative, expressed -
3 Sobic.009G057500 ergosterol biosynthetic protein 28, putative, expressed -
4 Sobic.001G106400 serine esterase family protein, putative, expressed K10606: FANCL, E3 ubiquitin-protein ligase FANCL
5 Sobic.006G096300 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
6 Sobic.009G041301 - -
7 Sobic.004G225800 GEM, putative, expressed -
8 Sobic.009G199300 "domain confirmed by Pfam database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
9 Sobic.004G341100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBX70 - F-box domain containing protein, expressed -
10 Sobic.003G295000 DUF584 domain containing protein, putative, expressed -
11 Sobic.004G067900 expressed protein -
12 Sobic.002G083800 SNF7 domain containing protein, putative, expressed K12191: charged multivesicular body protein 2A
13 Sobic.004G102900 FUWA(Ortholog in rice:Chen 2015)(PubMedID : 31659879)@"encodes an NHL domain-containing protein regulating panicle architecture, grain shape and grain weight"(PubMedID : 26043067)@NHL repeat-containing protein, putative, expressed -
14 Sobic.002G240800 - -
15 Sobic.004G288100 HSPC171 protein, putative, expressed -
16 Sobic.002G393600 GDSL-like lipase/acylhydrolase, putative, expressed -
17 Sobic.002G240700 OsSub58 - Putative Subtilisin homologue, expressed -
18 Sobic.006G066600 DNA-binding protein S1FA, putative, expressed -
19 Sobic.003G324300 zinc finger C3HC4 type family protein, putative, expressed K10695: E3 ubiquitin-protein ligase RNF1/2
20 Sobic.007G034600 U box protein 8, putative, expressed -


Gene co-expression network
sample Sobic001G052900 Sobic001G052900 Sobic010G198700 Sobic010G198700 Sobic001G052900--Sobic010G198700 Sobic007G182500 Sobic007G182500 Sobic001G052900--Sobic007G182500 Sobic009G057500 Sobic009G057500 Sobic001G052900--Sobic009G057500 Sobic001G106400 Sobic001G106400 Sobic001G052900--Sobic001G106400 Sobic006G096300 Sobic006G096300 Sobic001G052900--Sobic006G096300 Sobic009G041301 Sobic009G041301 Sobic001G052900--Sobic009G041301 Sobic004G225800 Sobic004G225800 Sobic001G052900--Sobic004G225800 Sobic009G199300 Sobic009G199300 Sobic001G052900--Sobic009G199300 Sobic004G341100 Sobic004G341100 Sobic001G052900--Sobic004G341100 Sobic010G198700--Sobic009G041301 Sobic003G302466 Sobic003G302466 Sobic010G198700--Sobic003G302466 Sobic004G068000 Sobic004G068000 Sobic010G198700--Sobic004G068000 Sobic010G198700--Sobic001G052900 Sobic010G198700--Sobic009G199300 Sobic001G234000 Sobic001G234000 Sobic010G198700--Sobic001G234000 Sobic010G198700--Sobic007G182500 Sobic009G029900 Sobic009G029900 Sobic010G198700--Sobic009G029900 Sobic007G064400 Sobic007G064400 Sobic010G198700--Sobic007G064400 Sobic001G170500 Sobic001G170500 Sobic007G182500--Sobic001G170500 Sobic007G018000 Sobic007G018000 Sobic007G182500--Sobic007G018000 Sobic009G025100 Sobic009G025100 Sobic007G182500--Sobic009G025100 Sobic004G274500 Sobic004G274500 Sobic007G182500--Sobic004G274500 Sobic004G250600 Sobic004G250600 Sobic007G182500--Sobic004G250600 Sobic003G304500 Sobic003G304500 Sobic007G182500--Sobic003G304500 Sobic007G208200 Sobic007G208200 Sobic007G182500--Sobic007G208200 Sobic004G254400 Sobic004G254400 Sobic007G182500--Sobic004G254400 Sobic001G368900 Sobic001G368900 Sobic007G182500--Sobic001G368900 Sobic009G057500--Sobic001G052900 Sobic006G275600 Sobic006G275600 Sobic009G057500--Sobic006G275600 Sobic001G417800 Sobic001G417800 Sobic009G057500--Sobic001G417800 Sobic003G190900 Sobic003G190900 Sobic009G057500--Sobic003G190900 Sobic004G310900 Sobic004G310900 Sobic009G057500--Sobic004G310900 Sobic010G042800 Sobic010G042800 Sobic009G057500--Sobic010G042800 Sobic004G264700 Sobic004G264700 Sobic009G057500--Sobic004G264700 Sobic001G031400 Sobic001G031400 Sobic009G057500--Sobic001G031400 Sobic006G110300 Sobic006G110300 Sobic009G057500--Sobic006G110300 Sobic004G067900 Sobic004G067900 Sobic001G106400--Sobic004G067900 Sobic002G308400 Sobic002G308400 Sobic001G106400--Sobic002G308400 Sobic001G106400--Sobic006G096300 Sobic006G066600 Sobic006G066600 Sobic001G106400--Sobic006G066600 Sobic002G393600 Sobic002G393600 Sobic001G106400--Sobic002G393600 Sobic010G168200 Sobic010G168200 Sobic001G106400--Sobic010G168200 Sobic009G232800 Sobic009G232800 Sobic001G106400--Sobic009G232800 Sobic004G102900 Sobic004G102900 Sobic001G106400--Sobic004G102900 Sobic009G070200 Sobic009G070200 Sobic001G106400--Sobic009G070200 Sobic007G034600 Sobic007G034600 Sobic006G096300--Sobic007G034600 Sobic006G096300--Sobic004G067900 Sobic006G096300--Sobic001G106400 Sobic002G359900 Sobic002G359900 Sobic006G096300--Sobic002G359900 Sobic006G096300--Sobic004G102900 Sobic001G488200 Sobic001G488200 Sobic006G096300--Sobic001G488200 Sobic004G028800 Sobic004G028800 Sobic006G096300--Sobic004G028800 Sobic003G031200 Sobic003G031200 Sobic006G096300--Sobic003G031200 Sobic004G250900 Sobic004G250900 Sobic006G096300--Sobic004G250900 Sobic009G041301--Sobic004G068000 Sobic009G041301--Sobic001G234000 Sobic001G530400 Sobic001G530400 Sobic009G041301--Sobic001G530400 Sobic009G041301--Sobic009G029900 Sobic004G105300 Sobic004G105300 Sobic009G041301--Sobic004G105300 Sobic009G041301--Sobic003G302466 Sobic009G041301--Sobic010G198700 Sobic004G187200 Sobic004G187200 Sobic009G041301--Sobic004G187200 Sobic004G090300 Sobic004G090300 Sobic009G041301--Sobic004G090300 Sobic002G419500 Sobic002G419500 Sobic004G225800--Sobic002G419500 Sobic004G225800--Sobic001G488200 Sobic006G244500 Sobic006G244500 Sobic004G225800--Sobic006G244500 Sobic003G062200 Sobic003G062200 Sobic004G225800--Sobic003G062200 Sobic004G225800--Sobic004G067900 Sobic004G225800--Sobic002G393600 Sobic002G290500 Sobic002G290500 Sobic004G225800--Sobic002G290500 Sobic004G225800--Sobic004G028800 Sobic007G097700 Sobic007G097700 Sobic004G225800--Sobic007G097700 Sobic007G194100 Sobic007G194100 Sobic009G199300--Sobic007G194100 Sobic010G209300 Sobic010G209300 Sobic009G199300--Sobic010G209300 Sobic007G122932 Sobic007G122932 Sobic009G199300--Sobic007G122932 Sobic007G123000 Sobic007G123000 Sobic009G199300--Sobic007G123000 Sobic007G147300 Sobic007G147300 Sobic009G199300--Sobic007G147300 Sobic009G021300 Sobic009G021300 Sobic009G199300--Sobic009G021300 Sobic002G408700 Sobic002G408700 Sobic009G199300--Sobic002G408700 Sobic005G075000 Sobic005G075000 Sobic009G199300--Sobic005G075000 Sobic005G001500 Sobic005G001500 Sobic009G199300--Sobic005G001500 Sobic004G026400 Sobic004G026400 Sobic004G341100--Sobic004G026400 Sobic003G150000 Sobic003G150000 Sobic004G341100--Sobic003G150000 Sobic004G340900 Sobic004G340900 Sobic004G341100--Sobic004G340900 Sobic002G196350 Sobic002G196350 Sobic004G341100--Sobic002G196350 Sobic004G351500 Sobic004G351500 Sobic004G341100--Sobic004G351500 Sobic002G040600 Sobic002G040600 Sobic004G341100--Sobic002G040600 Sobic008G097401 Sobic008G097401 Sobic004G341100--Sobic008G097401 Sobic003G264600 Sobic003G264600 Sobic004G341100--Sobic003G264600 Sobic002G378401 Sobic002G378401 Sobic004G341100--Sobic002G378401
Octagon: transcription factors


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