Gene annotation
Transcriptome id Sobic.004G341100.2
Synonym PP2-B1, AtPP2-B1, Sb04g036860
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
OsFBX70 - F-box domain containing protein, expressed
UniProt A0A1Z5RQ87
Pfam PF14299
Panther DB PTHR32278 PTHR32278:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G02230 : phloem protein 2-B1
RAP-DB (Rice) LOC_Os02g56840.1 : OsFBX70 - F-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a022559
Brachypodium -
Barley HORVU6Hr1G090010.2 , HORVU6Hr1G090000.1 , HORVU6Hr1G090000.2 , HORVU6Hr1G090000.5 , HORVU6Hr1G090000.4
Wheat TraesCS6D02G369100 , TraesCS6D02G369100 , TraesCS6B02G423500 , TraesCS6A02G384000 , TraesCS6A02G384000 , TraesCS6D02G369200 , TraesCS6D02G368900 , TraesCS6A02G383900 , TraesCS6B02G423400 , TraesCS6A02G384100 , TraesCS6D02G369000
Populus -


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cDNA sequences
Sobic.004G341100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G026400 expressed protein -
2 Sobic.003G150000 split hand/foot malformation type 1, putative, expressed K10881: SHFM1, DSS1, 26 proteasome complex subunit DSS1
3 Sobic.004G340900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBX70 - F-box domain containing protein, expressed -
4 Sobic.002G196350 - K14011: UBXN6, UBX domain-containing protein 6
5 Sobic.004G351500 - -
6 Sobic.002G040600 zinc finger, C3HC4 type domain containing protein, expressed K19043: E3 ubiquitin-protein ligase RHF
7 Sobic.008G097401 - -
8 Sobic.003G264600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
9 Sobic.002G378401 - -
10 Sobic.001G432000 LYR motif containing protein, putative, expressed -
11 Sobic.008G185400 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
12 Sobic.002G327300 expressed protein -
13 Sobic.010G213400 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
14 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
15 Sobic.004G203200 BTBZ4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed -
16 Sobic.003G285800 ubiquitin domain-containing protein 1, putative, expressed -
17 Sobic.006G136800 "shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
18 Sobic.004G306200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
19 Sobic.009G232900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
20 Sobic.001G117500 AT hook-containing DNA-binding protein, putative, expressed -


Gene co-expression network
sample Sobic004G341100 Sobic004G341100 Sobic004G026400 Sobic004G026400 Sobic004G341100--Sobic004G026400 Sobic003G150000 Sobic003G150000 Sobic004G341100--Sobic003G150000 Sobic004G340900 Sobic004G340900 Sobic004G341100--Sobic004G340900 Sobic002G196350 Sobic002G196350 Sobic004G341100--Sobic002G196350 Sobic004G351500 Sobic004G351500 Sobic004G341100--Sobic004G351500 Sobic002G040600 Sobic002G040600 Sobic004G341100--Sobic002G040600 Sobic008G097401 Sobic008G097401 Sobic004G341100--Sobic008G097401 Sobic003G264600 Sobic003G264600 Sobic004G341100--Sobic003G264600 Sobic002G378401 Sobic002G378401 Sobic004G341100--Sobic002G378401 Sobic001G084900 Sobic001G084900 Sobic004G026400--Sobic001G084900 Sobic002G187500 Sobic002G187500 Sobic004G026400--Sobic002G187500 Sobic001G432000 Sobic001G432000 Sobic004G026400--Sobic001G432000 Sobic001G445800 Sobic001G445800 Sobic004G026400--Sobic001G445800 Sobic004G026400--Sobic003G150000 Sobic003G285800 Sobic003G285800 Sobic004G026400--Sobic003G285800 Sobic001G225700 Sobic001G225700 Sobic004G026400--Sobic001G225700 Sobic010G009300 Sobic010G009300 Sobic004G026400--Sobic010G009300 Sobic003G072300 Sobic003G072300 Sobic004G026400--Sobic003G072300 Sobic005G110800 Sobic005G110800 Sobic003G150000--Sobic005G110800 Sobic010G204500 Sobic010G204500 Sobic003G150000--Sobic010G204500 Sobic003G249700 Sobic003G249700 Sobic003G150000--Sobic003G249700 Sobic001G493001 Sobic001G493001 Sobic003G150000--Sobic001G493001 Sobic001G403500 Sobic001G403500 Sobic003G150000--Sobic001G403500 Sobic001G054900 Sobic001G054900 Sobic003G150000--Sobic001G054900 Sobic009G050300 Sobic009G050300 Sobic003G150000--Sobic009G050300 Sobic005G019700 Sobic005G019700 Sobic003G150000--Sobic005G019700 Sobic009G163800 Sobic009G163800 Sobic003G150000--Sobic009G163800 Sobic009G159400 Sobic009G159400 Sobic004G340900--Sobic009G159400 Sobic002G017800 Sobic002G017800 Sobic004G340900--Sobic002G017800 Sobic009G077800 Sobic009G077800 Sobic004G340900--Sobic009G077800 Sobic010G259600 Sobic010G259600 Sobic004G340900--Sobic010G259600 Sobic001G389000 Sobic001G389000 Sobic004G340900--Sobic001G389000 Sobic005G018700 Sobic005G018700 Sobic004G340900--Sobic005G018700 Sobic004G321300 Sobic004G321300 Sobic004G340900--Sobic004G321300 Sobic003G084400 Sobic003G084400 Sobic004G340900--Sobic003G084400 Sobic005G196800 Sobic005G196800 Sobic004G340900--Sobic005G196800 Sobic010G213400 Sobic010G213400 Sobic002G196350--Sobic010G213400 Sobic006G062800 Sobic006G062800 Sobic002G196350--Sobic006G062800 Sobic004G026200 Sobic004G026200 Sobic002G196350--Sobic004G026200 Sobic003G063200 Sobic003G063200 Sobic002G196350--Sobic003G063200 Sobic005G028700 Sobic005G028700 Sobic002G196350--Sobic005G028700 Sobic008G185400 Sobic008G185400 Sobic002G196350--Sobic008G185400 Sobic009G129000 Sobic009G129000 Sobic002G196350--Sobic009G129000 Sobic002G046100 Sobic002G046100 Sobic002G196350--Sobic002G046100 Sobic009G033700 Sobic009G033700 Sobic002G196350--Sobic009G033700 Sobic001G364500 Sobic001G364500 Sobic004G351500--Sobic001G364500 Sobic001G087900 Sobic001G087900 Sobic004G351500--Sobic001G087900 Sobic002G155500 Sobic002G155500 Sobic004G351500--Sobic002G155500 Sobic001G034700 Sobic001G034700 Sobic004G351500--Sobic001G034700 Sobic009G062000 Sobic009G062000 Sobic004G351500--Sobic009G062000 Sobic004G225500 Sobic004G225500 Sobic004G351500--Sobic004G225500 Sobic001G536500 Sobic001G536500 Sobic004G351500--Sobic001G536500 Sobic002G078400 Sobic002G078400 Sobic004G351500--Sobic002G078400 Sobic008G129400 Sobic008G129400 Sobic004G351500--Sobic008G129400 Sobic004G212300 Sobic004G212300 Sobic002G040600--Sobic004G212300 Sobic001G516600 Sobic001G516600 Sobic002G040600--Sobic001G516600 Sobic004G262500 Sobic004G262500 Sobic002G040600--Sobic004G262500 Sobic010G195500 Sobic010G195500 Sobic002G040600--Sobic010G195500 Sobic007G186100 Sobic007G186100 Sobic002G040600--Sobic007G186100 Sobic003G037800 Sobic003G037800 Sobic002G040600--Sobic003G037800 Sobic003G319500 Sobic003G319500 Sobic002G040600--Sobic003G319500 Sobic005G168800 Sobic005G168800 Sobic002G040600--Sobic005G168800 Sobic002G379200 Sobic002G379200 Sobic002G040600--Sobic002G379200 Sobic002G296300 Sobic002G296300 Sobic008G097401--Sobic002G296300 Sobic009G198500 Sobic009G198500 Sobic008G097401--Sobic009G198500 Sobic001G078500 Sobic001G078500 Sobic008G097401--Sobic001G078500 Sobic010G121300 Sobic010G121300 Sobic008G097401--Sobic010G121300 Sobic004G339200 Sobic004G339200 Sobic008G097401--Sobic004G339200 Sobic001G403700 Sobic001G403700 Sobic008G097401--Sobic001G403700 Sobic004G300900 Sobic004G300900 Sobic008G097401--Sobic004G300900 Sobic008G097401--Sobic002G078400 Sobic003G124800 Sobic003G124800 Sobic008G097401--Sobic003G124800 Sobic003G408100 Sobic003G408100 Sobic003G264600--Sobic003G408100 Sobic010G063801 Sobic010G063801 Sobic003G264600--Sobic010G063801 Sobic001G318500 Sobic001G318500 Sobic003G264600--Sobic001G318500 Sobic003G264600--Sobic001G054900 Sobic002G327300 Sobic002G327300 Sobic003G264600--Sobic002G327300 Sobic003G264600--Sobic004G340900 Sobic003G228200 Sobic003G228200 Sobic003G264600--Sobic003G228200 Sobic006G116700 Sobic006G116700 Sobic003G264600--Sobic006G116700 Sobic006G141700 Sobic006G141700 Sobic003G264600--Sobic006G141700 Sobic003G127700 Sobic003G127700 Sobic002G378401--Sobic003G127700 Sobic003G024500 Sobic003G024500 Sobic002G378401--Sobic003G024500 Sobic009G149800 Sobic009G149800 Sobic002G378401--Sobic009G149800 Sobic007G068000 Sobic007G068000 Sobic002G378401--Sobic007G068000 Sobic002G116200 Sobic002G116200 Sobic002G378401--Sobic002G116200 Sobic001G233800 Sobic001G233800 Sobic002G378401--Sobic001G233800 Sobic002G378401--Sobic003G150000 Sobic006G231700 Sobic006G231700 Sobic002G378401--Sobic006G231700 Sobic002G378401--Sobic001G225700
Octagon: transcription factors


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