Gene annotation
Transcriptome id Sobic.001G117500.1
Synonym HMGA, Sb01g010370
Functional annotation AT hook-containing DNA-binding protein, putative, expressed
UniProt A0A1B6QIJ7
Pfam PF00538
Panther DB PTHR11467 PTHR11467:SF39
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006334; nucleosome assembly GO:0005634nucleus GO:0003677DNA binding GO:0000786nucleosome


Orthologs (automatic annotation)
TAIR AT1G14900 : high mobility group A
RAP-DB (Rice) LOC_Os03g50355.1 : AT hook-containing DNA-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a007841 , Zm00025a016996
Brachypodium KQK13615
Barley HORVU4Hr1G007510.1 , HORVU4Hr1G007510.2
Wheat TraesCS4A02G268000 , TraesCS4B02G046400 , TraesCS4D02G045700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G117500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G061101 - -
2 Sobic.004G352900 expressed protein -
3 Sobic.004G341100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBX70 - F-box domain containing protein, expressed -
4 Sobic.002G373001 - -
5 Sobic.009G065300 expressed protein -
6 Sobic.010G066300 OsRCI2-8 - Putative low temperature and salt responsive protein, expressed -
7 Sobic.002G254650 - -
8 Sobic.003G150000 split hand/foot malformation type 1, putative, expressed K10881: SHFM1, DSS1, 26 proteasome complex subunit DSS1
9 Sobic.004G311300 expressed protein -
10 Sobic.005G228900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
11 Sobic.001G047700 expressed protein -
12 Sobic.001G536500 expressed protein -
13 Sobic.001G389400 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed K17278: membrane-associated progesterone receptor component
14 Sobic.002G427900 wound-induced protein WI12, putative, expressed -
15 Sobic.005G142300 expressed protein K19042: E3 ubiquitin-protein ligase BOI and related proteins
16 Sobic.002G205300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
17 Sobic.004G247200 erwinia induced protein 2, putative, expressed -
18 Sobic.010G054200 peptidase, T1 family, putative, expressed K02728: 20S proteasome subunit alpha 3
19 Sobic.001G125900 lipoxygenase, putative, expressed K15718: linoleate 9S-lipoxygenase
20 Sobic.010G171501 - -


Gene co-expression network
sample Sobic001G117500 Sobic001G117500 Sobic001G061101 Sobic001G061101 Sobic001G117500--Sobic001G061101 Sobic004G352900 Sobic004G352900 Sobic001G117500--Sobic004G352900 Sobic004G341100 Sobic004G341100 Sobic001G117500--Sobic004G341100 Sobic002G373001 Sobic002G373001 Sobic001G117500--Sobic002G373001 Sobic009G065300 Sobic009G065300 Sobic001G117500--Sobic009G065300 Sobic010G066300 Sobic010G066300 Sobic001G117500--Sobic010G066300 Sobic002G254650 Sobic002G254650 Sobic001G117500--Sobic002G254650 Sobic003G150000 Sobic003G150000 Sobic001G117500--Sobic003G150000 Sobic004G311300 Sobic004G311300 Sobic001G117500--Sobic004G311300 Sobic001G061101--Sobic004G311300 Sobic006G246100 Sobic006G246100 Sobic001G061101--Sobic006G246100 Sobic001G061101--Sobic009G065300 Sobic009G121900 Sobic009G121900 Sobic001G061101--Sobic009G121900 Sobic005G080200 Sobic005G080200 Sobic001G061101--Sobic005G080200 Sobic001G061101--Sobic001G117500 Sobic001G432700 Sobic001G432700 Sobic001G061101--Sobic001G432700 Sobic004G010300 Sobic004G010300 Sobic001G061101--Sobic004G010300 Sobic001G536500 Sobic001G536500 Sobic001G061101--Sobic001G536500 Sobic002G427900 Sobic002G427900 Sobic004G352900--Sobic002G427900 Sobic009G156300 Sobic009G156300 Sobic004G352900--Sobic009G156300 Sobic004G014000 Sobic004G014000 Sobic004G352900--Sobic004G014000 Sobic004G352900--Sobic010G066300 Sobic004G352900--Sobic002G254650 Sobic004G352900--Sobic001G536500 Sobic002G117200 Sobic002G117200 Sobic004G352900--Sobic002G117200 Sobic010G029400 Sobic010G029400 Sobic004G352900--Sobic010G029400 Sobic009G131100 Sobic009G131100 Sobic004G352900--Sobic009G131100 Sobic004G026400 Sobic004G026400 Sobic004G341100--Sobic004G026400 Sobic004G341100--Sobic003G150000 Sobic004G340900 Sobic004G340900 Sobic004G341100--Sobic004G340900 Sobic002G196350 Sobic002G196350 Sobic004G341100--Sobic002G196350 Sobic004G351500 Sobic004G351500 Sobic004G341100--Sobic004G351500 Sobic002G040600 Sobic002G040600 Sobic004G341100--Sobic002G040600 Sobic008G097401 Sobic008G097401 Sobic004G341100--Sobic008G097401 Sobic003G264600 Sobic003G264600 Sobic004G341100--Sobic003G264600 Sobic002G378401 Sobic002G378401 Sobic004G341100--Sobic002G378401 Sobic001G449700 Sobic001G449700 Sobic002G373001--Sobic001G449700 Sobic002G034500 Sobic002G034500 Sobic002G373001--Sobic002G034500 Sobic003G021500 Sobic003G021500 Sobic002G373001--Sobic003G021500 Sobic002G319500 Sobic002G319500 Sobic002G373001--Sobic002G319500 Sobic003G102200 Sobic003G102200 Sobic002G373001--Sobic003G102200 Sobic002G070200 Sobic002G070200 Sobic002G373001--Sobic002G070200 Sobic002G082600 Sobic002G082600 Sobic002G373001--Sobic002G082600 Sobic002G333400 Sobic002G333400 Sobic002G373001--Sobic002G333400 Sobic004G095600 Sobic004G095600 Sobic002G373001--Sobic004G095600 Sobic002G327300 Sobic002G327300 Sobic009G065300--Sobic002G327300 Sobic001G234800 Sobic001G234800 Sobic009G065300--Sobic001G234800 Sobic002G327100 Sobic002G327100 Sobic009G065300--Sobic002G327100 Sobic003G228200 Sobic003G228200 Sobic009G065300--Sobic003G228200 Sobic003G416300 Sobic003G416300 Sobic009G065300--Sobic003G416300 Sobic003G037500 Sobic003G037500 Sobic009G065300--Sobic003G037500 Sobic007G127100 Sobic007G127100 Sobic009G065300--Sobic007G127100 Sobic001G318500 Sobic001G318500 Sobic009G065300--Sobic001G318500 Sobic002G302500 Sobic002G302500 Sobic009G065300--Sobic002G302500 Sobic010G066300--Sobic002G427900 Sobic010G066300--Sobic004G352900 Sobic010G066300--Sobic009G156300 Sobic010G021100 Sobic010G021100 Sobic010G066300--Sobic010G021100 Sobic001G285000 Sobic001G285000 Sobic010G066300--Sobic001G285000 Sobic010G045833 Sobic010G045833 Sobic010G066300--Sobic010G045833 Sobic010G066300--Sobic002G254650 Sobic001G526900 Sobic001G526900 Sobic010G066300--Sobic001G526900 Sobic003G317200 Sobic003G317200 Sobic010G066300--Sobic003G317200 Sobic002G254650--Sobic004G352900 Sobic008G132800 Sobic008G132800 Sobic002G254650--Sobic008G132800 Sobic010G065400 Sobic010G065400 Sobic002G254650--Sobic010G065400 Sobic004G012800 Sobic004G012800 Sobic002G254650--Sobic004G012800 Sobic010G054200 Sobic010G054200 Sobic002G254650--Sobic010G054200 Sobic002G254650--Sobic010G029400 Sobic005G157200 Sobic005G157200 Sobic002G254650--Sobic005G157200 Sobic010G099200 Sobic010G099200 Sobic002G254650--Sobic010G099200 Sobic006G052400 Sobic006G052400 Sobic002G254650--Sobic006G052400 Sobic005G110800 Sobic005G110800 Sobic003G150000--Sobic005G110800 Sobic010G204500 Sobic010G204500 Sobic003G150000--Sobic010G204500 Sobic003G249700 Sobic003G249700 Sobic003G150000--Sobic003G249700 Sobic001G493001 Sobic001G493001 Sobic003G150000--Sobic001G493001 Sobic001G403500 Sobic001G403500 Sobic003G150000--Sobic001G403500 Sobic001G054900 Sobic001G054900 Sobic003G150000--Sobic001G054900 Sobic009G050300 Sobic009G050300 Sobic003G150000--Sobic009G050300 Sobic005G019700 Sobic005G019700 Sobic003G150000--Sobic005G019700 Sobic009G163800 Sobic009G163800 Sobic003G150000--Sobic009G163800 Sobic004G311300--Sobic001G536500 Sobic003G135700 Sobic003G135700 Sobic004G311300--Sobic003G135700 Sobic004G311300--Sobic004G352900 Sobic004G311300--Sobic001G061101 Sobic010G194900 Sobic010G194900 Sobic004G311300--Sobic010G194900 Sobic006G010600 Sobic006G010600 Sobic004G311300--Sobic006G010600 Sobic003G110200 Sobic003G110200 Sobic004G311300--Sobic003G110200 Sobic004G311300--Sobic005G080200 Sobic003G268200 Sobic003G268200 Sobic004G311300--Sobic003G268200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.