Gene annotation
Transcriptome id Sobic.001G125900.1
Synonym Sb01g011050, LOX5
Functional annotation lipoxygenase, putative, expressed
UniProt C5WNU9 , C9DHL2
Pfam PF01477 PF00305
Panther DB PTHR11771 PTHR11771:SF49
NCBI CDD -
KEGG Orthology K15718; linoleate 9S-lipoxygenase
Gene Ontology GO:0005515; protein binding GO:0016702oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen


Orthologs (automatic annotation)
TAIR AT3G22400 : PLAT/LH2 domain-containing lipoxygenase family protein
RAP-DB (Rice) LOC_Os03g52860.1 : lipoxygenase, putative, expressed
MaizeGDB (Corn) Zm00025a026458 , Zm00025a026461 , Zm00025a007723 , Zm00025a007727 , Zm00025a007726 , Zm00025a007722 , Zm00025a017057
Brachypodium KQK13662 , PNT74274 , KQK13306 , KQK13307
Barley HORVU5Hr1G054200.1 , HORVU5Hr1G093770.11 , HORVU5Hr1G093770.10 , HORVU5Hr1G093770.13 , HORVU5Hr1G093770.12 , HORVU4Hr1G005920.15 , HORVU4Hr1G005920.16 , HORVU4Hr1G005920.17 , HORVU4Hr1G005920.11 , HORVU4Hr1G005920.12 , HORVU4Hr1G005920.18 , HORVU4Hr1G005920.19 , HORVU5Hr1G093700.18 , HORVU5Hr1G093700.19 , HORVU5Hr1G093700.16 , HORVU5Hr1G093700.17 , HORVU5Hr1G093700.14 , HORVU5Hr1G093700.15 , HORVU5Hr1G093700.12 , HORVU5Hr1G093700.13 , HORVU5Hr1G093700.10 , HORVU5Hr1G093700.11 , HORVU4Hr1G005920.29 , HORVU4Hr1G005920.28 , HORVU4Hr1G005920.21 , HORVU4Hr1G005920.20 , HORVU4Hr1G005920.23 , HORVU4Hr1G005920.22 , HORVU4Hr1G005920.25 , HORVU4Hr1G005920.24 , HORVU4Hr1G005920.27 , HORVU4Hr1G005920.26 , HORVU4Hr1G005920.38 , HORVU4Hr1G005920.39 , HORVU4Hr1G005920.36 , HORVU4Hr1G005920.37 , HORVU4Hr1G005920.34 , HORVU4Hr1G005920.35 , HORVU4Hr1G005920.32 , HORVU4Hr1G005920.33 , HORVU4Hr1G005920.30 , HORVU4Hr1G005920.31 , HORVU5Hr1G093770.9 , HORVU5Hr1G093770.8 , HORVU5Hr1G093770.5 , HORVU5Hr1G093700.5 , HORVU5Hr1G093770.7 , HORVU5Hr1G093770.6 , HORVU5Hr1G093770.3 , HORVU5Hr1G093770.2 , HORVU4Hr1G005920.49 , HORVU4Hr1G005920.48 , HORVU4Hr1G005920.43 , HORVU4Hr1G005920.42 , HORVU4Hr1G005920.41 , HORVU4Hr1G005920.40 , HORVU4Hr1G005920.47 , HORVU4Hr1G005920.46 , HORVU4Hr1G005920.45 , HORVU4Hr1G005920.44 , HORVU5Hr1G093700.8 , HORVU5Hr1G093700.9 , HORVU5Hr1G093700.4 , HORVU5Hr1G093770.4 , HORVU5Hr1G093700.6 , HORVU5Hr1G093700.7 , HORVU5Hr1G093770.1 , HORVU5Hr1G093700.1 , HORVU5Hr1G093700.2 , HORVU5Hr1G093700.3 , HORVU5Hr1G117110.2 , HORVU5Hr1G117110.1 , HORVU4Hr1G005920.58 , HORVU4Hr1G005920.59 , HORVU4Hr1G005920.50 , HORVU4Hr1G005920.51 , HORVU4Hr1G005920.52 , HORVU4Hr1G005920.53 , HORVU4Hr1G005920.54 , HORVU4Hr1G005920.55 , HORVU4Hr1G005920.56 , HORVU4Hr1G005920.57 , HORVU4Hr1G005920.8 , HORVU4Hr1G005920.9 , HORVU4Hr1G005920.6 , HORVU4Hr1G005920.7 , HORVU4Hr1G005920.5 , HORVU4Hr1G005920.2 , HORVU4Hr1G005920.3 , HORVU4Hr1G005920.1 , HORVU5Hr1G093700.24 , HORVU5Hr1G093700.23 , HORVU5Hr1G093700.22 , HORVU5Hr1G093700.21 , HORVU5Hr1G093700.20 , HORVU4Hr1G005920.65 , HORVU4Hr1G005920.64 , HORVU4Hr1G005920.61 , HORVU4Hr1G005920.60 , HORVU4Hr1G005920.63 , HORVU4Hr1G005920.62
Wheat TraesCS4D02G035100 , TraesCS4D02G035100 , TraesCS5A02G378900 , TraesCS5D02G388700 , TraesCS5D02G388800 , TraesCS5D02G388800 , TraesCS3B02G605700 , TraesCS4B02G037900 , TraesCS4B02G037900 , TraesCS5B02G382600 , TraesCS4D02G035200 , TraesCS5D02G513100 , TraesCS4A02G359800 , TraesCS4A02G359800 , TraesCS5A02G378800 , TraesCS5A02G378800 , TraesCS5A02G378700 , TraesCS4A02G275800 , TraesCS4B02G037700 , TraesCS6B02G395700 , TraesCS5A02G379000 , TraesCS4A02G275900 , TraesCS4B02G037800 , TraesCS5B02G382300 , TraesCS4B02G037700 , TraesCS4B02G037700
Populus -


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cDNA sequences
Sobic.001G125900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G061101 - -
2 Sobic.003G360200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@homeobox domain containing protein, expressed -
3 Sobic.004G302200 "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsSAUR11 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
4 Sobic.007G127100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
5 Sobic.010G094800 pro-resilin precursor, putative, expressed -
6 Sobic.007G157900 gibberellin receptor GID1L2, putative, expressed -
7 Sobic.006G009000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
8 Sobic.009G121900 Annexin arabidopsis 4(PubMedID : 26320239)@annexin, putative, expressed -
9 Sobic.010G171501 - -
10 Sobic.003G325500 ICE-like protease p20 domain containing protein, putative, expressed -
11 Sobic.002G307600 GTPase activating protein, putative, expressed -
12 Sobic.003G416300 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
13 Sobic.001G284600 xyloglucan endotransglucosylase/hydrolase 29(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
14 Sobic.006G103900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@wound/stress protein, putative, expressed -
15 Sobic.009G062000 ribosomal protein L51, putative, expressed K03946: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 2
16 Sobic.001G432700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.001G226800 zinc finger family protein, putative, expressed -
18 Sobic.004G010300 glycerol-3-phosphate acyltransferase, putative, expressed K13508: glycerol-3-phosphate acyltransferase
19 Sobic.004G311300 expressed protein -
20 Sobic.003G003000 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1


Gene co-expression network
sample Sobic001G125900 Sobic001G125900 Sobic001G061101 Sobic001G061101 Sobic001G125900--Sobic001G061101 Sobic003G360200 Sobic003G360200 Sobic001G125900--Sobic003G360200 Sobic004G302200 Sobic004G302200 Sobic001G125900--Sobic004G302200 Sobic007G127100 Sobic007G127100 Sobic001G125900--Sobic007G127100 Sobic010G094800 Sobic010G094800 Sobic001G125900--Sobic010G094800 Sobic007G157900 Sobic007G157900 Sobic001G125900--Sobic007G157900 Sobic006G009000 Sobic006G009000 Sobic001G125900--Sobic006G009000 Sobic009G121900 Sobic009G121900 Sobic001G125900--Sobic009G121900 Sobic010G171501 Sobic010G171501 Sobic001G125900--Sobic010G171501 Sobic004G311300 Sobic004G311300 Sobic001G061101--Sobic004G311300 Sobic006G246100 Sobic006G246100 Sobic001G061101--Sobic006G246100 Sobic009G065300 Sobic009G065300 Sobic001G061101--Sobic009G065300 Sobic001G061101--Sobic009G121900 Sobic005G080200 Sobic005G080200 Sobic001G061101--Sobic005G080200 Sobic001G117500 Sobic001G117500 Sobic001G061101--Sobic001G117500 Sobic001G432700 Sobic001G432700 Sobic001G061101--Sobic001G432700 Sobic004G010300 Sobic004G010300 Sobic001G061101--Sobic004G010300 Sobic001G536500 Sobic001G536500 Sobic001G061101--Sobic001G536500 Sobic003G360200--Sobic007G127100 Sobic003G360200--Sobic006G009000 Sobic003G360200--Sobic009G065300 Sobic003G416300 Sobic003G416300 Sobic003G360200--Sobic003G416300 Sobic003G360200--Sobic001G432700 Sobic003G360200--Sobic006G246100 Sobic002G327300 Sobic002G327300 Sobic003G360200--Sobic002G327300 Sobic007G115500 Sobic007G115500 Sobic003G360200--Sobic007G115500 Sobic003G135700 Sobic003G135700 Sobic003G360200--Sobic003G135700 Sobic010G136000 Sobic010G136000 Sobic004G302200--Sobic010G136000 Sobic003G320800 Sobic003G320800 Sobic004G302200--Sobic003G320800 Sobic010G268400 Sobic010G268400 Sobic004G302200--Sobic010G268400 Sobic004G302200--Sobic001G432700 Sobic004G302200--Sobic003G135700 Sobic002G407100 Sobic002G407100 Sobic004G302200--Sobic002G407100 Sobic002G319500 Sobic002G319500 Sobic004G302200--Sobic002G319500 Sobic002G373001 Sobic002G373001 Sobic004G302200--Sobic002G373001 Sobic004G302200--Sobic009G065300 Sobic007G127100--Sobic003G416300 Sobic007G127100--Sobic002G327300 Sobic010G008400 Sobic010G008400 Sobic007G127100--Sobic010G008400 Sobic008G128900 Sobic008G128900 Sobic007G127100--Sobic008G128900 Sobic007G127100--Sobic009G065300 Sobic007G127100--Sobic001G432700 Sobic007G127100--Sobic002G407100 Sobic004G064400 Sobic004G064400 Sobic007G127100--Sobic004G064400 Sobic007G127100--Sobic009G121900 Sobic003G003000 Sobic003G003000 Sobic010G094800--Sobic003G003000 Sobic004G018400 Sobic004G018400 Sobic010G094800--Sobic004G018400 Sobic010G094800--Sobic001G125900 Sobic006G281200 Sobic006G281200 Sobic010G094800--Sobic006G281200 Sobic002G241500 Sobic002G241500 Sobic010G094800--Sobic002G241500 Sobic003G325500 Sobic003G325500 Sobic010G094800--Sobic003G325500 Sobic006G103900 Sobic006G103900 Sobic010G094800--Sobic006G103900 Sobic001G128100 Sobic001G128100 Sobic010G094800--Sobic001G128100 Sobic001G081400 Sobic001G081400 Sobic010G094800--Sobic001G081400 Sobic009G238900 Sobic009G238900 Sobic007G157900--Sobic009G238900 Sobic004G351500 Sobic004G351500 Sobic007G157900--Sobic004G351500 Sobic010G194100 Sobic010G194100 Sobic007G157900--Sobic010G194100 Sobic002G232700 Sobic002G232700 Sobic007G157900--Sobic002G232700 Sobic009G054100 Sobic009G054100 Sobic007G157900--Sobic009G054100 Sobic003G417100 Sobic003G417100 Sobic007G157900--Sobic003G417100 Sobic004G062500 Sobic004G062500 Sobic007G157900--Sobic004G062500 Sobic004G262500 Sobic004G262500 Sobic007G157900--Sobic004G262500 Sobic007G157900--Sobic007G127100 Sobic006G009100 Sobic006G009100 Sobic006G009000--Sobic006G009100 Sobic010G192900 Sobic010G192900 Sobic006G009000--Sobic010G192900 Sobic002G327100 Sobic002G327100 Sobic006G009000--Sobic002G327100 Sobic006G009000--Sobic009G065300 Sobic006G255400 Sobic006G255400 Sobic006G009000--Sobic006G255400 Sobic006G009000--Sobic007G127100 Sobic006G050800 Sobic006G050800 Sobic006G009000--Sobic006G050800 Sobic006G068800 Sobic006G068800 Sobic006G009000--Sobic006G068800 Sobic006G009000--Sobic003G360200 Sobic009G121900--Sobic002G407100 Sobic009G121900--Sobic007G127100 Sobic009G121900--Sobic004G064400 Sobic009G121900--Sobic010G008400 Sobic009G121900--Sobic002G327300 Sobic009G121900--Sobic009G065300 Sobic003G110200 Sobic003G110200 Sobic009G121900--Sobic003G110200 Sobic009G121900--Sobic001G432700 Sobic003G376100 Sobic003G376100 Sobic009G121900--Sobic003G376100 Sobic009G131100 Sobic009G131100 Sobic010G171501--Sobic009G131100 Sobic010G171501--Sobic001G536500 Sobic005G127100 Sobic005G127100 Sobic010G171501--Sobic005G127100 Sobic010G171501--Sobic003G003000 Sobic001G198200 Sobic001G198200 Sobic010G171501--Sobic001G198200 Sobic010G171501--Sobic004G311300 Sobic006G108600 Sobic006G108600 Sobic010G171501--Sobic006G108600 Sobic010G171501--Sobic005G080200 Sobic010G171501--Sobic001G081400
Octagon: transcription factors


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