Gene annotation
Transcriptome id Sobic.001G284600.1
Synonym XTH27, ATXTH27, Sb01g027960, EXGT-A3
Functional annotation xyloglucan endotransglucosylase/hydrolase 29 (PubMedID : 26465154)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
glycosyl hydrolases family 16, putative, expressed
UniProt C5WQP4
Pfam PF06955 PF00722
Panther DB PTHR31062 PTHR31062:SF41
NCBI CDD -
KEGG Orthology K08235; xyloglucan:xyloglucosyl transferase
Gene Ontology GO:0016762; xyloglucan:xyloglucosyl transferase activity GO:0006073cellular glucan metabolic process GO:0005618cell wall GO:0005975carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT2G01850 : endoxyloglucan transferase A3
RAP-DB (Rice) LOC_Os10g42670.1 : glycosyl hydrolases family 16, putative, expressed
MaizeGDB (Corn) Zm00025a021635 , Zm00025a003531
Brachypodium KQJ97938 , PNT64517 , KQK00866 , KQJ90139
Barley HORVU6Hr1G067470.6 , HORVU6Hr1G067470.7 , HORVU6Hr1G067470.4 , HORVU6Hr1G067470.2 , HORVU6Hr1G067470.3 , HORVU6Hr1G067470.1 , HORVU5Hr1G060340.6 , HORVU5Hr1G060340.7 , HORVU5Hr1G060340.4 , HORVU5Hr1G060340.5 , HORVU5Hr1G060340.3 , HORVU5Hr1G060340.1
Wheat TraesCS1D02G199300 , TraesCS5B02G202000 , TraesCS6A02G266100 , TraesCS5A02G203300 , TraesCS6D02G248500
Populus -


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cDNA sequences
Sobic.001G284600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G028400 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
2 Sobic.007G157900 gibberellin receptor GID1L2, putative, expressed -
3 Sobic.005G168800 DJ-1 family protein, putative, expressed K18881: D-lactate dehydratase
4 Sobic.003G050200 embryo-specific 3, putative, expressed -
5 Sobic.003G416300 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
6 Sobic.001G240500 flavoprotein wrbA, putative, expressed K03809: NAD(P)H dehydrogenase (quinone)
7 Sobic.004G351500 - -
8 Sobic.009G062000 ribosomal protein L51, putative, expressed K03946: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 2
9 Sobic.008G128900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
10 Sobic.007G127100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
11 Sobic.007G178900 CXE carboxylesterase, putative, expressed -
12 Sobic.001G494000 Expressed in older stem(PubMedID : 28649278)@homeodomain protein, putative, expressed -
13 Sobic.003G351701 - -
14 Sobic.003G316000 expressed protein -
15 Sobic.004G249000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.001G318000 glutathione S-transferase GSTU6, putative, expressed K00799: GST, glutathione S-transferase
17 Sobic.004G010300 glycerol-3-phosphate acyltransferase, putative, expressed K13508: glycerol-3-phosphate acyltransferase
18 Sobic.001G095632 - -
19 Sobic.003G079400 Ser/Thr protein kinase, putative, expressed -
20 Sobic.002G318100 expressed protein -


Gene co-expression network
sample Sobic001G284600 Sobic001G284600 Sobic006G028400 Sobic006G028400 Sobic001G284600--Sobic006G028400 Sobic007G157900 Sobic007G157900 Sobic001G284600--Sobic007G157900 Sobic005G168800 Sobic005G168800 Sobic001G284600--Sobic005G168800 Sobic003G050200 Sobic003G050200 Sobic001G284600--Sobic003G050200 Sobic003G416300 Sobic003G416300 Sobic001G284600--Sobic003G416300 Sobic001G240500 Sobic001G240500 Sobic001G284600--Sobic001G240500 Sobic004G351500 Sobic004G351500 Sobic001G284600--Sobic004G351500 Sobic009G062000 Sobic009G062000 Sobic001G284600--Sobic009G062000 Sobic008G128900 Sobic008G128900 Sobic001G284600--Sobic008G128900 Sobic006G183900 Sobic006G183900 Sobic006G028400--Sobic006G183900 Sobic003G203600 Sobic003G203600 Sobic006G028400--Sobic003G203600 Sobic007G170300 Sobic007G170300 Sobic006G028400--Sobic007G170300 Sobic007G109600 Sobic007G109600 Sobic006G028400--Sobic007G109600 Sobic007G178900 Sobic007G178900 Sobic006G028400--Sobic007G178900 Sobic002G185800 Sobic002G185800 Sobic006G028400--Sobic002G185800 Sobic002G365500 Sobic002G365500 Sobic006G028400--Sobic002G365500 Sobic004G071000 Sobic004G071000 Sobic006G028400--Sobic004G071000 Sobic002G365550 Sobic002G365550 Sobic006G028400--Sobic002G365550 Sobic009G238900 Sobic009G238900 Sobic007G157900--Sobic009G238900 Sobic007G157900--Sobic004G351500 Sobic010G194100 Sobic010G194100 Sobic007G157900--Sobic010G194100 Sobic002G232700 Sobic002G232700 Sobic007G157900--Sobic002G232700 Sobic009G054100 Sobic009G054100 Sobic007G157900--Sobic009G054100 Sobic003G417100 Sobic003G417100 Sobic007G157900--Sobic003G417100 Sobic004G062500 Sobic004G062500 Sobic007G157900--Sobic004G062500 Sobic004G262500 Sobic004G262500 Sobic007G157900--Sobic004G262500 Sobic007G127100 Sobic007G127100 Sobic007G157900--Sobic007G127100 Sobic005G168800--Sobic003G416300 Sobic003G079400 Sobic003G079400 Sobic005G168800--Sobic003G079400 Sobic001G082600 Sobic001G082600 Sobic005G168800--Sobic001G082600 Sobic004G046200 Sobic004G046200 Sobic005G168800--Sobic004G046200 Sobic008G106700 Sobic008G106700 Sobic005G168800--Sobic008G106700 Sobic005G168800--Sobic003G050200 Sobic009G179900 Sobic009G179900 Sobic005G168800--Sobic009G179900 Sobic001G139100 Sobic001G139100 Sobic005G168800--Sobic001G139100 Sobic001G325400 Sobic001G325400 Sobic005G168800--Sobic001G325400 Sobic003G050200--Sobic003G416300 Sobic003G050200--Sobic005G168800 Sobic001G014000 Sobic001G014000 Sobic003G050200--Sobic001G014000 Sobic004G042000 Sobic004G042000 Sobic003G050200--Sobic004G042000 Sobic010G251600 Sobic010G251600 Sobic003G050200--Sobic010G251600 Sobic002G003800 Sobic002G003800 Sobic003G050200--Sobic002G003800 Sobic010G008400 Sobic010G008400 Sobic003G050200--Sobic010G008400 Sobic009G035300 Sobic009G035300 Sobic003G050200--Sobic009G035300 Sobic001G432000 Sobic001G432000 Sobic003G050200--Sobic001G432000 Sobic003G416300--Sobic005G168800 Sobic002G327300 Sobic002G327300 Sobic003G416300--Sobic002G327300 Sobic003G416300--Sobic004G046200 Sobic003G416300--Sobic003G050200 Sobic002G312900 Sobic002G312900 Sobic003G416300--Sobic002G312900 Sobic003G416300--Sobic007G127100 Sobic003G416300--Sobic003G079400 Sobic003G416300--Sobic008G106700 Sobic003G416300--Sobic001G082600 Sobic001G240500--Sobic006G028400 Sobic001G240500--Sobic006G183900 Sobic010G212200 Sobic010G212200 Sobic001G240500--Sobic010G212200 Sobic009G157300 Sobic009G157300 Sobic001G240500--Sobic009G157300 Sobic001G240500--Sobic007G157900 Sobic002G271300 Sobic002G271300 Sobic001G240500--Sobic002G271300 Sobic001G240500--Sobic004G071000 Sobic001G240500--Sobic002G365500 Sobic001G240500--Sobic001G284600 Sobic001G364500 Sobic001G364500 Sobic004G351500--Sobic001G364500 Sobic001G087900 Sobic001G087900 Sobic004G351500--Sobic001G087900 Sobic002G155500 Sobic002G155500 Sobic004G351500--Sobic002G155500 Sobic001G034700 Sobic001G034700 Sobic004G351500--Sobic001G034700 Sobic004G351500--Sobic009G062000 Sobic004G225500 Sobic004G225500 Sobic004G351500--Sobic004G225500 Sobic001G536500 Sobic001G536500 Sobic004G351500--Sobic001G536500 Sobic002G078400 Sobic002G078400 Sobic004G351500--Sobic002G078400 Sobic008G129400 Sobic008G129400 Sobic004G351500--Sobic008G129400 Sobic001G304400 Sobic001G304400 Sobic009G062000--Sobic001G304400 Sobic001G095632 Sobic001G095632 Sobic009G062000--Sobic001G095632 Sobic009G062000--Sobic008G129400 Sobic009G062000--Sobic001G432000 Sobic010G018400 Sobic010G018400 Sobic009G062000--Sobic010G018400 Sobic009G062000--Sobic004G351500 Sobic003G305100 Sobic003G305100 Sobic009G062000--Sobic003G305100 Sobic001G286200 Sobic001G286200 Sobic009G062000--Sobic001G286200 Sobic002G073800 Sobic002G073800 Sobic009G062000--Sobic002G073800 Sobic008G128900--Sobic002G312900 Sobic007G161400 Sobic007G161400 Sobic008G128900--Sobic007G161400 Sobic008G128900--Sobic003G416300 Sobic001G494000 Sobic001G494000 Sobic008G128900--Sobic001G494000 Sobic005G043000 Sobic005G043000 Sobic008G128900--Sobic005G043000 Sobic008G128900--Sobic007G127100 Sobic003G363800 Sobic003G363800 Sobic008G128900--Sobic003G363800 Sobic010G195500 Sobic010G195500 Sobic008G128900--Sobic010G195500 Sobic003G280400 Sobic003G280400 Sobic008G128900--Sobic003G280400
Octagon: transcription factors


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