Gene annotation
Transcriptome id Sobic.007G157900.1
Synonym
Functional annotation gibberellin receptor GID1L2, putative, expressed
UniProt A0A1B6PI18
Pfam PF12695
Panther DB PTHR23024 PTHR23024:SF150
NCBI CDD KOG1515; Arylacetamide deacetylase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G47480 : alpha/beta-Hydrolases superfamily protein
RAP-DB (Rice) LOC_Os08g37060.1 : gibberellin receptor GID1L2, putative, expressed
MaizeGDB (Corn) Zm00025a031254 , Zm00025a014091 , Zm00025a005438 , Zm00025a005437
Brachypodium KQJ98616
Barley HORVU2Hr1G110800.1 , HORVU5Hr1G105480.3 , HORVU5Hr1G105480.2 , HORVU5Hr1G105480.1 , HORVU5Hr1G105480.4
Wheat TraesCS5B02G439900 , TraesCS2B02G526100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G157900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G238900 dehydrogenase, putative, expressed K00031: IDH1, IDH2, isocitrate dehydrogenase
2 Sobic.004G351500 - -
3 Sobic.010G194100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
4 Sobic.002G232700 clathrin assembly protein, putative, expressed -
5 Sobic.009G054100 GDSL-like lipase/acylhydrolase, putative, expressed -
6 Sobic.003G417100 esterase, putative, expressed -
7 Sobic.004G062500 "4-coumaroyl-CoA synthetase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Brown midrib2 (Bmr2) encodes the major 4-coumarate:coenzyme A ligase involved in lignin biosynthesis(PubMedID : 22313236)@4-Coumarate: Coenzyme A Ligase (4CL)(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
8 Sobic.004G262500 lectin-like protein kinase, putative, expressed -
9 Sobic.007G127100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
10 Sobic.002G361700 expressed protein -
11 Sobic.001G090000 expressed protein -
12 Sobic.008G128900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
13 Sobic.006G156000 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
14 Sobic.001G432700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.010G195500 reductase, putative, expressed -
16 Sobic.003G219800 transferase family protein, putative, expressed -
17 Sobic.004G064400 class I glutamine amidotransferase, putative, expressed -
18 Sobic.006G002700 OsRhmbd10 - Putative Rhomboid homologue, expressed -
19 Sobic.001G240500 flavoprotein wrbA, putative, expressed K03809: NAD(P)H dehydrogenase (quinone)
20 Sobic.001G284600 xyloglucan endotransglucosylase/hydrolase 29(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase


Gene co-expression network
sample Sobic007G157900 Sobic007G157900 Sobic009G238900 Sobic009G238900 Sobic007G157900--Sobic009G238900 Sobic004G351500 Sobic004G351500 Sobic007G157900--Sobic004G351500 Sobic010G194100 Sobic010G194100 Sobic007G157900--Sobic010G194100 Sobic002G232700 Sobic002G232700 Sobic007G157900--Sobic002G232700 Sobic009G054100 Sobic009G054100 Sobic007G157900--Sobic009G054100 Sobic003G417100 Sobic003G417100 Sobic007G157900--Sobic003G417100 Sobic004G062500 Sobic004G062500 Sobic007G157900--Sobic004G062500 Sobic004G262500 Sobic004G262500 Sobic007G157900--Sobic004G262500 Sobic007G127100 Sobic007G127100 Sobic007G157900--Sobic007G127100 Sobic003G219800 Sobic003G219800 Sobic009G238900--Sobic003G219800 Sobic001G444800 Sobic001G444800 Sobic009G238900--Sobic001G444800 Sobic005G112800 Sobic005G112800 Sobic009G238900--Sobic005G112800 Sobic006G035900 Sobic006G035900 Sobic009G238900--Sobic006G035900 Sobic001G040100 Sobic001G040100 Sobic009G238900--Sobic001G040100 Sobic001G418100 Sobic001G418100 Sobic009G238900--Sobic001G418100 Sobic002G361700 Sobic002G361700 Sobic009G238900--Sobic002G361700 Sobic003G443300 Sobic003G443300 Sobic009G238900--Sobic003G443300 Sobic001G514200 Sobic001G514200 Sobic009G238900--Sobic001G514200 Sobic001G364500 Sobic001G364500 Sobic004G351500--Sobic001G364500 Sobic001G087900 Sobic001G087900 Sobic004G351500--Sobic001G087900 Sobic002G155500 Sobic002G155500 Sobic004G351500--Sobic002G155500 Sobic001G034700 Sobic001G034700 Sobic004G351500--Sobic001G034700 Sobic009G062000 Sobic009G062000 Sobic004G351500--Sobic009G062000 Sobic004G225500 Sobic004G225500 Sobic004G351500--Sobic004G225500 Sobic001G536500 Sobic001G536500 Sobic004G351500--Sobic001G536500 Sobic002G078400 Sobic002G078400 Sobic004G351500--Sobic002G078400 Sobic008G129400 Sobic008G129400 Sobic004G351500--Sobic008G129400 Sobic010G194100--Sobic003G417100 Sobic006G256900 Sobic006G256900 Sobic010G194100--Sobic006G256900 Sobic006G274933 Sobic006G274933 Sobic010G194100--Sobic006G274933 Sobic002G185800 Sobic002G185800 Sobic010G194100--Sobic002G185800 Sobic010G194100--Sobic004G262500 Sobic003G404600 Sobic003G404600 Sobic010G194100--Sobic003G404600 Sobic001G176400 Sobic001G176400 Sobic010G194100--Sobic001G176400 Sobic003G280400 Sobic003G280400 Sobic010G194100--Sobic003G280400 Sobic006G230300 Sobic006G230300 Sobic010G194100--Sobic006G230300 Sobic009G065300 Sobic009G065300 Sobic002G232700--Sobic009G065300 Sobic002G232700--Sobic007G157900 Sobic003G192100 Sobic003G192100 Sobic002G232700--Sobic003G192100 Sobic010G268400 Sobic010G268400 Sobic002G232700--Sobic010G268400 Sobic009G130100 Sobic009G130100 Sobic002G232700--Sobic009G130100 Sobic002G232700--Sobic004G262500 Sobic003G228200 Sobic003G228200 Sobic002G232700--Sobic003G228200 Sobic004G308400 Sobic004G308400 Sobic002G232700--Sobic004G308400 Sobic002G232700--Sobic007G127100 Sobic010G195500 Sobic010G195500 Sobic009G054100--Sobic010G195500 Sobic009G054100--Sobic007G157900 Sobic009G054100--Sobic010G194100 Sobic008G128900 Sobic008G128900 Sobic009G054100--Sobic008G128900 Sobic009G054100--Sobic009G130100 Sobic002G312900 Sobic002G312900 Sobic009G054100--Sobic002G312900 Sobic009G054100--Sobic003G280400 Sobic009G054100--Sobic004G351500 Sobic009G054100--Sobic002G155500 Sobic002G042200 Sobic002G042200 Sobic003G417100--Sobic002G042200 Sobic003G215200 Sobic003G215200 Sobic003G417100--Sobic003G215200 Sobic003G417100--Sobic010G194100 Sobic003G417100--Sobic006G274933 Sobic006G197100 Sobic006G197100 Sobic003G417100--Sobic006G197100 Sobic003G140700 Sobic003G140700 Sobic003G417100--Sobic003G140700 Sobic007G050200 Sobic007G050200 Sobic003G417100--Sobic007G050200 Sobic003G228600 Sobic003G228600 Sobic003G417100--Sobic003G228600 Sobic002G216100 Sobic002G216100 Sobic003G417100--Sobic002G216100 Sobic010G252500 Sobic010G252500 Sobic004G062500--Sobic010G252500 Sobic004G062500--Sobic010G195500 Sobic004G212300 Sobic004G212300 Sobic004G062500--Sobic004G212300 Sobic007G218800 Sobic007G218800 Sobic004G062500--Sobic007G218800 Sobic010G085800 Sobic010G085800 Sobic004G062500--Sobic010G085800 Sobic003G119500 Sobic003G119500 Sobic004G062500--Sobic003G119500 Sobic004G062500--Sobic010G268400 Sobic001G494000 Sobic001G494000 Sobic004G062500--Sobic001G494000 Sobic004G062500--Sobic003G219800 Sobic004G262500--Sobic009G130100 Sobic004G262500--Sobic006G274933 Sobic004G262500--Sobic003G404600 Sobic004G262500--Sobic003G417100 Sobic004G262500--Sobic006G256900 Sobic009G219200 Sobic009G219200 Sobic004G262500--Sobic009G219200 Sobic004G024100 Sobic004G024100 Sobic004G262500--Sobic004G024100 Sobic004G042000 Sobic004G042000 Sobic004G262500--Sobic004G042000 Sobic004G262500--Sobic006G197100 Sobic003G416300 Sobic003G416300 Sobic007G127100--Sobic003G416300 Sobic002G327300 Sobic002G327300 Sobic007G127100--Sobic002G327300 Sobic010G008400 Sobic010G008400 Sobic007G127100--Sobic010G008400 Sobic007G127100--Sobic008G128900 Sobic007G127100--Sobic009G065300 Sobic001G432700 Sobic001G432700 Sobic007G127100--Sobic001G432700 Sobic002G407100 Sobic002G407100 Sobic007G127100--Sobic002G407100 Sobic004G064400 Sobic004G064400 Sobic007G127100--Sobic004G064400 Sobic009G121900 Sobic009G121900 Sobic007G127100--Sobic009G121900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.