Gene annotation
Transcriptome id Sobic.004G064400.1
Synonym Sb04g005350
Functional annotation class I glutamine amidotransferase, putative, expressed
UniProt C5XWB1
Pfam PF00117
Panther DB PTHR11922 PTHR11922:SF41
NCBI CDD KOG3179; Predicted glutamine synthetase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G23970 : Class I glutamine amidotransferase-like superfamily protein
RAP-DB (Rice) LOC_Os02g08270.1 : class I glutamine amidotransferase, putative, expressed
MaizeGDB (Corn) Zm00025a034733 , Zm00025a013937 , Zm00025a017095
Brachypodium -
Barley HORVU6Hr1G029750.2 , HORVU4Hr1G004260.2 , HORVU4Hr1G004260.3 , HORVU4Hr1G004260.1 , HORVU6Hr1G029750.1 , HORVU4Hr1G004260.7 , HORVU4Hr1G004260.5
Wheat TraesCS6A02G149700 , TraesCS4A02G284400 , TraesCS4A02G284400 , TraesCS4D02G026300 , TraesCS6B02G177600 , TraesCS6D02G139000 , TraesCS4B02G028700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G119500 expressed protein -
2 Sobic.002G407100 expressed protein -
3 Sobic.007G127100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
4 Sobic.009G121900 Annexin arabidopsis 4(PubMedID : 26320239)@annexin, putative, expressed -
5 Sobic.009G109000 expressed protein -
6 Sobic.010G008400 bark storage protein A precursor, putative, expressed -
7 Sobic.002G327300 expressed protein -
8 Sobic.002G327100 expressed protein -
9 Sobic.002G176100 membrane protein, putative, expressed -
10 Sobic.001G418100 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
11 Sobic.006G282300 - -
12 Sobic.004G306200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
13 Sobic.006G009100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WD40-like Beta Propeller Repeat family protein, expressed -
14 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
15 Sobic.001G189300 AMP-binding domain containing protein, expressed -
16 Sobic.004G216300 - -
17 Sobic.006G050800 expressed protein -
18 Sobic.004G295100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09873: aquaporin TIP
19 Sobic.003G319500 receptor protein kinase, putative, expressed -
20 Sobic.006G009000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -


Gene co-expression network
sample Sobic004G064400 Sobic004G064400 Sobic003G119500 Sobic003G119500 Sobic004G064400--Sobic003G119500 Sobic002G407100 Sobic002G407100 Sobic004G064400--Sobic002G407100 Sobic007G127100 Sobic007G127100 Sobic004G064400--Sobic007G127100 Sobic009G121900 Sobic009G121900 Sobic004G064400--Sobic009G121900 Sobic009G109000 Sobic009G109000 Sobic004G064400--Sobic009G109000 Sobic010G008400 Sobic010G008400 Sobic004G064400--Sobic010G008400 Sobic002G327300 Sobic002G327300 Sobic004G064400--Sobic002G327300 Sobic002G327100 Sobic002G327100 Sobic004G064400--Sobic002G327100 Sobic002G176100 Sobic002G176100 Sobic004G064400--Sobic002G176100 Sobic010G212500 Sobic010G212500 Sobic003G119500--Sobic010G212500 Sobic003G311800 Sobic003G311800 Sobic003G119500--Sobic003G311800 Sobic002G003800 Sobic002G003800 Sobic003G119500--Sobic002G003800 Sobic003G119500--Sobic009G109000 Sobic001G049900 Sobic001G049900 Sobic003G119500--Sobic001G049900 Sobic006G274933 Sobic006G274933 Sobic003G119500--Sobic006G274933 Sobic004G348800 Sobic004G348800 Sobic003G119500--Sobic004G348800 Sobic004G297900 Sobic004G297900 Sobic003G119500--Sobic004G297900 Sobic010G085800 Sobic010G085800 Sobic003G119500--Sobic010G085800 Sobic001G397300 Sobic001G397300 Sobic002G407100--Sobic001G397300 Sobic007G178000 Sobic007G178000 Sobic002G407100--Sobic007G178000 Sobic002G407100--Sobic009G121900 Sobic002G407100--Sobic002G327300 Sobic002G250000 Sobic002G250000 Sobic002G407100--Sobic002G250000 Sobic001G432700 Sobic001G432700 Sobic002G407100--Sobic001G432700 Sobic007G006300 Sobic007G006300 Sobic002G407100--Sobic007G006300 Sobic002G327201 Sobic002G327201 Sobic002G407100--Sobic002G327201 Sobic009G074100 Sobic009G074100 Sobic002G407100--Sobic009G074100 Sobic003G416300 Sobic003G416300 Sobic007G127100--Sobic003G416300 Sobic007G127100--Sobic002G327300 Sobic007G127100--Sobic010G008400 Sobic008G128900 Sobic008G128900 Sobic007G127100--Sobic008G128900 Sobic009G065300 Sobic009G065300 Sobic007G127100--Sobic009G065300 Sobic007G127100--Sobic001G432700 Sobic007G127100--Sobic002G407100 Sobic007G127100--Sobic004G064400 Sobic007G127100--Sobic009G121900 Sobic009G121900--Sobic002G407100 Sobic009G121900--Sobic007G127100 Sobic009G121900--Sobic004G064400 Sobic009G121900--Sobic010G008400 Sobic009G121900--Sobic002G327300 Sobic009G121900--Sobic009G065300 Sobic003G110200 Sobic003G110200 Sobic009G121900--Sobic003G110200 Sobic009G121900--Sobic001G432700 Sobic003G376100 Sobic003G376100 Sobic009G121900--Sobic003G376100 Sobic009G109000--Sobic003G311800 Sobic009G109000--Sobic004G297900 Sobic009G109000--Sobic001G049900 Sobic008G055100 Sobic008G055100 Sobic009G109000--Sobic008G055100 Sobic003G053400 Sobic003G053400 Sobic009G109000--Sobic003G053400 Sobic003G411200 Sobic003G411200 Sobic009G109000--Sobic003G411200 Sobic009G109000--Sobic004G348800 Sobic008G009400 Sobic008G009400 Sobic009G109000--Sobic008G009400 Sobic001G430100 Sobic001G430100 Sobic009G109000--Sobic001G430100 Sobic010G008400--Sobic002G176100 Sobic010G008400--Sobic002G003800 Sobic003G319500 Sobic003G319500 Sobic010G008400--Sobic003G319500 Sobic010G008400--Sobic002G327300 Sobic004G046200 Sobic004G046200 Sobic010G008400--Sobic004G046200 Sobic001G500000 Sobic001G500000 Sobic010G008400--Sobic001G500000 Sobic010G008400--Sobic010G085800 Sobic002G017800 Sobic002G017800 Sobic010G008400--Sobic002G017800 Sobic009G111000 Sobic009G111000 Sobic010G008400--Sobic009G111000 Sobic002G327300--Sobic010G008400 Sobic003G264600 Sobic003G264600 Sobic002G327300--Sobic003G264600 Sobic002G327300--Sobic004G046200 Sobic003G084400 Sobic003G084400 Sobic002G327300--Sobic003G084400 Sobic003G228200 Sobic003G228200 Sobic002G327300--Sobic003G228200 Sobic002G327300--Sobic003G319500 Sobic002G327300--Sobic002G327100 Sobic002G327300--Sobic001G500000 Sobic002G327300--Sobic002G017800 Sobic004G295100 Sobic004G295100 Sobic002G327100--Sobic004G295100 Sobic002G327100--Sobic008G009400 Sobic006G009100 Sobic006G009100 Sobic002G327100--Sobic006G009100 Sobic002G327100--Sobic003G228200 Sobic002G327100--Sobic002G327300 Sobic001G330300 Sobic001G330300 Sobic002G327100--Sobic001G330300 Sobic002G327100--Sobic003G311800 Sobic002G327100--Sobic002G176100 Sobic003G299300 Sobic003G299300 Sobic002G327100--Sobic003G299300 Sobic002G176100--Sobic003G319500 Sobic002G176100--Sobic009G111000 Sobic004G141100 Sobic004G141100 Sobic002G176100--Sobic004G141100 Sobic002G176100--Sobic010G008400 Sobic003G417200 Sobic003G417200 Sobic002G176100--Sobic003G417200 Sobic010G184800 Sobic010G184800 Sobic002G176100--Sobic010G184800 Sobic002G176100--Sobic008G009400 Sobic001G304100 Sobic001G304100 Sobic002G176100--Sobic001G304100 Sobic009G188000 Sobic009G188000 Sobic002G176100--Sobic009G188000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.