Gene annotation
Transcriptome id Sobic.006G009000.1
Synonym Sb06g000920
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
zinc finger family protein, putative, expressed
UniProt C5YBP8
Pfam PF14624 PF00092
Panther DB PTHR10579 PTHR10579:SF64
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G60710 : Zinc finger (C3HC4-type RING finger) family protein
RAP-DB (Rice) LOC_Os03g28990.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a054498 , Zm00025a055446
Brachypodium KQJ98240 , KQJ98245
Barley HORVU5Hr1G001450.1 , HORVU7Hr1G001030.6 , HORVU5Hr1G070100.1 , HORVU7Hr1G001030.8 , HORVU7Hr1G001030.7 , HORVU7Hr1G001030.5
Wheat TraesCS5B02G009600 , TraesCS5B02G009400 , TraesCS5D02G016400 , TraesCS5A02G011500 , TraesCS5A02G011500 , TraesCS6B02G057500 , TraesCS5D02G016600
Populus -


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cDNA sequences
Sobic.006G009000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G009100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WD40-like Beta Propeller Repeat family protein, expressed -
2 Sobic.010G192900 expressed protein -
3 Sobic.002G327100 expressed protein -
4 Sobic.009G065300 expressed protein -
5 Sobic.006G255400 glycosyl hydrolases, putative, expressed K01193: INV, beta-fructofuranosidase
6 Sobic.007G127100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
7 Sobic.006G050800 expressed protein -
8 Sobic.006G068800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family protein, putative, expressed -
9 Sobic.003G360200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@homeobox domain containing protein, expressed -
10 Sobic.003G136200 Cupin domain containing protein, expressed -
11 Sobic.K026900 peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.004G064400 class I glutamine amidotransferase, putative, expressed -
13 Sobic.009G109000 expressed protein -
14 Sobic.005G067500 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
15 Sobic.002G301900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
16 Sobic.001G330300 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
17 Sobic.006G202600 Up-reguralion under heat(PubMedID : 24916767)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
18 Sobic.010G045500 AMP-binding enzyme, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
19 Sobic.003G228200 cytochrome P450 72A1, putative, expressed -
20 Sobic.010G270700 GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic006G009000 Sobic006G009000 Sobic006G009100 Sobic006G009100 Sobic006G009000--Sobic006G009100 Sobic010G192900 Sobic010G192900 Sobic006G009000--Sobic010G192900 Sobic002G327100 Sobic002G327100 Sobic006G009000--Sobic002G327100 Sobic009G065300 Sobic009G065300 Sobic006G009000--Sobic009G065300 Sobic006G255400 Sobic006G255400 Sobic006G009000--Sobic006G255400 Sobic007G127100 Sobic007G127100 Sobic006G009000--Sobic007G127100 Sobic006G050800 Sobic006G050800 Sobic006G009000--Sobic006G050800 Sobic006G068800 Sobic006G068800 Sobic006G009000--Sobic006G068800 Sobic003G360200 Sobic003G360200 Sobic006G009000--Sobic003G360200 Sobic006G009100--Sobic006G009000 Sobic006G009100--Sobic002G327100 Sobic003G136200 Sobic003G136200 Sobic006G009100--Sobic003G136200 Sobic010G196000 Sobic010G196000 Sobic006G009100--Sobic010G196000 Sobic001G330300 Sobic001G330300 Sobic006G009100--Sobic001G330300 Sobic006G158400 Sobic006G158400 Sobic006G009100--Sobic006G158400 Sobic004G295100 Sobic004G295100 Sobic006G009100--Sobic004G295100 Sobic006G009100--Sobic006G050800 Sobic005G067500 Sobic005G067500 Sobic006G009100--Sobic005G067500 Sobic010G192900--Sobic006G068800 Sobic010G192900--Sobic002G327100 Sobic003G037500 Sobic003G037500 Sobic010G192900--Sobic003G037500 Sobic004G297900 Sobic004G297900 Sobic010G192900--Sobic004G297900 Sobic010G192900--Sobic006G009000 Sobic010G192900--Sobic006G009100 Sobic003G228200 Sobic003G228200 Sobic010G192900--Sobic003G228200 Sobic010G192900--Sobic006G255400 Sobic003G311800 Sobic003G311800 Sobic010G192900--Sobic003G311800 Sobic002G327100--Sobic004G295100 Sobic008G009400 Sobic008G009400 Sobic002G327100--Sobic008G009400 Sobic002G327100--Sobic006G009100 Sobic002G327100--Sobic003G228200 Sobic002G327300 Sobic002G327300 Sobic002G327100--Sobic002G327300 Sobic002G327100--Sobic001G330300 Sobic002G327100--Sobic003G311800 Sobic002G176100 Sobic002G176100 Sobic002G327100--Sobic002G176100 Sobic003G299300 Sobic003G299300 Sobic002G327100--Sobic003G299300 Sobic009G065300--Sobic002G327300 Sobic001G234800 Sobic001G234800 Sobic009G065300--Sobic001G234800 Sobic009G065300--Sobic002G327100 Sobic009G065300--Sobic003G228200 Sobic003G416300 Sobic003G416300 Sobic009G065300--Sobic003G416300 Sobic009G065300--Sobic003G037500 Sobic009G065300--Sobic007G127100 Sobic001G318500 Sobic001G318500 Sobic009G065300--Sobic001G318500 Sobic002G302500 Sobic002G302500 Sobic009G065300--Sobic002G302500 Sobic006G255400--Sobic008G009400 Sobic006G255400--Sobic004G297900 Sobic006G235200 Sobic006G235200 Sobic006G255400--Sobic006G235200 Sobic010G270700 Sobic010G270700 Sobic006G255400--Sobic010G270700 Sobic002G301900 Sobic002G301900 Sobic006G255400--Sobic002G301900 Sobic002G183700 Sobic002G183700 Sobic006G255400--Sobic002G183700 Sobic006G255400--Sobic004G295100 Sobic006G255400--Sobic003G311800 Sobic009G109000 Sobic009G109000 Sobic006G255400--Sobic009G109000 Sobic007G127100--Sobic003G416300 Sobic007G127100--Sobic002G327300 Sobic010G008400 Sobic010G008400 Sobic007G127100--Sobic010G008400 Sobic008G128900 Sobic008G128900 Sobic007G127100--Sobic008G128900 Sobic007G127100--Sobic009G065300 Sobic001G432700 Sobic001G432700 Sobic007G127100--Sobic001G432700 Sobic002G407100 Sobic002G407100 Sobic007G127100--Sobic002G407100 Sobic004G064400 Sobic004G064400 Sobic007G127100--Sobic004G064400 Sobic009G121900 Sobic009G121900 Sobic007G127100--Sobic009G121900 Sobic004G180700 Sobic004G180700 Sobic006G050800--Sobic004G180700 Sobic006G050800--Sobic010G196000 Sobic006G050800--Sobic001G330300 Sobic006G202600 Sobic006G202600 Sobic006G050800--Sobic006G202600 Sobic006G050800--Sobic004G295100 Sobic004G301600 Sobic004G301600 Sobic006G050800--Sobic004G301600 Sobic006G050800--Sobic002G301900 Sobic006G050800--Sobic003G136200 Sobic010G009900 Sobic010G009900 Sobic006G050800--Sobic010G009900 Sobic006G068800--Sobic010G192900 Sobic006G068800--Sobic002G327100 Sobic001G395800 Sobic001G395800 Sobic006G068800--Sobic001G395800 Sobic006G068800--Sobic004G297900 Sobic006G068800--Sobic003G311800 Sobic006G068800--Sobic003G037500 Sobic005G073000 Sobic005G073000 Sobic006G068800--Sobic005G073000 Sobic003G411200 Sobic003G411200 Sobic006G068800--Sobic003G411200 Sobic001G416200 Sobic001G416200 Sobic006G068800--Sobic001G416200 Sobic003G360200--Sobic007G127100 Sobic003G360200--Sobic006G009000 Sobic003G360200--Sobic009G065300 Sobic003G360200--Sobic003G416300 Sobic003G360200--Sobic001G432700 Sobic006G246100 Sobic006G246100 Sobic003G360200--Sobic006G246100 Sobic003G360200--Sobic002G327300 Sobic007G115500 Sobic007G115500 Sobic003G360200--Sobic007G115500 Sobic003G135700 Sobic003G135700 Sobic003G360200--Sobic003G135700
Octagon: transcription factors


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