Gene annotation
Transcriptome id Sobic.010G045500.1
Synonym LACS4
Functional annotation AMP-binding enzyme, putative, expressed
UniProt A0A194YHC1
Pfam PF00501
Panther DB PTHR24096 PTHR24096:SF237
NCBI CDD -
KEGG Orthology K01897; ACSL, long-chain acyl-CoA synthetase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT4G23850 : AMP-dependent synthetase and ligase family protein
RAP-DB (Rice) LOC_Os06g06350.1 : AMP-binding enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a049978
Brachypodium KQK19520 , KQK19519 , KQK19518
Barley HORVU7Hr1G024350.26 , HORVU7Hr1G024350.27 , HORVU7Hr1G024350.24 , HORVU7Hr1G024350.25 , HORVU7Hr1G024350.22 , HORVU7Hr1G024350.23 , HORVU7Hr1G024350.20 , HORVU7Hr1G024350.21 , HORVU7Hr1G024350.28 , HORVU7Hr1G024350.29 , HORVU7Hr1G024350.7 , HORVU7Hr1G024350.6 , HORVU7Hr1G024350.5 , HORVU7Hr1G024350.4 , HORVU7Hr1G024350.3 , HORVU7Hr1G024350.2 , HORVU7Hr1G024350.1 , HORVU7Hr1G024350.9 , HORVU7Hr1G024350.8 , HORVU7Hr1G024350.19 , HORVU7Hr1G024350.18 , HORVU7Hr1G024350.17 , HORVU7Hr1G024350.16 , HORVU7Hr1G024350.15 , HORVU7Hr1G024350.14 , HORVU7Hr1G024350.13 , HORVU7Hr1G024350.12 , HORVU7Hr1G024350.11 , HORVU7Hr1G024350.10 , HORVU7Hr1G024350.31 , HORVU7Hr1G024350.30 , HORVU7Hr1G024350.33 , HORVU7Hr1G024350.32 , HORVU7Hr1G024350.35
Wheat TraesCS7B02G012700 , TraesCS7A02G115900 , TraesCS7D02G110700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G242100 expressed protein -
2 Sobic.002G301900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
3 Sobic.006G234466 - -
4 Sobic.004G180700 expressed protein -
5 Sobic.005G215400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
6 Sobic.004G322800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
7 Sobic.010G270700 GDSL-like lipase/acylhydrolase, putative, expressed -
8 Sobic.004G301600 integral membrane protein, putative, expressed -
9 Sobic.008G128200 - -
10 Sobic.006G050800 expressed protein -
11 Sobic.003G136200 Cupin domain containing protein, expressed -
12 Sobic.005G160700 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
13 Sobic.002G391800 peroxidase, putative, expressed K00430: peroxidase
14 Sobic.010G009900 - -
15 Sobic.008G002800 fatty acid desaturase, putative, expressed K10257: FAD3, FAD7, FAD8, acyl-lipid omega-3 desaturase
16 Sobic.001G232700 - -
17 Sobic.001G342400 SPX domain-3("PubMedID : 26759170,PubMedID : 24597475")@SPX domain-containing protein, putative, expressed -
18 Sobic.006G079300 peroxidase precursor, putative, expressed K00430: peroxidase
19 Sobic.002G105300 SCP-like extracellular protein, expressed -
20 Sobic.007G204700 expressed protein -


Gene co-expression network
sample Sobic010G045500 Sobic010G045500 Sobic001G242100 Sobic001G242100 Sobic010G045500--Sobic001G242100 Sobic002G301900 Sobic002G301900 Sobic010G045500--Sobic002G301900 Sobic006G234466 Sobic006G234466 Sobic010G045500--Sobic006G234466 Sobic004G180700 Sobic004G180700 Sobic010G045500--Sobic004G180700 Sobic005G215400 Sobic005G215400 Sobic010G045500--Sobic005G215400 Sobic004G322800 Sobic004G322800 Sobic010G045500--Sobic004G322800 Sobic010G270700 Sobic010G270700 Sobic010G045500--Sobic010G270700 Sobic004G301600 Sobic004G301600 Sobic010G045500--Sobic004G301600 Sobic008G128200 Sobic008G128200 Sobic010G045500--Sobic008G128200 Sobic001G242100--Sobic002G301900 Sobic001G242100--Sobic010G045500 Sobic006G079300 Sobic006G079300 Sobic001G242100--Sobic006G079300 Sobic003G400900 Sobic003G400900 Sobic001G242100--Sobic003G400900 Sobic005G222500 Sobic005G222500 Sobic001G242100--Sobic005G222500 Sobic001G502000 Sobic001G502000 Sobic001G242100--Sobic001G502000 Sobic001G232700 Sobic001G232700 Sobic001G242100--Sobic001G232700 Sobic001G242100--Sobic004G322800 Sobic005G160700 Sobic005G160700 Sobic001G242100--Sobic005G160700 Sobic002G301900--Sobic001G242100 Sobic002G301900--Sobic010G045500 Sobic002G301900--Sobic001G502000 Sobic006G170600 Sobic006G170600 Sobic002G301900--Sobic006G170600 Sobic002G301900--Sobic003G400900 Sobic002G301900--Sobic005G222500 Sobic004G299600 Sobic004G299600 Sobic002G301900--Sobic004G299600 Sobic002G183700 Sobic002G183700 Sobic002G301900--Sobic002G183700 Sobic002G301900--Sobic004G180700 Sobic006G234466--Sobic010G045500 Sobic001G342400 Sobic001G342400 Sobic006G234466--Sobic001G342400 Sobic001G504100 Sobic001G504100 Sobic006G234466--Sobic001G504100 Sobic006G234466--Sobic002G301900 Sobic006G050800 Sobic006G050800 Sobic006G234466--Sobic006G050800 Sobic006G234466--Sobic010G270700 Sobic008G009400 Sobic008G009400 Sobic006G234466--Sobic008G009400 Sobic001G242000 Sobic001G242000 Sobic006G234466--Sobic001G242000 Sobic001G234900 Sobic001G234900 Sobic006G234466--Sobic001G234900 Sobic004G180700--Sobic004G301600 Sobic002G105300 Sobic002G105300 Sobic004G180700--Sobic002G105300 Sobic006G202600 Sobic006G202600 Sobic004G180700--Sobic006G202600 Sobic004G180700--Sobic006G050800 Sobic004G180700--Sobic006G170600 Sobic010G196000 Sobic010G196000 Sobic004G180700--Sobic010G196000 Sobic004G295100 Sobic004G295100 Sobic004G180700--Sobic004G295100 Sobic004G180700--Sobic002G301900 Sobic005G163800 Sobic005G163800 Sobic004G180700--Sobic005G163800 Sobic004G348800 Sobic004G348800 Sobic005G215400--Sobic004G348800 Sobic007G204700 Sobic007G204700 Sobic005G215400--Sobic007G204700 Sobic005G215400--Sobic010G045500 Sobic001G430100 Sobic001G430100 Sobic005G215400--Sobic001G430100 Sobic010G212500 Sobic010G212500 Sobic005G215400--Sobic010G212500 Sobic005G215400--Sobic002G105300 Sobic003G119500 Sobic003G119500 Sobic005G215400--Sobic003G119500 Sobic007G050200 Sobic007G050200 Sobic005G215400--Sobic007G050200 Sobic005G215400--Sobic004G322800 Sobic010G148800 Sobic010G148800 Sobic004G322800--Sobic010G148800 Sobic004G322800--Sobic006G079300 Sobic009G074500 Sobic009G074500 Sobic004G322800--Sobic009G074500 Sobic004G322800--Sobic001G242100 Sobic001G438200 Sobic001G438200 Sobic004G322800--Sobic001G438200 Sobic004G209400 Sobic004G209400 Sobic004G322800--Sobic004G209400 Sobic009G199001 Sobic009G199001 Sobic004G322800--Sobic009G199001 Sobic003G282200 Sobic003G282200 Sobic004G322800--Sobic003G282200 Sobic002G404100 Sobic002G404100 Sobic004G322800--Sobic002G404100 Sobic003G282100 Sobic003G282100 Sobic010G270700--Sobic003G282100 Sobic010G270700--Sobic008G009400 Sobic001G330300 Sobic001G330300 Sobic010G270700--Sobic001G330300 SobicK026900 SobicK026900 Sobic010G270700--SobicK026900 Sobic004G297900 Sobic004G297900 Sobic010G270700--Sobic004G297900 Sobic003G299300 Sobic003G299300 Sobic010G270700--Sobic003G299300 Sobic008G127933 Sobic008G127933 Sobic010G270700--Sobic008G127933 Sobic003G311800 Sobic003G311800 Sobic010G270700--Sobic003G311800 Sobic009G109000 Sobic009G109000 Sobic010G270700--Sobic009G109000 Sobic004G301600--Sobic004G180700 Sobic004G301600--Sobic006G170600 Sobic004G301600--Sobic006G202600 Sobic004G301600--Sobic006G050800 Sobic004G301600--Sobic002G301900 Sobic004G301600--Sobic002G105300 Sobic007G090469 Sobic007G090469 Sobic004G301600--Sobic007G090469 Sobic004G301600--Sobic010G196000 Sobic004G301600--Sobic004G295100 Sobic008G128200--Sobic007G204700 Sobic008G128066 Sobic008G128066 Sobic008G128200--Sobic008G128066 Sobic008G128200--Sobic010G045500 Sobic003G364200 Sobic003G364200 Sobic008G128200--Sobic003G364200 Sobic006G078900 Sobic006G078900 Sobic008G128200--Sobic006G078900 Sobic008G128200--Sobic008G127933 Sobic008G128200--Sobic005G215400 Sobic005G069800 Sobic005G069800 Sobic008G128200--Sobic005G069800 Sobic005G066100 Sobic005G066100 Sobic008G128200--Sobic005G066100
Octagon: transcription factors


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