Gene annotation
Transcriptome id Sobic.006G009100.1
Synonym Sb06g000930
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
WD40-like Beta Propeller Repeat family protein, expressed
UniProt C5YBP9
Pfam PF07676
Panther DB PTHR32161 PTHR32161:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G21680 : DPP6 N-terminal domain-like protein
RAP-DB (Rice) LOC_Os03g28980.1 : WD40-like Beta Propeller Repeat family protein, expressed
MaizeGDB (Corn) Zm00025a055444
Brachypodium PNT68080 , PNT68082 , PNT68081 , KQJ92896 , PNT65727 , KQJ92894 , KQJ92895 , PNT65726 , KQJ92897
Barley -
Wheat TraesCS7B02G344500 , TraesCS6D02G047800 , TraesCS6D02G047800 , TraesCS4A02G484600 , TraesCS4A02G484600 , TraesCS7A02G010400 , TraesCS7A02G010400 , TraesCS5B02G009500 , TraesCS7D02G434600 , TraesCS5D02G016500 , TraesCS5A02G011600 , TraesCS7D02G010100
Populus -


JBrowse

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cDNA sequences
Sobic.006G009100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G009000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
2 Sobic.002G327100 expressed protein -
3 Sobic.003G136200 Cupin domain containing protein, expressed -
4 Sobic.010G196000 DNA binding protein, putative, expressed -
5 Sobic.001G330300 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
6 Sobic.006G158400 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
7 Sobic.004G295100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09873: aquaporin TIP
8 Sobic.006G050800 expressed protein -
9 Sobic.005G067500 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
10 Sobic.K026900 peroxidase precursor, putative, expressed K00430: peroxidase
11 Sobic.008G009400 - -
12 Sobic.003G299300 expressed protein -
13 Sobic.003G426600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
14 Sobic.010G082600 EF hand family protein, putative, expressed -
15 Sobic.010G271300 carrier, putative, expressed -
16 Sobic.009G109000 expressed protein -
17 Sobic.004G141100 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
18 Sobic.004G297900 plastocyanin-like domain containing protein, putative, expressed -
19 Sobic.008G127933 - -
20 Sobic.002G124500 expansin precursor, putative, expressed -


Gene co-expression network
sample Sobic006G009100 Sobic006G009100 Sobic006G009000 Sobic006G009000 Sobic006G009100--Sobic006G009000 Sobic002G327100 Sobic002G327100 Sobic006G009100--Sobic002G327100 Sobic003G136200 Sobic003G136200 Sobic006G009100--Sobic003G136200 Sobic010G196000 Sobic010G196000 Sobic006G009100--Sobic010G196000 Sobic001G330300 Sobic001G330300 Sobic006G009100--Sobic001G330300 Sobic006G158400 Sobic006G158400 Sobic006G009100--Sobic006G158400 Sobic004G295100 Sobic004G295100 Sobic006G009100--Sobic004G295100 Sobic006G050800 Sobic006G050800 Sobic006G009100--Sobic006G050800 Sobic005G067500 Sobic005G067500 Sobic006G009100--Sobic005G067500 Sobic006G009000--Sobic006G009100 Sobic010G192900 Sobic010G192900 Sobic006G009000--Sobic010G192900 Sobic006G009000--Sobic002G327100 Sobic009G065300 Sobic009G065300 Sobic006G009000--Sobic009G065300 Sobic006G255400 Sobic006G255400 Sobic006G009000--Sobic006G255400 Sobic007G127100 Sobic007G127100 Sobic006G009000--Sobic007G127100 Sobic006G009000--Sobic006G050800 Sobic006G068800 Sobic006G068800 Sobic006G009000--Sobic006G068800 Sobic003G360200 Sobic003G360200 Sobic006G009000--Sobic003G360200 Sobic002G327100--Sobic004G295100 Sobic008G009400 Sobic008G009400 Sobic002G327100--Sobic008G009400 Sobic002G327100--Sobic006G009100 Sobic003G228200 Sobic003G228200 Sobic002G327100--Sobic003G228200 Sobic002G327300 Sobic002G327300 Sobic002G327100--Sobic002G327300 Sobic002G327100--Sobic001G330300 Sobic003G311800 Sobic003G311800 Sobic002G327100--Sobic003G311800 Sobic002G176100 Sobic002G176100 Sobic002G327100--Sobic002G176100 Sobic003G299300 Sobic003G299300 Sobic002G327100--Sobic003G299300 Sobic003G136200--Sobic006G050800 SobicK026900 SobicK026900 Sobic003G136200--SobicK026900 Sobic003G136200--Sobic006G009100 Sobic002G301900 Sobic002G301900 Sobic003G136200--Sobic002G301900 Sobic003G136200--Sobic004G295100 Sobic004G297900 Sobic004G297900 Sobic003G136200--Sobic004G297900 Sobic003G136200--Sobic010G196000 Sobic010G045500 Sobic010G045500 Sobic003G136200--Sobic010G045500 Sobic009G109000 Sobic009G109000 Sobic003G136200--Sobic009G109000 Sobic010G196000--Sobic004G295100 Sobic006G202600 Sobic006G202600 Sobic010G196000--Sobic006G202600 Sobic004G180700 Sobic004G180700 Sobic010G196000--Sobic004G180700 Sobic010G196000--Sobic006G050800 Sobic003G426600 Sobic003G426600 Sobic010G196000--Sobic003G426600 Sobic002G105300 Sobic002G105300 Sobic010G196000--Sobic002G105300 Sobic010G196000--Sobic001G330300 Sobic009G188000 Sobic009G188000 Sobic010G196000--Sobic009G188000 Sobic010G196000--Sobic005G067500 Sobic001G330300--Sobic003G299300 Sobic001G330300--Sobic004G295100 Sobic001G330300--Sobic008G009400 Sobic001G330300--Sobic006G050800 Sobic010G270700 Sobic010G270700 Sobic001G330300--Sobic010G270700 Sobic004G141100 Sobic004G141100 Sobic001G330300--Sobic004G141100 Sobic001G330300--Sobic010G196000 Sobic001G242000 Sobic001G242000 Sobic001G330300--Sobic001G242000 Sobic003G282100 Sobic003G282100 Sobic001G330300--Sobic003G282100 Sobic008G127933 Sobic008G127933 Sobic006G158400--Sobic008G127933 Sobic008G027600 Sobic008G027600 Sobic006G158400--Sobic008G027600 Sobic001G237900 Sobic001G237900 Sobic006G158400--Sobic001G237900 Sobic010G158500 Sobic010G158500 Sobic006G158400--Sobic010G158500 Sobic007G204700 Sobic007G204700 Sobic006G158400--Sobic007G204700 Sobic003G007600 Sobic003G007600 Sobic006G158400--Sobic003G007600 Sobic010G043900 Sobic010G043900 Sobic006G158400--Sobic010G043900 Sobic001G318500 Sobic001G318500 Sobic006G158400--Sobic001G318500 Sobic006G158400--Sobic003G299300 Sobic004G295100--Sobic010G196000 Sobic004G295100--Sobic004G297900 Sobic004G295100--Sobic008G009400 Sobic004G295100--Sobic006G202600 Sobic004G295100--Sobic001G330300 Sobic004G295100--Sobic003G311800 Sobic006G235200 Sobic006G235200 Sobic004G295100--Sobic006G235200 Sobic001G300500 Sobic001G300500 Sobic004G295100--Sobic001G300500 Sobic007G090469 Sobic007G090469 Sobic004G295100--Sobic007G090469 Sobic006G050800--Sobic004G180700 Sobic006G050800--Sobic010G196000 Sobic006G050800--Sobic001G330300 Sobic006G050800--Sobic006G202600 Sobic006G050800--Sobic004G295100 Sobic004G301600 Sobic004G301600 Sobic006G050800--Sobic004G301600 Sobic006G050800--Sobic002G301900 Sobic006G050800--Sobic003G136200 Sobic010G009900 Sobic010G009900 Sobic006G050800--Sobic010G009900 Sobic010G271300 Sobic010G271300 Sobic005G067500--Sobic010G271300 Sobic005G067500--Sobic010G196000 Sobic005G067500--Sobic006G202600 Sobic005G067500--Sobic004G295100 Sobic001G508532 Sobic001G508532 Sobic005G067500--Sobic001G508532 Sobic005G067500--Sobic004G297900 Sobic005G067500--Sobic006G050800 Sobic005G067500--Sobic009G109000 Sobic002G124500 Sobic002G124500 Sobic005G067500--Sobic002G124500
Octagon: transcription factors


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