Gene annotation
Transcriptome id Sobic.002G232700.3,Sobic.002G232700.2
Synonym Sb02g027190
Functional annotation clathrin assembly protein, putative, expressed
UniProt A0A1W0W5F6
Pfam -
Panther DB PTHR22951 PTHR22951:SF18
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G40080 : ENTH/ANTH/VHS superfamily protein
RAP-DB (Rice) LOC_Os09g29300.1 : clathrin assembly protein, putative, expressed
MaizeGDB (Corn) Zm00025a047330
Brachypodium -
Barley HORVU5Hr1G069950.1 , HORVU5Hr1G069950.2 , HORVU3Hr1G064410.52 , HORVU3Hr1G058340.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G065300 expressed protein -
2 Sobic.007G157900 gibberellin receptor GID1L2, putative, expressed -
3 Sobic.003G192100 expressed protein -
4 Sobic.010G268400 eukaryotic aspartyl protease domain containing protein, expressed -
5 Sobic.009G130100 CHIT17 - Chitinase family protein precursor, expressed K01183: chitinase
6 Sobic.004G262500 lectin-like protein kinase, putative, expressed -
7 Sobic.003G228200 cytochrome P450 72A1, putative, expressed -
8 Sobic.004G308400 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
9 Sobic.007G127100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
10 Sobic.002G245100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
11 Sobic.010G192900 expressed protein -
12 Sobic.009G241700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
13 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
14 Sobic.005G018700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
15 Sobic.004G064400 class I glutamine amidotransferase, putative, expressed -
16 Sobic.001G108800 expressed protein -
17 Sobic.002G361200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@sex determination protein tasselseed-2, putative, expressed -
18 Sobic.005G093000 - -
19 Sobic.003G144800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.010G195500 reductase, putative, expressed -


Gene co-expression network
sample Sobic002G232700 Sobic002G232700 Sobic009G065300 Sobic009G065300 Sobic002G232700--Sobic009G065300 Sobic007G157900 Sobic007G157900 Sobic002G232700--Sobic007G157900 Sobic003G192100 Sobic003G192100 Sobic002G232700--Sobic003G192100 Sobic010G268400 Sobic010G268400 Sobic002G232700--Sobic010G268400 Sobic009G130100 Sobic009G130100 Sobic002G232700--Sobic009G130100 Sobic004G262500 Sobic004G262500 Sobic002G232700--Sobic004G262500 Sobic003G228200 Sobic003G228200 Sobic002G232700--Sobic003G228200 Sobic004G308400 Sobic004G308400 Sobic002G232700--Sobic004G308400 Sobic007G127100 Sobic007G127100 Sobic002G232700--Sobic007G127100 Sobic002G327300 Sobic002G327300 Sobic009G065300--Sobic002G327300 Sobic001G234800 Sobic001G234800 Sobic009G065300--Sobic001G234800 Sobic002G327100 Sobic002G327100 Sobic009G065300--Sobic002G327100 Sobic009G065300--Sobic003G228200 Sobic003G416300 Sobic003G416300 Sobic009G065300--Sobic003G416300 Sobic003G037500 Sobic003G037500 Sobic009G065300--Sobic003G037500 Sobic009G065300--Sobic007G127100 Sobic001G318500 Sobic001G318500 Sobic009G065300--Sobic001G318500 Sobic002G302500 Sobic002G302500 Sobic009G065300--Sobic002G302500 Sobic009G238900 Sobic009G238900 Sobic007G157900--Sobic009G238900 Sobic004G351500 Sobic004G351500 Sobic007G157900--Sobic004G351500 Sobic010G194100 Sobic010G194100 Sobic007G157900--Sobic010G194100 Sobic007G157900--Sobic002G232700 Sobic009G054100 Sobic009G054100 Sobic007G157900--Sobic009G054100 Sobic003G417100 Sobic003G417100 Sobic007G157900--Sobic003G417100 Sobic004G062500 Sobic004G062500 Sobic007G157900--Sobic004G062500 Sobic007G157900--Sobic004G262500 Sobic007G157900--Sobic007G127100 Sobic005G018700 Sobic005G018700 Sobic003G192100--Sobic005G018700 Sobic004G101300 Sobic004G101300 Sobic003G192100--Sobic004G101300 Sobic003G192100--Sobic003G037500 Sobic007G155000 Sobic007G155000 Sobic003G192100--Sobic007G155000 Sobic002G245100 Sobic002G245100 Sobic003G192100--Sobic002G245100 Sobic001G231700 Sobic001G231700 Sobic003G192100--Sobic001G231700 Sobic001G050100 Sobic001G050100 Sobic003G192100--Sobic001G050100 Sobic001G367600 Sobic001G367600 Sobic003G192100--Sobic001G367600 Sobic004G340900 Sobic004G340900 Sobic003G192100--Sobic004G340900 Sobic002G329000 Sobic002G329000 Sobic010G268400--Sobic002G329000 Sobic001G516600 Sobic001G516600 Sobic010G268400--Sobic001G516600 Sobic010G268400--Sobic003G192100 Sobic005G093000 Sobic005G093000 Sobic010G268400--Sobic005G093000 Sobic001G107400 Sobic001G107400 Sobic010G268400--Sobic001G107400 Sobic003G037800 Sobic003G037800 Sobic010G268400--Sobic003G037800 Sobic010G268400--Sobic002G245100 Sobic003G429000 Sobic003G429000 Sobic010G268400--Sobic003G429000 Sobic010G195500 Sobic010G195500 Sobic010G268400--Sobic010G195500 Sobic009G130100--Sobic004G262500 Sobic003G366600 Sobic003G366600 Sobic009G130100--Sobic003G366600 Sobic003G404600 Sobic003G404600 Sobic009G130100--Sobic003G404600 Sobic009G130100--Sobic003G228200 Sobic003G280400 Sobic003G280400 Sobic009G130100--Sobic003G280400 Sobic006G059700 Sobic006G059700 Sobic009G130100--Sobic006G059700 Sobic006G197100 Sobic006G197100 Sobic009G130100--Sobic006G197100 Sobic010G001000 Sobic010G001000 Sobic009G130100--Sobic010G001000 Sobic004G349125 Sobic004G349125 Sobic009G130100--Sobic004G349125 Sobic004G262500--Sobic009G130100 Sobic006G274933 Sobic006G274933 Sobic004G262500--Sobic006G274933 Sobic004G262500--Sobic003G404600 Sobic004G262500--Sobic003G417100 Sobic006G256900 Sobic006G256900 Sobic004G262500--Sobic006G256900 Sobic009G219200 Sobic009G219200 Sobic004G262500--Sobic009G219200 Sobic004G024100 Sobic004G024100 Sobic004G262500--Sobic004G024100 Sobic004G042000 Sobic004G042000 Sobic004G262500--Sobic004G042000 Sobic004G262500--Sobic006G197100 Sobic003G228200--Sobic002G327300 Sobic003G264600 Sobic003G264600 Sobic003G228200--Sobic003G264600 Sobic003G228200--Sobic001G318500 Sobic003G228200--Sobic002G327100 Sobic003G228200--Sobic003G037500 Sobic006G158400 Sobic006G158400 Sobic003G228200--Sobic006G158400 Sobic004G245100 Sobic004G245100 Sobic003G228200--Sobic004G245100 Sobic003G228200--Sobic003G192100 Sobic010G270500 Sobic010G270500 Sobic003G228200--Sobic010G270500 Sobic004G308400--Sobic010G268400 Sobic006G182100 Sobic006G182100 Sobic004G308400--Sobic006G182100 Sobic010G041600 Sobic010G041600 Sobic004G308400--Sobic010G041600 Sobic004G066600 Sobic004G066600 Sobic004G308400--Sobic004G066600 Sobic002G345300 Sobic002G345300 Sobic004G308400--Sobic002G345300 Sobic001G353600 Sobic001G353600 Sobic004G308400--Sobic001G353600 Sobic001G536500 Sobic001G536500 Sobic004G308400--Sobic001G536500 Sobic005G228000 Sobic005G228000 Sobic004G308400--Sobic005G228000 Sobic001G034700 Sobic001G034700 Sobic004G308400--Sobic001G034700 Sobic007G127100--Sobic003G416300 Sobic007G127100--Sobic002G327300 Sobic010G008400 Sobic010G008400 Sobic007G127100--Sobic010G008400 Sobic008G128900 Sobic008G128900 Sobic007G127100--Sobic008G128900 Sobic007G127100--Sobic009G065300 Sobic001G432700 Sobic001G432700 Sobic007G127100--Sobic001G432700 Sobic002G407100 Sobic002G407100 Sobic007G127100--Sobic002G407100 Sobic004G064400 Sobic004G064400 Sobic007G127100--Sobic004G064400 Sobic009G121900 Sobic009G121900 Sobic007G127100--Sobic009G121900
Octagon: transcription factors


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