Gene annotation
Transcriptome id Sobic.003G050200.1
Synonym Sb03g004370
Functional annotation embryo-specific 3, putative, expressed
UniProt C5XNE6
Pfam PF06232
Panther DB PTHR31718 PTHR31718:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G41475 : Embryo-specific protein 3, (ATS3)
RAP-DB (Rice) LOC_Os01g07780.1 : embryo-specific 3, putative, expressed
MaizeGDB (Corn) Zm00025a035727
Brachypodium KQK02933
Barley HORVU3Hr1G024470.1 , HORVU1Hr1G025440.2 , HORVU1Hr1G025440.3 , HORVU1Hr1G025440.1 , HORVU1Hr1G025440.4
Wheat TraesCS1D02G116800 , TraesCS1A02G115400
Populus -


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cDNA sequences
Sobic.003G050200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G416300 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
2 Sobic.005G168800 DJ-1 family protein, putative, expressed K18881: D-lactate dehydratase
3 Sobic.001G014000 P21-Rho-binding domain containing protein, putative, expressed -
4 Sobic.004G042000 apoptosis-inducing factor 2, putative, expressed -
5 Sobic.010G251600 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
6 Sobic.002G003800 plastocyanin-like domain containing protein, putative, expressed -
7 Sobic.010G008400 bark storage protein A precursor, putative, expressed -
8 Sobic.009G035300 expressed protein -
9 Sobic.001G432000 LYR motif containing protein, putative, expressed -
10 Sobic.001G302600 LTPL147 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
11 Sobic.001G304100 LTPL144 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
12 Sobic.001G040100 methylenetetrahydrofolate reductase, putative, expressed K00297: metF, methylenetetrahydrofolate reductase (NADPH)
13 Sobic.002G213600 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR38 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
14 Sobic.004G318700 OsSub22 - Putative Subtilisin homologue, expressed -
15 Sobic.001G416200 Responsive to hight light 41(PubMedID : 26320239)@ZOS3-09 - C2H2 zinc finger protein, expressed -
16 Sobic.004G220000 kinase, pfkB family, putative, expressed K00856: E2.7.1.20, adenosine kinase
17 Sobic.010G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@plastocyanin-like domain containing protein, putative, expressed -
18 Sobic.006G197100 DNA binding protein, putative, expressed -
19 Sobic.004G046200 sulfotransferase domain containing protein, expressed -
20 Sobic.002G418400 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed -


Gene co-expression network
sample Sobic003G050200 Sobic003G050200 Sobic003G416300 Sobic003G416300 Sobic003G050200--Sobic003G416300 Sobic005G168800 Sobic005G168800 Sobic003G050200--Sobic005G168800 Sobic001G014000 Sobic001G014000 Sobic003G050200--Sobic001G014000 Sobic004G042000 Sobic004G042000 Sobic003G050200--Sobic004G042000 Sobic010G251600 Sobic010G251600 Sobic003G050200--Sobic010G251600 Sobic002G003800 Sobic002G003800 Sobic003G050200--Sobic002G003800 Sobic010G008400 Sobic010G008400 Sobic003G050200--Sobic010G008400 Sobic009G035300 Sobic009G035300 Sobic003G050200--Sobic009G035300 Sobic001G432000 Sobic001G432000 Sobic003G050200--Sobic001G432000 Sobic003G416300--Sobic005G168800 Sobic002G327300 Sobic002G327300 Sobic003G416300--Sobic002G327300 Sobic004G046200 Sobic004G046200 Sobic003G416300--Sobic004G046200 Sobic003G416300--Sobic003G050200 Sobic002G312900 Sobic002G312900 Sobic003G416300--Sobic002G312900 Sobic007G127100 Sobic007G127100 Sobic003G416300--Sobic007G127100 Sobic003G079400 Sobic003G079400 Sobic003G416300--Sobic003G079400 Sobic008G106700 Sobic008G106700 Sobic003G416300--Sobic008G106700 Sobic001G082600 Sobic001G082600 Sobic003G416300--Sobic001G082600 Sobic005G168800--Sobic003G416300 Sobic005G168800--Sobic003G079400 Sobic005G168800--Sobic001G082600 Sobic005G168800--Sobic004G046200 Sobic005G168800--Sobic008G106700 Sobic005G168800--Sobic003G050200 Sobic009G179900 Sobic009G179900 Sobic005G168800--Sobic009G179900 Sobic001G139100 Sobic001G139100 Sobic005G168800--Sobic001G139100 Sobic001G325400 Sobic001G325400 Sobic005G168800--Sobic001G325400 Sobic003G436700 Sobic003G436700 Sobic001G014000--Sobic003G436700 Sobic003G062600 Sobic003G062600 Sobic001G014000--Sobic003G062600 Sobic001G014000--Sobic004G046200 Sobic006G044100 Sobic006G044100 Sobic001G014000--Sobic006G044100 Sobic003G418766 Sobic003G418766 Sobic001G014000--Sobic003G418766 Sobic001G014000--Sobic008G106700 Sobic006G136800 Sobic006G136800 Sobic001G014000--Sobic006G136800 Sobic010G063801 Sobic010G063801 Sobic001G014000--Sobic010G063801 Sobic009G105700 Sobic009G105700 Sobic001G014000--Sobic009G105700 Sobic006G197100 Sobic006G197100 Sobic004G042000--Sobic006G197100 Sobic004G042000--Sobic002G003800 Sobic004G349125 Sobic004G349125 Sobic004G042000--Sobic004G349125 Sobic001G416200 Sobic001G416200 Sobic004G042000--Sobic001G416200 Sobic002G213600 Sobic002G213600 Sobic004G042000--Sobic002G213600 Sobic001G302600 Sobic001G302600 Sobic004G042000--Sobic001G302600 Sobic003G311800 Sobic003G311800 Sobic004G042000--Sobic003G311800 Sobic001G304201 Sobic001G304201 Sobic004G042000--Sobic001G304201 Sobic001G264000 Sobic001G264000 Sobic004G042000--Sobic001G264000 Sobic010G206200 Sobic010G206200 Sobic010G251600--Sobic010G206200 Sobic007G019400 Sobic007G019400 Sobic010G251600--Sobic007G019400 Sobic010G251600--Sobic003G436700 Sobic007G178600 Sobic007G178600 Sobic010G251600--Sobic007G178600 Sobic009G215200 Sobic009G215200 Sobic010G251600--Sobic009G215200 Sobic006G116700 Sobic006G116700 Sobic010G251600--Sobic006G116700 Sobic003G078200 Sobic003G078200 Sobic010G251600--Sobic003G078200 Sobic001G054900 Sobic001G054900 Sobic010G251600--Sobic001G054900 Sobic004G331400 Sobic004G331400 Sobic010G251600--Sobic004G331400 Sobic002G003800--Sobic006G197100 Sobic002G003800--Sobic004G042000 Sobic002G003800--Sobic003G311800 Sobic002G003800--Sobic001G302600 Sobic001G049900 Sobic001G049900 Sobic002G003800--Sobic001G049900 Sobic002G003800--Sobic001G416200 Sobic004G310200 Sobic004G310200 Sobic002G003800--Sobic004G310200 Sobic002G003800--Sobic003G079400 Sobic001G304100 Sobic001G304100 Sobic002G003800--Sobic001G304100 Sobic002G176100 Sobic002G176100 Sobic010G008400--Sobic002G176100 Sobic010G008400--Sobic002G003800 Sobic003G319500 Sobic003G319500 Sobic010G008400--Sobic003G319500 Sobic010G008400--Sobic002G327300 Sobic010G008400--Sobic004G046200 Sobic001G500000 Sobic001G500000 Sobic010G008400--Sobic001G500000 Sobic010G085800 Sobic010G085800 Sobic010G008400--Sobic010G085800 Sobic002G017800 Sobic002G017800 Sobic010G008400--Sobic002G017800 Sobic009G111000 Sobic009G111000 Sobic010G008400--Sobic009G111000 Sobic009G035300--Sobic001G264000 Sobic009G035300--Sobic004G042000 Sobic009G035300--Sobic001G416200 Sobic001G161500 Sobic001G161500 Sobic009G035300--Sobic001G161500 Sobic009G035300--Sobic004G349125 Sobic009G035300--Sobic001G302600 Sobic009G035300--Sobic006G197100 Sobic009G035300--Sobic001G304201 Sobic009G035300--Sobic002G003800 Sobic001G432000--Sobic010G251600 Sobic005G168100 Sobic005G168100 Sobic001G432000--Sobic005G168100 Sobic001G304400 Sobic001G304400 Sobic001G432000--Sobic001G304400 Sobic009G232900 Sobic009G232900 Sobic001G432000--Sobic009G232900 Sobic001G432000--Sobic007G019400 Sobic003G150000 Sobic003G150000 Sobic001G432000--Sobic003G150000 Sobic001G432000--Sobic001G054900 Sobic001G432000--Sobic010G206200 Sobic006G156000 Sobic006G156000 Sobic001G432000--Sobic006G156000
Octagon: transcription factors


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