Gene annotation
Transcriptome id Sobic.001G226800.1
Synonym Sb01g019870
Functional annotation zinc finger family protein, putative, expressed
UniProt C5WZD8
Pfam PF14624 PF13519
Panther DB PTHR10579 PTHR10579:SF65
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G60710 : Zinc finger (C3HC4-type RING finger) family protein
RAP-DB (Rice) LOC_Os10g32760.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a006669 , Zm00025a000570
Brachypodium KQJ96994 , PNT78231
Barley HORVU4Hr1G086310.1 , HORVU1Hr1G038870.1 , HORVU1Hr1G092690.1
Wheat TraesCS4D02G351600 , TraesCS4B02G344200 , TraesCS2B02G515000 , TraesCS7A02G423300 , TraesCS3A02G393700 , TraesCS4D02G339300 , TraesCS1D02G433500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G095600 NBS-LRR type disease resistance protein, putative, expressed -
2 Sobic.006G131600 OsCML22 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
3 Sobic.002G373001 - -
4 Sobic.004G302200 "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsSAUR11 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
5 Sobic.003G110200 NADP-dependent oxidoreductase, putative, expressed K07119: PTGR3, prostaglandin reductase 3
6 Sobic.003G102200 helix-loop-helix DNA-binding domain containing protein, expressed -
7 Sobic.001G449700 highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
8 Sobic.002G092801 - -
9 Sobic.002G034500 ERD4 protein, putative, expressed -
10 Sobic.009G121900 Annexin arabidopsis 4(PubMedID : 26320239)@annexin, putative, expressed -
11 Sobic.002G403300 expressed protein -
12 Sobic.006G009000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
13 Sobic.001G234800 inorganic phosphate transporter, putative, expressed K08176: MFS transporter, PHS family, inorganic phosphate transporter
14 Sobic.001G091600 expressed protein -
15 Sobic.001G061101 - -
16 Sobic.009G065300 expressed protein -
17 Sobic.010G267600 similar to Putative senescence-associated protein(PubMedID : 29862293)@senescence-associated protein, putative, expressed -
18 Sobic.003G360200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@homeobox domain containing protein, expressed -
19 Sobic.005G109000 cytochrome P450, putative, expressed -
20 Sobic.002G407100 expressed protein -


Gene co-expression network
sample Sobic001G226800 Sobic001G226800 Sobic004G095600 Sobic004G095600 Sobic001G226800--Sobic004G095600 Sobic006G131600 Sobic006G131600 Sobic001G226800--Sobic006G131600 Sobic002G373001 Sobic002G373001 Sobic001G226800--Sobic002G373001 Sobic004G302200 Sobic004G302200 Sobic001G226800--Sobic004G302200 Sobic003G110200 Sobic003G110200 Sobic001G226800--Sobic003G110200 Sobic003G102200 Sobic003G102200 Sobic001G226800--Sobic003G102200 Sobic001G449700 Sobic001G449700 Sobic001G226800--Sobic001G449700 Sobic002G092801 Sobic002G092801 Sobic001G226800--Sobic002G092801 Sobic002G034500 Sobic002G034500 Sobic001G226800--Sobic002G034500 Sobic004G095600--Sobic002G373001 Sobic004G095600--Sobic001G226800 Sobic004G095600--Sobic006G131600 Sobic004G095600--Sobic002G034500 Sobic004G095600--Sobic003G102200 Sobic004G095600--Sobic002G092801 Sobic004G095600--Sobic004G302200 Sobic007G165701 Sobic007G165701 Sobic004G095600--Sobic007G165701 Sobic003G262100 Sobic003G262100 Sobic004G095600--Sobic003G262100 Sobic006G131600--Sobic004G095600 Sobic006G131600--Sobic002G373001 Sobic010G267600 Sobic010G267600 Sobic006G131600--Sobic010G267600 Sobic006G131600--Sobic002G092801 Sobic006G131600--Sobic003G110200 Sobic006G131600--Sobic001G226800 Sobic003G082600 Sobic003G082600 Sobic006G131600--Sobic003G082600 Sobic003G202200 Sobic003G202200 Sobic006G131600--Sobic003G202200 Sobic006G131600--Sobic002G034500 Sobic002G373001--Sobic001G449700 Sobic002G373001--Sobic002G034500 Sobic003G021500 Sobic003G021500 Sobic002G373001--Sobic003G021500 Sobic002G319500 Sobic002G319500 Sobic002G373001--Sobic002G319500 Sobic002G373001--Sobic003G102200 Sobic002G070200 Sobic002G070200 Sobic002G373001--Sobic002G070200 Sobic002G082600 Sobic002G082600 Sobic002G373001--Sobic002G082600 Sobic002G333400 Sobic002G333400 Sobic002G373001--Sobic002G333400 Sobic002G373001--Sobic004G095600 Sobic010G136000 Sobic010G136000 Sobic004G302200--Sobic010G136000 Sobic003G320800 Sobic003G320800 Sobic004G302200--Sobic003G320800 Sobic010G268400 Sobic010G268400 Sobic004G302200--Sobic010G268400 Sobic001G432700 Sobic001G432700 Sobic004G302200--Sobic001G432700 Sobic003G135700 Sobic003G135700 Sobic004G302200--Sobic003G135700 Sobic002G407100 Sobic002G407100 Sobic004G302200--Sobic002G407100 Sobic004G302200--Sobic002G319500 Sobic004G302200--Sobic002G373001 Sobic009G065300 Sobic009G065300 Sobic004G302200--Sobic009G065300 Sobic003G110200--Sobic001G449700 Sobic003G110200--Sobic003G202200 Sobic007G149300 Sobic007G149300 Sobic003G110200--Sobic007G149300 Sobic003G110200--Sobic002G092801 Sobic003G110200--Sobic003G102200 Sobic001G383700 Sobic001G383700 Sobic003G110200--Sobic001G383700 Sobic001G481100 Sobic001G481100 Sobic003G110200--Sobic001G481100 Sobic003G110200--Sobic003G021500 Sobic005G186100 Sobic005G186100 Sobic003G110200--Sobic005G186100 Sobic003G102200--Sobic001G449700 Sobic003G102200--Sobic003G110200 Sobic001G195100 Sobic001G195100 Sobic003G102200--Sobic001G195100 Sobic001G259700 Sobic001G259700 Sobic003G102200--Sobic001G259700 Sobic003G102200--Sobic001G383700 Sobic003G102200--Sobic007G149300 Sobic002G342400 Sobic002G342400 Sobic003G102200--Sobic002G342400 Sobic003G102200--Sobic002G373001 Sobic003G250600 Sobic003G250600 Sobic003G102200--Sobic003G250600 Sobic001G449700--Sobic001G383700 Sobic001G449700--Sobic003G202200 Sobic001G449700--Sobic003G110200 Sobic001G449700--Sobic007G149300 Sobic001G449700--Sobic003G021500 Sobic009G036000 Sobic009G036000 Sobic001G449700--Sobic009G036000 Sobic001G449700--Sobic002G333400 Sobic001G449700--Sobic001G259700 Sobic001G449700--Sobic005G186100 Sobic002G092801--Sobic003G110200 Sobic002G092801--Sobic001G449700 Sobic002G092801--Sobic003G102200 Sobic002G092801--Sobic003G021500 Sobic002G092801--Sobic001G383700 Sobic007G123300 Sobic007G123300 Sobic002G092801--Sobic007G123300 Sobic002G092801--Sobic003G202200 Sobic002G092801--Sobic002G034500 Sobic002G092801--Sobic007G149300 Sobic002G034500--Sobic003G021500 Sobic002G034500--Sobic002G373001 Sobic002G034500--Sobic002G082600 Sobic005G228000 Sobic005G228000 Sobic002G034500--Sobic005G228000 Sobic001G234300 Sobic001G234300 Sobic002G034500--Sobic001G234300 Sobic001G019900 Sobic001G019900 Sobic002G034500--Sobic001G019900 Sobic002G034500--Sobic001G449700 Sobic002G034500--Sobic002G092801 Sobic002G312400 Sobic002G312400 Sobic002G034500--Sobic002G312400
Octagon: transcription factors


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