Gene annotation
Transcriptome id Sobic.005G142300.1
Synonym Sb05g020760
Functional annotation expressed protein
UniProt A0A1Z5RIV6
Pfam PF13920
Panther DB PTHR10044 PTHR10044:SF107
NCBI CDD KOG1100; Predicted E3 ubiquitin ligase
KEGG Orthology K19042; E3 ubiquitin-protein ligase BOI and related proteins
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G60610 : SBP (S-ribonuclease binding protein) family protein
RAP-DB (Rice) LOC_Os11g34080.1 : expressed protein
MaizeGDB (Corn) Zm00025a055972 , Zm00025a020494 , Zm00025a033559
Brachypodium KQJ99663
Barley -
Wheat TraesCS4A02G293700
Populus -


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cDNA sequences
Sobic.005G142300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G042000 apoptosis-inducing factor 2, putative, expressed -
2 Sobic.001G111000 glutamate decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
3 Sobic.003G119500 expressed protein -
4 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
5 Sobic.010G052200 "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@S-adenosyl methionine (SAM)-dependent O-methyltransferase(PubMedID : 30289910)@enzyme involved in monolignol synthesis(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase(PubMedID : 27457122)@caffeoyl-CoA O-methyltransferase, putative, expressed K00588: caffeoyl-CoA O-methyltransferase
6 Sobic.003G311800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@xylosyltransferase, putative, expressed -
7 Sobic.009G109000 expressed protein -
8 Sobic.009G232100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed -
9 Sobic.010G028200 GDP-mannose 4,6 dehydratase 2, putative, expressed K01711: gmd, GDPmannose 4,6-dehydratase
10 Sobic.004G348800 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
11 Sobic.006G274933 - -
12 Sobic.002G003800 plastocyanin-like domain containing protein, putative, expressed -
13 Sobic.006G156000 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
14 Sobic.003G160700 RALFL8 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
15 Sobic.010G071400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.004G262500 lectin-like protein kinase, putative, expressed -
17 Sobic.009G141100 cytochrome P450, putative, expressed -
18 Sobic.003G219800 transferase family protein, putative, expressed -
19 Sobic.006G282300 - -
20 Sobic.002G387900 expressed protein -


Gene co-expression network
sample Sobic005G142300 Sobic005G142300 Sobic004G042000 Sobic004G042000 Sobic005G142300--Sobic004G042000 Sobic001G111000 Sobic001G111000 Sobic005G142300--Sobic001G111000 Sobic003G119500 Sobic003G119500 Sobic005G142300--Sobic003G119500 Sobic004G212300 Sobic004G212300 Sobic005G142300--Sobic004G212300 Sobic010G052200 Sobic010G052200 Sobic005G142300--Sobic010G052200 Sobic003G311800 Sobic003G311800 Sobic005G142300--Sobic003G311800 Sobic009G109000 Sobic009G109000 Sobic005G142300--Sobic009G109000 Sobic009G232100 Sobic009G232100 Sobic005G142300--Sobic009G232100 Sobic010G028200 Sobic010G028200 Sobic005G142300--Sobic010G028200 Sobic006G197100 Sobic006G197100 Sobic004G042000--Sobic006G197100 Sobic002G003800 Sobic002G003800 Sobic004G042000--Sobic002G003800 Sobic004G349125 Sobic004G349125 Sobic004G042000--Sobic004G349125 Sobic001G416200 Sobic001G416200 Sobic004G042000--Sobic001G416200 Sobic002G213600 Sobic002G213600 Sobic004G042000--Sobic002G213600 Sobic001G302600 Sobic001G302600 Sobic004G042000--Sobic001G302600 Sobic004G042000--Sobic003G311800 Sobic001G304201 Sobic001G304201 Sobic004G042000--Sobic001G304201 Sobic001G264000 Sobic001G264000 Sobic004G042000--Sobic001G264000 Sobic006G057200 Sobic006G057200 Sobic001G111000--Sobic006G057200 Sobic003G016100 Sobic003G016100 Sobic001G111000--Sobic003G016100 Sobic001G111000--Sobic004G042000 Sobic001G361600 Sobic001G361600 Sobic001G111000--Sobic001G361600 Sobic003G219800 Sobic003G219800 Sobic001G111000--Sobic003G219800 Sobic001G111000--Sobic005G142300 Sobic003G264600 Sobic003G264600 Sobic001G111000--Sobic003G264600 Sobic003G160700 Sobic003G160700 Sobic001G111000--Sobic003G160700 Sobic003G078200 Sobic003G078200 Sobic001G111000--Sobic003G078200 Sobic010G212500 Sobic010G212500 Sobic003G119500--Sobic010G212500 Sobic003G119500--Sobic003G311800 Sobic003G119500--Sobic002G003800 Sobic003G119500--Sobic009G109000 Sobic001G049900 Sobic001G049900 Sobic003G119500--Sobic001G049900 Sobic006G274933 Sobic006G274933 Sobic003G119500--Sobic006G274933 Sobic004G348800 Sobic004G348800 Sobic003G119500--Sobic004G348800 Sobic004G297900 Sobic004G297900 Sobic003G119500--Sobic004G297900 Sobic010G085800 Sobic010G085800 Sobic003G119500--Sobic010G085800 Sobic004G212300--Sobic010G052200 Sobic001G532200 Sobic001G532200 Sobic004G212300--Sobic001G532200 Sobic004G212300--Sobic003G119500 Sobic004G062500 Sobic004G062500 Sobic004G212300--Sobic004G062500 Sobic001G084100 Sobic001G084100 Sobic004G212300--Sobic001G084100 Sobic001G516600 Sobic001G516600 Sobic004G212300--Sobic001G516600 Sobic006G156000 Sobic006G156000 Sobic004G212300--Sobic006G156000 Sobic002G040600 Sobic002G040600 Sobic004G212300--Sobic002G040600 Sobic010G252500 Sobic010G252500 Sobic004G212300--Sobic010G252500 Sobic010G052200--Sobic004G212300 Sobic010G052200--Sobic001G084100 Sobic010G052200--Sobic001G532200 Sobic002G128800 Sobic002G128800 Sobic010G052200--Sobic002G128800 Sobic007G124301 Sobic007G124301 Sobic010G052200--Sobic007G124301 Sobic010G252401 Sobic010G252401 Sobic010G052200--Sobic010G252401 Sobic003G037800 Sobic003G037800 Sobic010G052200--Sobic003G037800 Sobic005G113300 Sobic005G113300 Sobic010G052200--Sobic005G113300 Sobic010G052200--Sobic006G156000 Sobic003G311800--Sobic004G297900 Sobic003G311800--Sobic002G003800 Sobic003G311800--Sobic001G049900 Sobic003G311800--Sobic009G109000 Sobic003G311800--Sobic006G197100 Sobic003G311800--Sobic006G274933 Sobic002G183700 Sobic002G183700 Sobic003G311800--Sobic002G183700 Sobic007G090469 Sobic007G090469 Sobic003G311800--Sobic007G090469 Sobic003G311800--Sobic004G042000 Sobic009G109000--Sobic003G311800 Sobic009G109000--Sobic004G297900 Sobic009G109000--Sobic001G049900 Sobic008G055100 Sobic008G055100 Sobic009G109000--Sobic008G055100 Sobic003G053400 Sobic003G053400 Sobic009G109000--Sobic003G053400 Sobic003G411200 Sobic003G411200 Sobic009G109000--Sobic003G411200 Sobic009G109000--Sobic004G348800 Sobic008G009400 Sobic008G009400 Sobic009G109000--Sobic008G009400 Sobic001G430100 Sobic001G430100 Sobic009G109000--Sobic001G430100 Sobic009G088900 Sobic009G088900 Sobic009G232100--Sobic009G088900 Sobic009G232100--Sobic001G049900 Sobic009G188000 Sobic009G188000 Sobic009G232100--Sobic009G188000 Sobic001G310300 Sobic001G310300 Sobic009G232100--Sobic001G310300 Sobic009G232100--Sobic010G085800 Sobic009G232100--Sobic001G361600 Sobic002G396400 Sobic002G396400 Sobic009G232100--Sobic002G396400 Sobic001G304100 Sobic001G304100 Sobic009G232100--Sobic001G304100 Sobic009G232100--Sobic009G109000 Sobic003G209000 Sobic003G209000 Sobic010G028200--Sobic003G209000 Sobic010G065900 Sobic010G065900 Sobic010G028200--Sobic010G065900 Sobic002G418400 Sobic002G418400 Sobic010G028200--Sobic002G418400 Sobic001G404800 Sobic001G404800 Sobic010G028200--Sobic001G404800 Sobic003G436700 Sobic003G436700 Sobic010G028200--Sobic003G436700 Sobic004G055700 Sobic004G055700 Sobic010G028200--Sobic004G055700 Sobic010G028200--Sobic003G160700 Sobic004G008400 Sobic004G008400 Sobic010G028200--Sobic004G008400 Sobic002G136700 Sobic002G136700 Sobic010G028200--Sobic002G136700
Octagon: transcription factors


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