Gene annotation
Transcriptome id Sobic.002G393600.1
Synonym Sb02g040890
Functional annotation GDSL-like lipase/acylhydrolase, putative, expressed
UniProt A0A1W0W7H7
Pfam PF00657
Panther DB PTHR22835 PTHR22835:SF235
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016788; hydrolase activity, acting on ester bonds


Orthologs (automatic annotation)
TAIR AT1G28600 : GDSL-like Lipase/Acylhydrolase superfamily protein
RAP-DB (Rice) LOC_Os07g44780.1 : GDSL-like lipase/acylhydrolase, putative, expressed
MaizeGDB (Corn) Zm00025a008991 , Zm00025a048945
Brachypodium KQK07951 , KQK14967
Barley HORVU3Hr1G058440.12 , HORVU3Hr1G058440.13 , HORVU3Hr1G058440.10 , HORVU3Hr1G058440.11 , HORVU3Hr1G058440.16 , HORVU3Hr1G058440.17 , HORVU3Hr1G058440.14 , HORVU3Hr1G058440.19 , HORVU2Hr1G025800.5 , HORVU2Hr1G025800.4 , HORVU2Hr1G025800.1 , HORVU2Hr1G025800.3 , HORVU2Hr1G025800.2 , HORVU3Hr1G058440.9 , HORVU3Hr1G058440.1 , HORVU3Hr1G058440.2 , HORVU3Hr1G058440.3 , HORVU3Hr1G058440.4 , HORVU3Hr1G058440.5 , HORVU3Hr1G058440.6 , HORVU3Hr1G058440.7 , HORVU2Hr1G025810.2 , HORVU2Hr1G025810.1 , HORVU3Hr1G058440.20 , HORVU2Hr1G025860.3 , HORVU2Hr1G025860.2 , HORVU2Hr1G025860.1 , HORVU3Hr1G066310.4 , HORVU3Hr1G066310.1 , HORVU3Hr1G066310.3 , HORVU3Hr1G066310.2 , HORVU3Hr1G010920.3 , HORVU3Hr1G010920.2 , HORVU3Hr1G010920.1 , HORVU3Hr1G010920.4
Wheat TraesCS3B02G285400 , TraesCS3D02G236100 , TraesCS3A02G057100 , TraesCS2B02G170900 , TraesCS4A02G341500 , TraesCS2D02G150100 , TraesCS5A02G394300 , TraesCS3B02G070100 , TraesCS2B02G170800 , TraesCS3B02G264900 , TraesCS2D02G150000 , TraesCS5B02G533100 , TraesCS2D02G150200 , TraesCS2D02G149900 , TraesCS3D02G056800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G074200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@- -
2 Sobic.002G338250 - -
3 Sobic.004G117600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@WRKY39, expressed -
4 Sobic.008G111500 membrane associated DUF588 domain containing protein, putative, expressed -
5 Sobic.001G488000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.009G131400 basic 7S globulin precursor, putative, expressed -
7 Sobic.003G146400 anther-specific protein SF18 precursor, putative, expressed -
8 Sobic.006G198800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@pathogenesis-related Bet v I family protein, putative, expressed -
9 Sobic.006G136800 "shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
10 Sobic.009G216800 polyprenyl synthetase, putative, expressed K00787: farnesyl diphosphate synthase
11 Sobic.001G447100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ATP8, putative, expressed -
12 Sobic.002G387900 expressed protein -
13 Sobic.004G067900 expressed protein -
14 Sobic.009G154200 MYB family transcription factor, putative, expressed -
15 Sobic.009G232800 zinc finger, C3HC4 type domain containing protein, expressed K19041: E3 ubiquitin-protein ligase RNF38/44
16 Sobic.002G290500 armadillo/beta-catenin repeat protein-related, putative, expressed -
17 Sobic.002G251900 chaperone protein dnaJ 10, putative, expressed -
18 Sobic.001G106400 serine esterase family protein, putative, expressed K10606: FANCL, E3 ubiquitin-protein ligase FANCL
19 Sobic.009G232900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
20 Sobic.008G186600 ergosterol biosynthetic protein 28, putative, expressed -


Gene co-expression network
sample Sobic002G393600 Sobic002G393600 Sobic007G074200 Sobic007G074200 Sobic002G393600--Sobic007G074200 Sobic002G338250 Sobic002G338250 Sobic002G393600--Sobic002G338250 Sobic004G117600 Sobic004G117600 Sobic002G393600--Sobic004G117600 Sobic008G111500 Sobic008G111500 Sobic002G393600--Sobic008G111500 Sobic001G488000 Sobic001G488000 Sobic002G393600--Sobic001G488000 Sobic009G131400 Sobic009G131400 Sobic002G393600--Sobic009G131400 Sobic003G146400 Sobic003G146400 Sobic002G393600--Sobic003G146400 Sobic006G198800 Sobic006G198800 Sobic002G393600--Sobic006G198800 Sobic006G136800 Sobic006G136800 Sobic002G393600--Sobic006G136800 Sobic007G074200--Sobic008G111500 Sobic007G074200--Sobic002G393600 Sobic007G074200--Sobic002G338250 Sobic001G447100 Sobic001G447100 Sobic007G074200--Sobic001G447100 Sobic007G074200--Sobic004G117600 Sobic007G074200--Sobic009G131400 Sobic007G074200--Sobic003G146400 Sobic003G349700 Sobic003G349700 Sobic007G074200--Sobic003G349700 Sobic009G154200 Sobic009G154200 Sobic007G074200--Sobic009G154200 Sobic002G338250--Sobic007G074200 Sobic002G338250--Sobic004G117600 Sobic002G338250--Sobic009G154200 Sobic002G338250--Sobic002G393600 Sobic002G338250--Sobic008G111500 Sobic001G389900 Sobic001G389900 Sobic002G338250--Sobic001G389900 Sobic002G338250--Sobic003G349700 Sobic002G338250--Sobic001G447100 Sobic002G338250--Sobic006G136800 Sobic004G117600--Sobic007G074200 Sobic004G117600--Sobic002G338250 Sobic004G117600--Sobic009G154200 Sobic004G117600--Sobic008G111500 Sobic004G117600--Sobic002G393600 Sobic009G159400 Sobic009G159400 Sobic004G117600--Sobic009G159400 Sobic004G301300 Sobic004G301300 Sobic004G117600--Sobic004G301300 Sobic002G239200 Sobic002G239200 Sobic004G117600--Sobic002G239200 Sobic004G117600--Sobic006G136800 Sobic008G111500--Sobic007G074200 Sobic008G111500--Sobic009G131400 Sobic008G111500--Sobic001G447100 Sobic006G100200 Sobic006G100200 Sobic008G111500--Sobic006G100200 Sobic008G111500--Sobic003G349700 Sobic008G111500--Sobic004G117600 Sobic008G111500--Sobic002G338250 Sobic001G100600 Sobic001G100600 Sobic008G111500--Sobic001G100600 Sobic008G111500--Sobic002G393600 Sobic003G295000 Sobic003G295000 Sobic001G488000--Sobic003G295000 Sobic001G488000--Sobic007G074200 Sobic001G488000--Sobic002G393600 Sobic009G205100 Sobic009G205100 Sobic001G488000--Sobic009G205100 Sobic001G488000--Sobic001G447100 Sobic003G067700 Sobic003G067700 Sobic001G488000--Sobic003G067700 Sobic001G488000--Sobic002G338250 Sobic001G488000--Sobic008G111500 Sobic001G488000--Sobic009G131400 Sobic009G131400--Sobic008G111500 Sobic009G131400--Sobic007G074200 Sobic009G131400--Sobic001G447100 Sobic004G024200 Sobic004G024200 Sobic009G131400--Sobic004G024200 Sobic009G131400--Sobic003G349700 Sobic006G207100 Sobic006G207100 Sobic009G131400--Sobic006G207100 Sobic009G131400--Sobic003G146400 Sobic004G086400 Sobic004G086400 Sobic009G131400--Sobic004G086400 Sobic007G176600 Sobic007G176600 Sobic009G131400--Sobic007G176600 Sobic009G179500 Sobic009G179500 Sobic003G146400--Sobic009G179500 Sobic009G184000 Sobic009G184000 Sobic003G146400--Sobic009G184000 Sobic004G306300 Sobic004G306300 Sobic003G146400--Sobic004G306300 Sobic003G146400--Sobic007G074200 Sobic003G432700 Sobic003G432700 Sobic003G146400--Sobic003G432700 Sobic006G007900 Sobic006G007900 Sobic003G146400--Sobic006G007900 Sobic006G158200 Sobic006G158200 Sobic003G146400--Sobic006G158200 Sobic001G079300 Sobic001G079300 Sobic003G146400--Sobic001G079300 Sobic006G235100 Sobic006G235100 Sobic003G146400--Sobic006G235100 Sobic006G198800--Sobic007G074200 Sobic006G198800--Sobic002G393600 Sobic002G294000 Sobic002G294000 Sobic006G198800--Sobic002G294000 Sobic006G198800--Sobic003G146400 Sobic005G086600 Sobic005G086600 Sobic006G198800--Sobic005G086600 Sobic004G161751 Sobic004G161751 Sobic006G198800--Sobic004G161751 Sobic006G008000 Sobic006G008000 Sobic006G198800--Sobic006G008000 Sobic006G198800--Sobic006G235100 Sobic009G171500 Sobic009G171500 Sobic006G198800--Sobic009G171500 Sobic004G046200 Sobic004G046200 Sobic006G136800--Sobic004G046200 Sobic002G081600 Sobic002G081600 Sobic006G136800--Sobic002G081600 Sobic003G436700 Sobic003G436700 Sobic006G136800--Sobic003G436700 Sobic001G295200 Sobic001G295200 Sobic006G136800--Sobic001G295200 Sobic001G036900 Sobic001G036900 Sobic006G136800--Sobic001G036900 Sobic004G205100 Sobic004G205100 Sobic006G136800--Sobic004G205100 Sobic004G340900 Sobic004G340900 Sobic006G136800--Sobic004G340900 Sobic001G389000 Sobic001G389000 Sobic006G136800--Sobic001G389000 Sobic001G500000 Sobic001G500000 Sobic006G136800--Sobic001G500000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.