Gene annotation
Transcriptome id Sobic.001G488000.1
Synonym Sb01g045660
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5WVX5
Pfam -
Panther DB PTHR36067 PTHR36067:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os03g07590.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.001G488000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G295000 DUF584 domain containing protein, putative, expressed -
2 Sobic.007G074200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@- -
3 Sobic.002G393600 GDSL-like lipase/acylhydrolase, putative, expressed -
4 Sobic.009G205100 zinc finger/CCCH transcription factor, putative, expressed -
5 Sobic.001G447100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ATP8, putative, expressed -
6 Sobic.003G067700 expressed protein -
7 Sobic.002G338250 - -
8 Sobic.008G111500 membrane associated DUF588 domain containing protein, putative, expressed -
9 Sobic.009G131400 basic 7S globulin precursor, putative, expressed -
10 Sobic.004G067900 expressed protein -
11 Sobic.004G024200 similar to Bax inhibitor 1(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@transmembrane BAX inhibitor motif-containing protein, putative, expressed -
12 Sobic.003G062200 transcription factor HBP-1b, putative, expressed -
13 Sobic.003G146400 anther-specific protein SF18 precursor, putative, expressed -
14 Sobic.004G117600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@WRKY39, expressed -
15 Sobic.002G239200 zinc finger, C3HC4 type domain containing protein, expressed K16285: RING/U-box domain-containing protein
16 Sobic.009G179500 expressed protein -
17 Sobic.009G149800 subtilisin N-terminal Region family protein, expressed -
18 Sobic.003G349700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS1-15 - C2H2 zinc finger protein, expressed -
19 Sobic.009G232800 zinc finger, C3HC4 type domain containing protein, expressed K19041: E3 ubiquitin-protein ligase RNF38/44
20 Sobic.001G076100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G488000 Sobic001G488000 Sobic003G295000 Sobic003G295000 Sobic001G488000--Sobic003G295000 Sobic007G074200 Sobic007G074200 Sobic001G488000--Sobic007G074200 Sobic002G393600 Sobic002G393600 Sobic001G488000--Sobic002G393600 Sobic009G205100 Sobic009G205100 Sobic001G488000--Sobic009G205100 Sobic001G447100 Sobic001G447100 Sobic001G488000--Sobic001G447100 Sobic003G067700 Sobic003G067700 Sobic001G488000--Sobic003G067700 Sobic002G338250 Sobic002G338250 Sobic001G488000--Sobic002G338250 Sobic008G111500 Sobic008G111500 Sobic001G488000--Sobic008G111500 Sobic009G131400 Sobic009G131400 Sobic001G488000--Sobic009G131400 Sobic003G295000--Sobic001G488000 Sobic009G199300 Sobic009G199300 Sobic003G295000--Sobic009G199300 Sobic004G067900 Sobic004G067900 Sobic003G295000--Sobic004G067900 Sobic003G062200 Sobic003G062200 Sobic003G295000--Sobic003G062200 Sobic001G050900 Sobic001G050900 Sobic003G295000--Sobic001G050900 Sobic002G308400 Sobic002G308400 Sobic003G295000--Sobic002G308400 Sobic010G212000 Sobic010G212000 Sobic003G295000--Sobic010G212000 Sobic007G194100 Sobic007G194100 Sobic003G295000--Sobic007G194100 Sobic010G196800 Sobic010G196800 Sobic003G295000--Sobic010G196800 Sobic007G074200--Sobic008G111500 Sobic007G074200--Sobic002G393600 Sobic007G074200--Sobic002G338250 Sobic007G074200--Sobic001G447100 Sobic004G117600 Sobic004G117600 Sobic007G074200--Sobic004G117600 Sobic007G074200--Sobic009G131400 Sobic003G146400 Sobic003G146400 Sobic007G074200--Sobic003G146400 Sobic003G349700 Sobic003G349700 Sobic007G074200--Sobic003G349700 Sobic009G154200 Sobic009G154200 Sobic007G074200--Sobic009G154200 Sobic002G393600--Sobic007G074200 Sobic002G393600--Sobic002G338250 Sobic002G393600--Sobic004G117600 Sobic002G393600--Sobic008G111500 Sobic002G393600--Sobic001G488000 Sobic002G393600--Sobic009G131400 Sobic002G393600--Sobic003G146400 Sobic006G198800 Sobic006G198800 Sobic002G393600--Sobic006G198800 Sobic006G136800 Sobic006G136800 Sobic002G393600--Sobic006G136800 Sobic003G247800 Sobic003G247800 Sobic009G205100--Sobic003G247800 Sobic001G076100 Sobic001G076100 Sobic009G205100--Sobic001G076100 Sobic009G205100--Sobic001G488000 Sobic003G353300 Sobic003G353300 Sobic009G205100--Sobic003G353300 Sobic003G123600 Sobic003G123600 Sobic009G205100--Sobic003G123600 Sobic008G118700 Sobic008G118700 Sobic009G205100--Sobic008G118700 Sobic003G148600 Sobic003G148600 Sobic009G205100--Sobic003G148600 Sobic001G149800 Sobic001G149800 Sobic009G205100--Sobic001G149800 Sobic001G443800 Sobic001G443800 Sobic009G205100--Sobic001G443800 Sobic001G447100--Sobic003G349700 Sobic004G024200 Sobic004G024200 Sobic001G447100--Sobic004G024200 Sobic007G176600 Sobic007G176600 Sobic001G447100--Sobic007G176600 Sobic001G447100--Sobic008G111500 Sobic001G447100--Sobic007G074200 Sobic001G100600 Sobic001G100600 Sobic001G447100--Sobic001G100600 Sobic001G477300 Sobic001G477300 Sobic001G447100--Sobic001G477300 Sobic001G447100--Sobic009G131400 Sobic003G041200 Sobic003G041200 Sobic001G447100--Sobic003G041200 Sobic003G067800 Sobic003G067800 Sobic003G067700--Sobic003G067800 Sobic003G244900 Sobic003G244900 Sobic003G067700--Sobic003G244900 Sobic003G067700--Sobic001G488000 Sobic003G067700--Sobic009G131400 Sobic007G034600 Sobic007G034600 Sobic003G067700--Sobic007G034600 Sobic003G067700--Sobic007G176600 Sobic003G067700--Sobic001G447100 Sobic003G002501 Sobic003G002501 Sobic003G067700--Sobic003G002501 Sobic003G067700--Sobic004G067900 Sobic002G338250--Sobic007G074200 Sobic002G338250--Sobic004G117600 Sobic002G338250--Sobic009G154200 Sobic002G338250--Sobic002G393600 Sobic002G338250--Sobic008G111500 Sobic001G389900 Sobic001G389900 Sobic002G338250--Sobic001G389900 Sobic002G338250--Sobic003G349700 Sobic002G338250--Sobic001G447100 Sobic002G338250--Sobic006G136800 Sobic008G111500--Sobic007G074200 Sobic008G111500--Sobic009G131400 Sobic008G111500--Sobic001G447100 Sobic006G100200 Sobic006G100200 Sobic008G111500--Sobic006G100200 Sobic008G111500--Sobic003G349700 Sobic008G111500--Sobic004G117600 Sobic008G111500--Sobic002G338250 Sobic008G111500--Sobic001G100600 Sobic008G111500--Sobic002G393600 Sobic009G131400--Sobic008G111500 Sobic009G131400--Sobic007G074200 Sobic009G131400--Sobic001G447100 Sobic009G131400--Sobic004G024200 Sobic009G131400--Sobic003G349700 Sobic006G207100 Sobic006G207100 Sobic009G131400--Sobic006G207100 Sobic009G131400--Sobic003G146400 Sobic004G086400 Sobic004G086400 Sobic009G131400--Sobic004G086400 Sobic009G131400--Sobic007G176600
Octagon: transcription factors


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