Gene annotation
Transcriptome id Sobic.002G239200.2
Synonym Sb02g027680, XERICO
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1W0W5P1
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF184
NCBI CDD -
KEGG Orthology K16285; RING/U-box domain-containing protein
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G04240 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os09g30160.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a004975 , Zm00025a014158 , Zm00025a047385
Brachypodium KQJ98784 , KQJ90655
Barley HORVU5Hr1G071280.1
Wheat -
Populus -


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cDNA sequences
Sobic.002G239200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G165100 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
2 Sobic.001G052300 expressed protein -
3 Sobic.003G063200 uncharacterized Cys-rich domain containing protein, putative, expressed -
4 Sobic.002G359300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ZOS7-07 - C2H2 zinc finger protein, expressed -
5 Sobic.005G028700 peflin, putative, expressed K13448: calcium-binding protein CML
6 Sobic.004G247200 erwinia induced protein 2, putative, expressed -
7 Sobic.004G117600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@WRKY39, expressed -
8 Sobic.009G255500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
9 Sobic.009G179500 expressed protein -
10 Sobic.009G183300 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
11 Sobic.002G036100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed -
12 Sobic.003G324400 Not investigated(PubMedID : 23766026)@Contribute to rice salt tolerance under a salt inducible abscisic acid 2 (ABA2) promoter(PubMedID : 28393269)@AP2 domain containing protein, expressed -
13 Sobic.007G074200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@- -
14 Sobic.001G447100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ATP8, putative, expressed -
15 Sobic.009G129000 E3 ubiquitin-protein ligase MGRN1, putative, expressed -
16 Sobic.001G040200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAC domain-containing protein 67, putative, expressed -
17 Sobic.002G036150 - -
18 Sobic.001G477300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GRAM domain containing protein, expressed -
19 Sobic.004G259600 slowmo homolog, putative, expressed -
20 Sobic.001G538866 - -


Gene co-expression network
sample Sobic002G239200 Sobic002G239200 Sobic006G165100 Sobic006G165100 Sobic002G239200--Sobic006G165100 Sobic001G052300 Sobic001G052300 Sobic002G239200--Sobic001G052300 Sobic003G063200 Sobic003G063200 Sobic002G239200--Sobic003G063200 Sobic002G359300 Sobic002G359300 Sobic002G239200--Sobic002G359300 Sobic005G028700 Sobic005G028700 Sobic002G239200--Sobic005G028700 Sobic004G247200 Sobic004G247200 Sobic002G239200--Sobic004G247200 Sobic004G117600 Sobic004G117600 Sobic002G239200--Sobic004G117600 Sobic009G255500 Sobic009G255500 Sobic002G239200--Sobic009G255500 Sobic009G179500 Sobic009G179500 Sobic002G239200--Sobic009G179500 Sobic002G140300 Sobic002G140300 Sobic006G165100--Sobic002G140300 Sobic003G324400 Sobic003G324400 Sobic006G165100--Sobic003G324400 Sobic001G077400 Sobic001G077400 Sobic006G165100--Sobic001G077400 Sobic006G165100--Sobic001G052300 Sobic002G036100 Sobic002G036100 Sobic006G165100--Sobic002G036100 Sobic009G036100 Sobic009G036100 Sobic006G165100--Sobic009G036100 Sobic006G165100--Sobic009G255500 Sobic004G280900 Sobic004G280900 Sobic006G165100--Sobic004G280900 Sobic009G200700 Sobic009G200700 Sobic006G165100--Sobic009G200700 Sobic001G052300--Sobic009G255500 Sobic001G052300--Sobic006G165100 Sobic001G052300--Sobic003G324400 Sobic005G037000 Sobic005G037000 Sobic001G052300--Sobic005G037000 Sobic009G183300 Sobic009G183300 Sobic001G052300--Sobic009G183300 Sobic001G052300--Sobic002G036100 Sobic001G052300--Sobic001G077400 Sobic009G217600 Sobic009G217600 Sobic001G052300--Sobic009G217600 Sobic001G441100 Sobic001G441100 Sobic001G052300--Sobic001G441100 Sobic003G063200--Sobic005G028700 Sobic010G204600 Sobic010G204600 Sobic003G063200--Sobic010G204600 Sobic003G063200--Sobic004G247200 Sobic001G055600 Sobic001G055600 Sobic003G063200--Sobic001G055600 Sobic001G037000 Sobic001G037000 Sobic003G063200--Sobic001G037000 Sobic009G023200 Sobic009G023200 Sobic003G063200--Sobic009G023200 Sobic001G390300 Sobic001G390300 Sobic003G063200--Sobic001G390300 Sobic004G306300 Sobic004G306300 Sobic003G063200--Sobic004G306300 Sobic002G407900 Sobic002G407900 Sobic003G063200--Sobic002G407900 Sobic001G040200 Sobic001G040200 Sobic002G359300--Sobic001G040200 Sobic006G179500 Sobic006G179500 Sobic002G359300--Sobic006G179500 Sobic002G359300--Sobic002G140300 Sobic006G183400 Sobic006G183400 Sobic002G359300--Sobic006G183400 Sobic002G195900 Sobic002G195900 Sobic002G359300--Sobic002G195900 Sobic003G430400 Sobic003G430400 Sobic002G359300--Sobic003G430400 Sobic003G264500 Sobic003G264500 Sobic002G359300--Sobic003G264500 Sobic006G089300 Sobic006G089300 Sobic002G359300--Sobic006G089300 Sobic002G359300--Sobic009G183300 Sobic005G028700--Sobic003G063200 Sobic009G129000 Sobic009G129000 Sobic005G028700--Sobic009G129000 Sobic010G086200 Sobic010G086200 Sobic005G028700--Sobic010G086200 Sobic004G065500 Sobic004G065500 Sobic005G028700--Sobic004G065500 Sobic005G028700--Sobic004G247200 Sobic007G151100 Sobic007G151100 Sobic005G028700--Sobic007G151100 Sobic002G356101 Sobic002G356101 Sobic005G028700--Sobic002G356101 Sobic001G477300 Sobic001G477300 Sobic005G028700--Sobic001G477300 Sobic005G028700--Sobic004G306300 Sobic004G247200--Sobic003G063200 Sobic004G247200--Sobic005G028700 Sobic004G259600 Sobic004G259600 Sobic004G247200--Sobic004G259600 Sobic004G247200--Sobic001G055600 Sobic004G247200--Sobic010G204600 Sobic004G247200--Sobic004G065500 Sobic004G247200--Sobic009G183300 Sobic001G067601 Sobic001G067601 Sobic004G247200--Sobic001G067601 Sobic002G348100 Sobic002G348100 Sobic004G247200--Sobic002G348100 Sobic007G074200 Sobic007G074200 Sobic004G117600--Sobic007G074200 Sobic002G338250 Sobic002G338250 Sobic004G117600--Sobic002G338250 Sobic009G154200 Sobic009G154200 Sobic004G117600--Sobic009G154200 Sobic008G111500 Sobic008G111500 Sobic004G117600--Sobic008G111500 Sobic002G393600 Sobic002G393600 Sobic004G117600--Sobic002G393600 Sobic009G159400 Sobic009G159400 Sobic004G117600--Sobic009G159400 Sobic004G301300 Sobic004G301300 Sobic004G117600--Sobic004G301300 Sobic004G117600--Sobic002G239200 Sobic006G136800 Sobic006G136800 Sobic004G117600--Sobic006G136800 Sobic008G177800 Sobic008G177800 Sobic009G255500--Sobic008G177800 Sobic009G255500--Sobic001G052300 Sobic009G255500--Sobic006G165100 Sobic009G255500--Sobic009G183300 Sobic002G294700 Sobic002G294700 Sobic009G255500--Sobic002G294700 Sobic002G248100 Sobic002G248100 Sobic009G255500--Sobic002G248100 Sobic001G101500 Sobic001G101500 Sobic009G255500--Sobic001G101500 Sobic009G255500--Sobic003G324400 Sobic010G234600 Sobic010G234600 Sobic009G255500--Sobic010G234600 Sobic003G313800 Sobic003G313800 Sobic009G179500--Sobic003G313800 Sobic009G179500--Sobic004G306300 Sobic001G138600 Sobic001G138600 Sobic009G179500--Sobic001G138600 Sobic007G213800 Sobic007G213800 Sobic009G179500--Sobic007G213800 Sobic006G190100 Sobic006G190100 Sobic009G179500--Sobic006G190100 Sobic001G459800 Sobic001G459800 Sobic009G179500--Sobic001G459800 Sobic003G148600 Sobic003G148600 Sobic009G179500--Sobic003G148600 Sobic009G179500--Sobic004G065500 Sobic009G179500--Sobic009G183300
Octagon: transcription factors


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