Gene annotation
Transcriptome id Sobic.009G199300.1
Synonym lateral organ boundaries, Sb09g025700, LBD41, SbLBD32
Functional annotation "domain confirmed by Pfam database, expression induced by IAA and BR treatments" (PubMedID : 20499123)
DUF260 domain containing protein, putative, expressed
UniProt A0A1B6P9L0
Pfam PF03195
Panther DB PTHR31304 PTHR31304:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G02550 : LOB domain-containing protein 41
RAP-DB (Rice) LOC_Os01g32770.1 : DUF260 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a044237 , Zm00025a037948 , Zm00025a037950 , Zm00025a002858
Brachypodium -
Barley HORVU2Hr1G066080.1 , HORVU2Hr1G066080.2
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G199300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G194100 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
2 Sobic.010G209300 expressed protein -
3 Sobic.007G122932 - -
4 Sobic.007G123000 sex determination protein tasselseed-2, putative, expressed -
5 Sobic.007G147300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
6 Sobic.009G021300 Jacalin-like lectin domain containing protein, putative, expressed -
7 Sobic.002G408700 OsFBX259 - F-box domain containing protein, expressed -
8 Sobic.005G075000 LTPL33 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
9 Sobic.005G001500 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659895)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed -
10 Sobic.003G063900 - -
11 Sobic.003G295000 DUF584 domain containing protein, putative, expressed -
12 Sobic.008G001700 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659911)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed -
13 Sobic.006G271400 methyl-CpG binding domain containing protein, expressed -
14 Sobic.010G102900 protein of unknown function DUF1675 domain containing protein, expressed -
15 Sobic.001G330600 NAD dependent epimerase/dehydratase family protein, putative, expressed -
16 Sobic.010G010600 - -
17 Sobic.009G013200 - -
18 Sobic.001G142600 OsFBX103 - F-box domain containing protein, expressed -
19 Sobic.002G166800 RNA recognition motif containing protein, putative, expressed -
20 Sobic.008G071900 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma


Gene co-expression network
sample Sobic009G199300 Sobic009G199300 Sobic007G194100 Sobic007G194100 Sobic009G199300--Sobic007G194100 Sobic010G209300 Sobic010G209300 Sobic009G199300--Sobic010G209300 Sobic007G122932 Sobic007G122932 Sobic009G199300--Sobic007G122932 Sobic007G123000 Sobic007G123000 Sobic009G199300--Sobic007G123000 Sobic007G147300 Sobic007G147300 Sobic009G199300--Sobic007G147300 Sobic009G021300 Sobic009G021300 Sobic009G199300--Sobic009G021300 Sobic002G408700 Sobic002G408700 Sobic009G199300--Sobic002G408700 Sobic005G075000 Sobic005G075000 Sobic009G199300--Sobic005G075000 Sobic005G001500 Sobic005G001500 Sobic009G199300--Sobic005G001500 Sobic002G240700 Sobic002G240700 Sobic007G194100--Sobic002G240700 Sobic010G037200 Sobic010G037200 Sobic007G194100--Sobic010G037200 Sobic007G194100--Sobic009G199300 Sobic002G308400 Sobic002G308400 Sobic007G194100--Sobic002G308400 Sobic005G098700 Sobic005G098700 Sobic007G194100--Sobic005G098700 Sobic009G025100 Sobic009G025100 Sobic007G194100--Sobic009G025100 Sobic004G067900 Sobic004G067900 Sobic007G194100--Sobic004G067900 Sobic007G208200 Sobic007G208200 Sobic007G194100--Sobic007G208200 Sobic001G442200 Sobic001G442200 Sobic007G194100--Sobic001G442200 Sobic010G209300--Sobic002G408700 Sobic010G209300--Sobic007G122932 Sobic010G209300--Sobic009G021300 Sobic003G291100 Sobic003G291100 Sobic010G209300--Sobic003G291100 Sobic010G209300--Sobic005G001500 Sobic006G271400 Sobic006G271400 Sobic010G209300--Sobic006G271400 Sobic001G142600 Sobic001G142600 Sobic010G209300--Sobic001G142600 Sobic010G209300--Sobic007G147300 Sobic010G058000 Sobic010G058000 Sobic010G209300--Sobic010G058000 Sobic007G122932--Sobic009G021300 Sobic007G122932--Sobic007G147300 Sobic007G122932--Sobic007G123000 Sobic007G122932--Sobic005G001500 Sobic007G122932--Sobic002G408700 Sobic007G122932--Sobic010G209300 Sobic009G013200 Sobic009G013200 Sobic007G122932--Sobic009G013200 Sobic003G307600 Sobic003G307600 Sobic007G122932--Sobic003G307600 Sobic008G001700 Sobic008G001700 Sobic007G122932--Sobic008G001700 Sobic007G123000--Sobic007G147300 Sobic007G123000--Sobic007G122932 Sobic007G123000--Sobic009G021300 Sobic007G123000--Sobic008G001700 Sobic007G123000--Sobic005G001500 Sobic007G123000--Sobic002G408700 Sobic007G123000--Sobic010G209300 Sobic008G071900 Sobic008G071900 Sobic007G123000--Sobic008G071900 Sobic009G086800 Sobic009G086800 Sobic007G123000--Sobic009G086800 Sobic007G147300--Sobic009G021300 Sobic007G147300--Sobic007G123000 Sobic007G147300--Sobic007G122932 Sobic007G147300--Sobic008G001700 Sobic007G147300--Sobic009G086800 Sobic007G147300--Sobic008G071900 Sobic007G147300--Sobic010G209300 Sobic007G147300--Sobic002G408700 Sobic004G116200 Sobic004G116200 Sobic007G147300--Sobic004G116200 Sobic009G021300--Sobic005G001500 Sobic009G021300--Sobic007G122932 Sobic009G021300--Sobic002G408700 Sobic010G102900 Sobic010G102900 Sobic009G021300--Sobic010G102900 Sobic009G021300--Sobic008G001700 Sobic009G021300--Sobic008G071900 Sobic009G021300--Sobic007G147300 Sobic009G021300--Sobic007G123000 Sobic003G227800 Sobic003G227800 Sobic009G021300--Sobic003G227800 Sobic002G408700--Sobic005G001500 Sobic002G408700--Sobic010G209300 Sobic002G408700--Sobic009G021300 Sobic002G408700--Sobic001G142600 Sobic002G408700--Sobic007G122932 Sobic010G181900 Sobic010G181900 Sobic002G408700--Sobic010G181900 Sobic002G408700--Sobic010G102900 Sobic002G408700--Sobic003G291100 Sobic002G408700--Sobic003G227800 Sobic005G075000--Sobic006G271400 Sobic005G075000--Sobic010G209300 Sobic006G031000 Sobic006G031000 Sobic005G075000--Sobic006G031000 Sobic005G003100 Sobic005G003100 Sobic005G075000--Sobic005G003100 Sobic005G075000--Sobic009G013200 Sobic005G075000--Sobic007G122932 Sobic001G330600 Sobic001G330600 Sobic005G075000--Sobic001G330600 Sobic009G051201 Sobic009G051201 Sobic005G075000--Sobic009G051201 Sobic005G075000--Sobic003G291100 Sobic005G001500--Sobic009G021300 Sobic005G001500--Sobic002G408700 Sobic005G001500--Sobic003G227800 Sobic005G001500--Sobic010G102900 Sobic005G001500--Sobic001G142600 Sobic005G001500--Sobic003G307600 Sobic005G001500--Sobic008G071900 Sobic003G063900 Sobic003G063900 Sobic005G001500--Sobic003G063900 Sobic005G001500--Sobic007G122932
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.