Gene annotation
Transcriptome id Sobic.004G225800.1
Synonym Sb04g027020
Functional annotation GEM, putative, expressed
UniProt C5XY78
Pfam PF02893
Panther DB PTHR31969 PTHR31969:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G23370 : GRAM domain-containing protein / ABA-responsive protein-related
RAP-DB (Rice) LOC_Os02g42430.1 : GEM, putative, expressed
MaizeGDB (Corn) Zm00025a030929 , Zm00025a010593 , Zm00025a056548 , Zm00025a010594 , Zm00025a032094 , Zm00025a032092
Brachypodium KQK00478 , KQK00479
Barley HORVU2Hr1G090730.4 , HORVU2Hr1G090730.3 , HORVU2Hr1G090730.2 , HORVU2Hr1G090730.1 , HORVU2Hr1G090740.2 , HORVU2Hr1G090740.1 , HORVU2Hr1G090740.4 , HORVU2Hr1G090740.5 , HORVU6Hr1G059940.10 , HORVU2Hr1G090690.1 , HORVU2Hr1G090690.2 , HORVU6Hr1G059940.9 , HORVU6Hr1G059940.8 , HORVU6Hr1G059940.6 , HORVU6Hr1G059940.5 , HORVU6Hr1G059940.4 , HORVU6Hr1G059940.3 , HORVU6Hr1G059940.2 , HORVU6Hr1G059940.1
Wheat TraesCS6B02G263000 , TraesCS2B02G392100 , TraesCS6D02G216500 , TraesCS2B02G392400 , TraesCS2B02G392300 , TraesCS6D02G216600 , TraesCS2D02G371400 , TraesCS2D02G371700 , TraesCS2A02G375100 , TraesCS2A02G375200 , TraesCS2D02G371500 , TraesCS2D02G371600 , TraesCS6A02G234300 , TraesCS6A02G234200 , TraesCS2B02G392200 , TraesCS2A02G375300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G419500 HAD superfamily phosphatase, putative, expressed -
2 Sobic.001G488200 aminotransferase, putative, expressed K00827: alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase
3 Sobic.006G244500 nuclease PA3, putative, expressed -
4 Sobic.003G062200 transcription factor HBP-1b, putative, expressed -
5 Sobic.004G067900 expressed protein -
6 Sobic.002G393600 GDSL-like lipase/acylhydrolase, putative, expressed -
7 Sobic.002G290500 armadillo/beta-catenin repeat protein-related, putative, expressed -
8 Sobic.004G028800 expressed protein K19042: E3 ubiquitin-protein ligase BOI and related proteins
9 Sobic.007G097700 DUF593 domain containing protein, expressed -
10 Sobic.003G000500 BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed -
11 Sobic.007G074200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@- -
12 Sobic.004G056201 - -
13 Sobic.006G151001 - -
14 Sobic.006G066600 DNA-binding protein S1FA, putative, expressed -
15 Sobic.002G308400 "MYB transcription factor(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659858)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
16 Sobic.002G338250 - -
17 Sobic.006G096300 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
18 Sobic.002G260800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
19 Sobic.008G111500 membrane associated DUF588 domain containing protein, putative, expressed -
20 Sobic.007G182500 bZIP family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic004G225800 Sobic004G225800 Sobic002G419500 Sobic002G419500 Sobic004G225800--Sobic002G419500 Sobic001G488200 Sobic001G488200 Sobic004G225800--Sobic001G488200 Sobic006G244500 Sobic006G244500 Sobic004G225800--Sobic006G244500 Sobic003G062200 Sobic003G062200 Sobic004G225800--Sobic003G062200 Sobic004G067900 Sobic004G067900 Sobic004G225800--Sobic004G067900 Sobic002G393600 Sobic002G393600 Sobic004G225800--Sobic002G393600 Sobic002G290500 Sobic002G290500 Sobic004G225800--Sobic002G290500 Sobic004G028800 Sobic004G028800 Sobic004G225800--Sobic004G028800 Sobic007G097700 Sobic007G097700 Sobic004G225800--Sobic007G097700 Sobic002G419500--Sobic002G290500 Sobic002G419500--Sobic004G225800 Sobic007G074200 Sobic007G074200 Sobic002G419500--Sobic007G074200 Sobic009G170800 Sobic009G170800 Sobic002G419500--Sobic009G170800 Sobic004G102900 Sobic004G102900 Sobic002G419500--Sobic004G102900 Sobic006G066600 Sobic006G066600 Sobic002G419500--Sobic006G066600 Sobic002G419500--Sobic004G067900 Sobic004G056201 Sobic004G056201 Sobic002G419500--Sobic004G056201 Sobic002G308400 Sobic002G308400 Sobic002G419500--Sobic002G308400 Sobic001G488200--Sobic006G244500 Sobic006G151001 Sobic006G151001 Sobic001G488200--Sobic006G151001 Sobic001G488200--Sobic004G028800 Sobic009G009800 Sobic009G009800 Sobic001G488200--Sobic009G009800 Sobic001G488200--Sobic003G062200 Sobic006G206500 Sobic006G206500 Sobic001G488200--Sobic006G206500 Sobic005G158901 Sobic005G158901 Sobic001G488200--Sobic005G158901 Sobic003G421900 Sobic003G421900 Sobic001G488200--Sobic003G421900 Sobic001G488200--Sobic006G066600 Sobic006G244500--Sobic009G009800 Sobic006G244500--Sobic003G062200 Sobic003G376000 Sobic003G376000 Sobic006G244500--Sobic003G376000 Sobic006G244500--Sobic005G158901 Sobic006G244500--Sobic006G151001 Sobic008G037000 Sobic008G037000 Sobic006G244500--Sobic008G037000 Sobic006G096200 Sobic006G096200 Sobic006G244500--Sobic006G096200 Sobic010G031600 Sobic010G031600 Sobic006G244500--Sobic010G031600 Sobic001G277800 Sobic001G277800 Sobic006G244500--Sobic001G277800 Sobic003G062200--Sobic006G244500 Sobic003G062200--Sobic009G009800 Sobic003G062200--Sobic003G376000 Sobic003G062200--Sobic008G037000 Sobic003G062200--Sobic006G151001 Sobic003G062200--Sobic006G096200 Sobic003G062200--Sobic010G031600 Sobic010G136300 Sobic010G136300 Sobic003G062200--Sobic010G136300 Sobic009G041100 Sobic009G041100 Sobic003G062200--Sobic009G041100 Sobic004G067900--Sobic002G308400 Sobic004G067900--Sobic006G244500 Sobic007G194100 Sobic007G194100 Sobic004G067900--Sobic007G194100 Sobic004G067900--Sobic003G062200 Sobic003G295000 Sobic003G295000 Sobic004G067900--Sobic003G295000 Sobic004G067900--Sobic006G066600 Sobic002G240800 Sobic002G240800 Sobic004G067900--Sobic002G240800 Sobic007G034600 Sobic007G034600 Sobic004G067900--Sobic007G034600 Sobic001G106400 Sobic001G106400 Sobic004G067900--Sobic001G106400 Sobic002G393600--Sobic007G074200 Sobic002G338250 Sobic002G338250 Sobic002G393600--Sobic002G338250 Sobic004G117600 Sobic004G117600 Sobic002G393600--Sobic004G117600 Sobic008G111500 Sobic008G111500 Sobic002G393600--Sobic008G111500 Sobic001G488000 Sobic001G488000 Sobic002G393600--Sobic001G488000 Sobic009G131400 Sobic009G131400 Sobic002G393600--Sobic009G131400 Sobic003G146400 Sobic003G146400 Sobic002G393600--Sobic003G146400 Sobic006G198800 Sobic006G198800 Sobic002G393600--Sobic006G198800 Sobic006G136800 Sobic006G136800 Sobic002G393600--Sobic006G136800 Sobic002G290500--Sobic004G117600 Sobic002G290500--Sobic002G419500 Sobic002G290500--Sobic008G111500 Sobic008G082200 Sobic008G082200 Sobic002G290500--Sobic008G082200 Sobic002G290500--Sobic002G338250 Sobic001G365100 Sobic001G365100 Sobic002G290500--Sobic001G365100 Sobic010G259500 Sobic010G259500 Sobic002G290500--Sobic010G259500 Sobic003G191500 Sobic003G191500 Sobic002G290500--Sobic003G191500 Sobic001G447100 Sobic001G447100 Sobic002G290500--Sobic001G447100 Sobic004G028800--Sobic006G244500 Sobic004G028800--Sobic001G488200 Sobic004G028800--Sobic006G151001 Sobic004G155300 Sobic004G155300 Sobic004G028800--Sobic004G155300 Sobic004G028800--Sobic003G062200 Sobic004G345100 Sobic004G345100 Sobic004G028800--Sobic004G345100 Sobic004G028800--Sobic009G009800 Sobic002G359900 Sobic002G359900 Sobic004G028800--Sobic002G359900 Sobic004G028800--Sobic006G066600 Sobic004G250900 Sobic004G250900 Sobic007G097700--Sobic004G250900 Sobic007G097700--Sobic004G028800 Sobic004G256200 Sobic004G256200 Sobic007G097700--Sobic004G256200 Sobic002G276900 Sobic002G276900 Sobic007G097700--Sobic002G276900 Sobic007G097700--Sobic001G488200 Sobic007G097700--Sobic004G225800 Sobic006G096300 Sobic006G096300 Sobic007G097700--Sobic006G096300 Sobic001G218200 Sobic001G218200 Sobic007G097700--Sobic001G218200 Sobic009G100300 Sobic009G100300 Sobic007G097700--Sobic009G100300
Octagon: transcription factors


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