Gene annotation
Transcriptome id Sobic.007G034600.1
Synonym PUB8, B80, Sb07g002980
Functional annotation U box protein 8, putative, expressed
UniProt A0A1Z5R8T4
Pfam PF04564
Panther DB PTHR22849 PTHR22849:SF32
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT4G21350 : plant U-box 8
RAP-DB (Rice) LOC_Os08g04470.1 : U box protein 8, putative, expressed
MaizeGDB (Corn) Zm00025a055253
Brachypodium KQJ95012
Barley HORVU7Hr1G073100.2 , HORVU7Hr1G073100.3 , HORVU7Hr1G073100.4
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G067900 expressed protein -
2 Sobic.006G096300 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
3 Sobic.004G028800 expressed protein K19042: E3 ubiquitin-protein ligase BOI and related proteins
4 Sobic.002G308400 "MYB transcription factor(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659858)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.009G149800 subtilisin N-terminal Region family protein, expressed -
6 Sobic.002G240800 - -
7 Sobic.001G106400 serine esterase family protein, putative, expressed K10606: FANCL, E3 ubiquitin-protein ligase FANCL
8 Sobic.003G067700 expressed protein -
9 Sobic.009G170800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
10 Sobic.002G393600 GDSL-like lipase/acylhydrolase, putative, expressed -
11 Sobic.001G206300 dof zinc finger domain containing protein, putative, expressed -
12 Sobic.003G295000 DUF584 domain containing protein, putative, expressed -
13 Sobic.003G024500 expressed protein -
14 Sobic.006G066600 DNA-binding protein S1FA, putative, expressed -
15 Sobic.001G488000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.004G242100 expressed protein -
17 Sobic.006G244500 nuclease PA3, putative, expressed -
18 Sobic.003G436500 ubiquitin-fold modifier 1 precursor, putative, expressed K12162: ubiquitin-fold modifier 1
19 Sobic.009G100300 expressed protein -
20 Sobic.003G062200 transcription factor HBP-1b, putative, expressed -


Gene co-expression network
sample Sobic007G034600 Sobic007G034600 Sobic004G067900 Sobic004G067900 Sobic007G034600--Sobic004G067900 Sobic006G096300 Sobic006G096300 Sobic007G034600--Sobic006G096300 Sobic004G028800 Sobic004G028800 Sobic007G034600--Sobic004G028800 Sobic002G308400 Sobic002G308400 Sobic007G034600--Sobic002G308400 Sobic009G149800 Sobic009G149800 Sobic007G034600--Sobic009G149800 Sobic002G240800 Sobic002G240800 Sobic007G034600--Sobic002G240800 Sobic001G106400 Sobic001G106400 Sobic007G034600--Sobic001G106400 Sobic003G067700 Sobic003G067700 Sobic007G034600--Sobic003G067700 Sobic009G170800 Sobic009G170800 Sobic007G034600--Sobic009G170800 Sobic004G067900--Sobic002G308400 Sobic006G244500 Sobic006G244500 Sobic004G067900--Sobic006G244500 Sobic007G194100 Sobic007G194100 Sobic004G067900--Sobic007G194100 Sobic003G062200 Sobic003G062200 Sobic004G067900--Sobic003G062200 Sobic003G295000 Sobic003G295000 Sobic004G067900--Sobic003G295000 Sobic006G066600 Sobic006G066600 Sobic004G067900--Sobic006G066600 Sobic004G067900--Sobic002G240800 Sobic004G067900--Sobic007G034600 Sobic004G067900--Sobic001G106400 Sobic006G096300--Sobic007G034600 Sobic006G096300--Sobic004G067900 Sobic006G096300--Sobic001G106400 Sobic002G359900 Sobic002G359900 Sobic006G096300--Sobic002G359900 Sobic004G102900 Sobic004G102900 Sobic006G096300--Sobic004G102900 Sobic001G488200 Sobic001G488200 Sobic006G096300--Sobic001G488200 Sobic006G096300--Sobic004G028800 Sobic003G031200 Sobic003G031200 Sobic006G096300--Sobic003G031200 Sobic004G250900 Sobic004G250900 Sobic006G096300--Sobic004G250900 Sobic004G028800--Sobic006G244500 Sobic004G028800--Sobic001G488200 Sobic006G151001 Sobic006G151001 Sobic004G028800--Sobic006G151001 Sobic004G155300 Sobic004G155300 Sobic004G028800--Sobic004G155300 Sobic004G028800--Sobic003G062200 Sobic004G345100 Sobic004G345100 Sobic004G028800--Sobic004G345100 Sobic009G009800 Sobic009G009800 Sobic004G028800--Sobic009G009800 Sobic004G028800--Sobic002G359900 Sobic004G028800--Sobic006G066600 Sobic002G308400--Sobic004G067900 Sobic002G308400--Sobic007G194100 Sobic002G308400--Sobic006G244500 Sobic002G308400--Sobic001G106400 Sobic002G308400--Sobic003G295000 Sobic002G240700 Sobic002G240700 Sobic002G308400--Sobic002G240700 Sobic010G037200 Sobic010G037200 Sobic002G308400--Sobic010G037200 Sobic001G442200 Sobic001G442200 Sobic002G308400--Sobic001G442200 Sobic002G308400--Sobic006G066600 Sobic003G024500 Sobic003G024500 Sobic009G149800--Sobic003G024500 Sobic001G148700 Sobic001G148700 Sobic009G149800--Sobic001G148700 Sobic002G378401 Sobic002G378401 Sobic009G149800--Sobic002G378401 Sobic003G403400 Sobic003G403400 Sobic009G149800--Sobic003G403400 Sobic010G217900 Sobic010G217900 Sobic009G149800--Sobic010G217900 Sobic003G063200 Sobic003G063200 Sobic009G149800--Sobic003G063200 Sobic004G015400 Sobic004G015400 Sobic009G149800--Sobic004G015400 Sobic008G111500 Sobic008G111500 Sobic009G149800--Sobic008G111500 Sobic004G063500 Sobic004G063500 Sobic009G149800--Sobic004G063500 Sobic003G421900 Sobic003G421900 Sobic002G240800--Sobic003G421900 Sobic002G240800--Sobic004G067900 Sobic002G240800--Sobic003G062200 Sobic001G368900 Sobic001G368900 Sobic002G240800--Sobic001G368900 Sobic002G240800--Sobic006G244500 Sobic006G133000 Sobic006G133000 Sobic002G240800--Sobic006G133000 Sobic006G096200 Sobic006G096200 Sobic002G240800--Sobic006G096200 Sobic007G182500 Sobic007G182500 Sobic002G240800--Sobic007G182500 Sobic002G240800--Sobic006G151001 Sobic001G106400--Sobic004G067900 Sobic001G106400--Sobic002G308400 Sobic001G106400--Sobic006G096300 Sobic001G106400--Sobic006G066600 Sobic002G393600 Sobic002G393600 Sobic001G106400--Sobic002G393600 Sobic010G168200 Sobic010G168200 Sobic001G106400--Sobic010G168200 Sobic009G232800 Sobic009G232800 Sobic001G106400--Sobic009G232800 Sobic001G106400--Sobic004G102900 Sobic009G070200 Sobic009G070200 Sobic001G106400--Sobic009G070200 Sobic003G067800 Sobic003G067800 Sobic003G067700--Sobic003G067800 Sobic003G244900 Sobic003G244900 Sobic003G067700--Sobic003G244900 Sobic001G488000 Sobic001G488000 Sobic003G067700--Sobic001G488000 Sobic009G131400 Sobic009G131400 Sobic003G067700--Sobic009G131400 Sobic003G067700--Sobic007G034600 Sobic007G176600 Sobic007G176600 Sobic003G067700--Sobic007G176600 Sobic001G447100 Sobic001G447100 Sobic003G067700--Sobic001G447100 Sobic003G002501 Sobic003G002501 Sobic003G067700--Sobic003G002501 Sobic003G067700--Sobic004G067900 Sobic009G170800--Sobic004G067900 Sobic009G216800 Sobic009G216800 Sobic009G170800--Sobic009G216800 Sobic009G170800--Sobic002G308400 Sobic010G196800 Sobic010G196800 Sobic009G170800--Sobic010G196800 Sobic002G419500 Sobic002G419500 Sobic009G170800--Sobic002G419500 Sobic004G318400 Sobic004G318400 Sobic009G170800--Sobic004G318400 Sobic009G170800--Sobic006G066600 Sobic009G170800--Sobic001G106400 Sobic009G170800--Sobic004G102900
Octagon: transcription factors


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