Gene annotation
Transcriptome id Sobic.003G186700.1
Synonym ATUBP6, Sb03g025180, UBP6
Functional annotation ubiquitin carboxyl-terminal hydrolase 6, putative, expressed
UniProt C5XN14
Pfam PF00240 PF13423
Panther DB PTHR24006
NCBI CDD -
KEGG Orthology K11843; USP14, ubiquitin carboxyl-terminal hydrolase 14
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G51710 : ubiquitin-specific protease 6
RAP-DB (Rice) LOC_Os01g36930.1 : ubiquitin carboxyl-terminal hydrolase 6, putative, expressed
MaizeGDB (Corn) Zm00025a028795 , Zm00025a038328
Brachypodium KQK08273 , PNT72179 , PNT72178
Barley HORVU3Hr1G049120.15 , HORVU3Hr1G049120.14 , HORVU3Hr1G049120.16 , HORVU3Hr1G049120.11 , HORVU3Hr1G049120.10 , HORVU3Hr1G049120.13 , HORVU3Hr1G049120.12 , HORVU3Hr1G049120.9 , HORVU3Hr1G049120.8 , HORVU3Hr1G049120.1 , HORVU3Hr1G049120.3 , HORVU3Hr1G049120.2 , HORVU3Hr1G049120.5 , HORVU3Hr1G049120.4 , HORVU3Hr1G049120.7 , HORVU3Hr1G049120.6
Wheat TraesCS3B02G226300 , TraesCS3B02G226300 , TraesCS3B02G226300 , TraesCS3B02G226300 , TraesCS3B02G226300 , TraesCS3D02G202800 , TraesCS3D02G202800 , TraesCS3A02G201000 , TraesCS3A02G201000
Populus -


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cDNA sequences
Sobic.003G186700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G082900 26S protease regulatory subunit, putative, expressed K03064: PSMC6, 26S proteasome regulatory subunit T4
2 Sobic.002G419100 eukaryotic translation initiation factor 2 subunit beta, putative, expressed K03238: translation initiation factor 2 subunit 2
3 Sobic.006G044600 eukaryotic translation initiation factor 3 subunit H, putative, expressed K03247: translation initiation factor 3 subunit H
4 Sobic.003G280300 STE_MEK_ste7_MAP2K.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
5 Sobic.004G176400 ATP binding protein, putative, expressed K06883: uncharacterized protein
6 Sobic.003G422900 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
7 Sobic.009G139800 rab GDP dissociation inhibitor alpha, putative, expressed K17255: Rab GDP dissociation inhibitor
8 Sobic.001G010700 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
9 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
10 Sobic.002G256200 cyclin, putative, expressed K15161: CCNC, cyclin-C
11 Sobic.008G145100 glycosyl transferase, group 1 domain containing protein, expressed K03844: alpha-1,2-mannosyltransferase
12 Sobic.010G205300 secreted salivary protein, putative, expressed -
13 Sobic.010G073100 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
14 Sobic.006G203100 expressed protein -
15 Sobic.004G081800 Ubiquitin family domain containing protein, expressed K11885: DNA damage-inducible protein 1
16 Sobic.009G164000 tentative name(PubMedID : 31536532)@cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
17 Sobic.007G184500 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
18 Sobic.004G212200 enhancer of rudimentary protein, putative, expressed -
19 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
20 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3


Gene co-expression network
sample Sobic003G186700 Sobic003G186700 Sobic004G082900 Sobic004G082900 Sobic003G186700--Sobic004G082900 Sobic002G419100 Sobic002G419100 Sobic003G186700--Sobic002G419100 Sobic006G044600 Sobic006G044600 Sobic003G186700--Sobic006G044600 Sobic003G280300 Sobic003G280300 Sobic003G186700--Sobic003G280300 Sobic004G176400 Sobic004G176400 Sobic003G186700--Sobic004G176400 Sobic003G422900 Sobic003G422900 Sobic003G186700--Sobic003G422900 Sobic009G139800 Sobic009G139800 Sobic003G186700--Sobic009G139800 Sobic001G010700 Sobic001G010700 Sobic003G186700--Sobic001G010700 Sobic002G341800 Sobic002G341800 Sobic003G186700--Sobic002G341800 Sobic006G252200 Sobic006G252200 Sobic004G082900--Sobic006G252200 Sobic001G283200 Sobic001G283200 Sobic004G082900--Sobic001G283200 Sobic001G458700 Sobic001G458700 Sobic004G082900--Sobic001G458700 Sobic004G010900 Sobic004G010900 Sobic004G082900--Sobic004G010900 Sobic007G176200 Sobic007G176200 Sobic004G082900--Sobic007G176200 Sobic005G105500 Sobic005G105500 Sobic004G082900--Sobic005G105500 Sobic001G145500 Sobic001G145500 Sobic004G082900--Sobic001G145500 Sobic009G149500 Sobic009G149500 Sobic004G082900--Sobic009G149500 Sobic001G444300 Sobic001G444300 Sobic004G082900--Sobic001G444300 Sobic009G213500 Sobic009G213500 Sobic002G419100--Sobic009G213500 Sobic010G205300 Sobic010G205300 Sobic002G419100--Sobic010G205300 Sobic002G419100--Sobic003G186700 Sobic002G084500 Sobic002G084500 Sobic002G419100--Sobic002G084500 Sobic002G419100--Sobic002G341800 Sobic004G310500 Sobic004G310500 Sobic002G419100--Sobic004G310500 Sobic004G212200 Sobic004G212200 Sobic002G419100--Sobic004G212200 Sobic002G419100--Sobic006G252200 Sobic003G349300 Sobic003G349300 Sobic002G419100--Sobic003G349300 Sobic006G044600--Sobic002G341800 Sobic004G194900 Sobic004G194900 Sobic006G044600--Sobic004G194900 Sobic002G394600 Sobic002G394600 Sobic006G044600--Sobic002G394600 Sobic007G184500 Sobic007G184500 Sobic006G044600--Sobic007G184500 Sobic007G166400 Sobic007G166400 Sobic006G044600--Sobic007G166400 Sobic006G044600--Sobic001G458700 Sobic002G077900 Sobic002G077900 Sobic006G044600--Sobic002G077900 Sobic009G058500 Sobic009G058500 Sobic006G044600--Sobic009G058500 Sobic008G055900 Sobic008G055900 Sobic006G044600--Sobic008G055900 Sobic003G280300--Sobic009G139800 Sobic003G280300--Sobic003G186700 Sobic001G103900 Sobic001G103900 Sobic003G280300--Sobic001G103900 Sobic010G002400 Sobic010G002400 Sobic003G280300--Sobic010G002400 Sobic004G173600 Sobic004G173600 Sobic003G280300--Sobic004G173600 Sobic010G080200 Sobic010G080200 Sobic003G280300--Sobic010G080200 Sobic006G114400 Sobic006G114400 Sobic003G280300--Sobic006G114400 Sobic003G280300--Sobic001G010700 Sobic001G265600 Sobic001G265600 Sobic003G280300--Sobic001G265600 Sobic009G164000 Sobic009G164000 Sobic004G176400--Sobic009G164000 Sobic006G101700 Sobic006G101700 Sobic004G176400--Sobic006G101700 Sobic004G156800 Sobic004G156800 Sobic004G176400--Sobic004G156800 Sobic004G353000 Sobic004G353000 Sobic004G176400--Sobic004G353000 Sobic008G092300 Sobic008G092300 Sobic004G176400--Sobic008G092300 Sobic004G176400--Sobic007G184500 Sobic009G143800 Sobic009G143800 Sobic004G176400--Sobic009G143800 Sobic001G360200 Sobic001G360200 Sobic004G176400--Sobic001G360200 Sobic006G278700 Sobic006G278700 Sobic004G176400--Sobic006G278700 Sobic010G020400 Sobic010G020400 Sobic003G422900--Sobic010G020400 Sobic003G155900 Sobic003G155900 Sobic003G422900--Sobic003G155900 Sobic002G303600 Sobic002G303600 Sobic003G422900--Sobic002G303600 Sobic003G422900--Sobic009G164000 Sobic009G044800 Sobic009G044800 Sobic003G422900--Sobic009G044800 Sobic001G392300 Sobic001G392300 Sobic003G422900--Sobic001G392300 Sobic004G257100 Sobic004G257100 Sobic003G422900--Sobic004G257100 Sobic002G256200 Sobic002G256200 Sobic003G422900--Sobic002G256200 Sobic008G082500 Sobic008G082500 Sobic003G422900--Sobic008G082500 Sobic009G139800--Sobic006G114400 Sobic001G109300 Sobic001G109300 Sobic009G139800--Sobic001G109300 Sobic008G113600 Sobic008G113600 Sobic009G139800--Sobic008G113600 Sobic003G428200 Sobic003G428200 Sobic009G139800--Sobic003G428200 Sobic002G141700 Sobic002G141700 Sobic009G139800--Sobic002G141700 Sobic001G058100 Sobic001G058100 Sobic009G139800--Sobic001G058100 Sobic003G087000 Sobic003G087000 Sobic009G139800--Sobic003G087000 Sobic009G139800--Sobic003G280300 Sobic009G139800--Sobic001G010700 Sobic001G010700--Sobic007G176200 Sobic001G010700--Sobic006G252200 Sobic001G010700--Sobic001G458700 Sobic003G330500 Sobic003G330500 Sobic001G010700--Sobic003G330500 Sobic004G335000 Sobic004G335000 Sobic001G010700--Sobic004G335000 Sobic002G428200 Sobic002G428200 Sobic001G010700--Sobic002G428200 Sobic004G224900 Sobic004G224900 Sobic001G010700--Sobic004G224900 Sobic003G043400 Sobic003G043400 Sobic001G010700--Sobic003G043400 Sobic002G423800 Sobic002G423800 Sobic001G010700--Sobic002G423800 Sobic002G341800--Sobic001G458700 Sobic001G404100 Sobic001G404100 Sobic002G341800--Sobic001G404100 Sobic001G481700 Sobic001G481700 Sobic002G341800--Sobic001G481700 Sobic002G341800--Sobic007G176200 Sobic002G341800--Sobic006G044600 Sobic002G341800--Sobic002G394600 Sobic002G341800--Sobic005G105500 Sobic008G137600 Sobic008G137600 Sobic002G341800--Sobic008G137600 Sobic004G081800 Sobic004G081800 Sobic002G341800--Sobic004G081800
Octagon: transcription factors


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